Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G1566 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.2e-161 573.2 301 100.0
FvH4_2g12920 Fragaria vesca HOM05D003575 ORTHO05D003587 2.0e-100 369.8 186 100.0
FAN15G3143 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.1e-97 359.8 185 98.4
FAN20G0397 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.1e-97 359.8 185 98.4
RcHm_v2.0_Chr2g0155771 Rosa chinensis HOM05D003575 ORTHO05D003587 7.5e-71 271.6 163 85.3
FvH4_6g40520 Fragaria vesca HOM05D003575 ORTHO05D003587 8.0e-57 224.9 118 93.2
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.1e-56 223.0 120 92.5
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 1.2e-55 221.1 190 60.5
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.0e-55 220.3 175 63.4
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.0e-55 220.3 175 63.4
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 2.0e-55 220.3 204 58.3
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.7e-49 199.1 174 60.3
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 8.1e-49 198.4 169 59.2
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 8.9e-48 194.9 183 58.5
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 8.9e-48 194.9 183 58.5
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 1.9e-45 187.2 209 52.6
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 1.9e-45 187.2 206 51.9
MD09G1128800 Malus domestica HOM05D003575 ORTHO05D003587 2.7e-44 183.3 158 60.8
RcHm_v2.0_Chr2g0155791 Rosa chinensis HOM05D003575 ORTHO05D003587 2.1e-41 173.7 170 56.5
FvH4_6g38180 Fragaria vesca HOM05D019615 ORTHO05D035232 1.2e-39 167.9 117 83.8
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.2e-39 167.9 189 49.2
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 9.9e-39 164.9 168 55.4
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.9e-38 162.5 172 50.6
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.9e-38 162.5 207 45.4
FvH4_6g15600 Fragaria vesca HOM05D019615 ORTHO05D035232 6.4e-38 162.2 117 81.2
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 5.1e-35 152.5 188 45.2
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 6.6e-35 152.1 168 48.2
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 1.1e-34 151.4 194 45.4
Dinv21311 Davidia involucrata HOM05D003575 ORTHO05D003587 1.2e-33 147.9 169 46.2
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 1.5e-31 141.0 187 42.2
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 2.6e-31 140.2 172 47.1
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 3.4e-31 139.8 172 44.2
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 4.4e-31 139.4 184 44.0
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 7.6e-31 138.7 177 43.5
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 9.9e-31 138.3 197 42.1
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 9.9e-31 138.3 197 42.1
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 2.2e-30 137.1 185 41.1
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 4.9e-30 136.0 190 41.6
FAN16G0569 Fragaria x ananassa HOM05D003575 ORTHO05D003587 8.4e-30 135.2 129 55.0
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 1.9e-29 134.0 197 41.1
FAN14G0305 Fragaria x ananassa HOM05D019615 ORTHO05D035232 2.4e-29 133.7 117 71.8
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 2.4e-29 133.7 231 37.2
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 4.2e-29 132.9 166 43.4
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 7.1e-29 132.1 183 41.5
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 1.2e-28 131.3 168 41.1
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 1.6e-28 131.0 228 37.3
FAN11G3641 Fragaria x ananassa HOM05D000737 ORTHO05D000581 2.1e-28 130.6 107 74.8
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 2.7e-28 130.2 173 39.9
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 3.5e-28 129.8 160 47.5
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 6.0e-28 129.0 178 40.4
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 7.8e-28 128.6 169 41.4
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 7.8e-28 128.6 168 42.3
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 1.0e-27 128.3 169 41.4
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 1.3e-27 127.9 209 38.8
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 3.9e-27 126.3 205 40.0
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 3.9e-27 126.3 155 38.7
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 1.1e-26 124.8 155 41.3
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 1.5e-26 124.4 171 39.8
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 1.9e-26 124.0 185 38.9
FAN14G3058 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.9e-26 124.0 102 61.8
Medtr3g082740 Medicago truncatula HOM05D003575 ORTHO05D003587 2.5e-26 123.6 176 39.2
TPR.G40538 Trifolium pratense HOM05D003575 ORTHO05D003587 2.5e-26 123.6 155 38.7
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 3.3e-26 123.2 170 40.0
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 4.3e-26 122.9 168 39.9
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 5.6e-26 122.5 167 40.1
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 1.6e-25 120.9 175 38.9
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 1.6e-25 120.9 158 38.0
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.8e-25 120.2 200 37.0
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.8e-25 120.2 137 48.2
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 6.2e-25 119.0 178 41.0
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 8.1e-25 118.6 193 38.3
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 1.8e-24 117.5 172 38.4
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 4.0e-24 116.3 166 38.6
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 5.3e-24 115.9 156 39.1
FAN12G2736 Fragaria x ananassa HOM05D019615 ORTHO05D205476 6.9e-24 115.5 124 63.7
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 1.2e-23 114.8 178 36.5
FAN11G3323 Fragaria x ananassa HOM05D000449 ORTHO05D000360 1.2e-23 114.8 103 71.8
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.5e-23 114.4 154 40.9
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 1.5e-23 114.4 157 38.2
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 2.6e-23 113.6 166 37.3
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 3.4e-23 113.2 169 42.6
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 1.3e-22 111.3 157 37.6
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 1.3e-22 111.3 157 37.6
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 1.3e-22 111.3 206 37.9
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 1.3e-22 111.3 116 46.6
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 1.3e-22 111.3 158 35.4
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.3e-22 111.3 175 35.4
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 1.7e-22 110.9 173 38.7
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 2.2e-22 110.5 163 38.7
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 2.2e-22 110.5 168 36.3
Aqoxy4G01549 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.9e-22 110.2 202 36.6
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 2.9e-22 110.2 222 32.9
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 3.8e-22 109.8 167 38.3
FvH4_3g20450 Fragaria vesca HOM05D039614 ORTHO05D045963 6.4e-22 109.0 95 55.8
FAN11G0216 Fragaria x ananassa HOM05D003575 ORTHO05D045963 6.4e-22 109.0 95 55.8
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 6.4e-22 109.0 202 35.1
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 6.4e-22 109.0 165 37.0
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 1.9e-21 107.5 155 36.8
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 4.2e-21 106.3 157 38.9
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 5.4e-21 105.9 105 52.4
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 7.1e-21 105.5 221 33.5
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 9.3e-21 105.1 212 37.7
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 1.2e-20 104.8 161 36.6
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 2.7e-20 103.6 158 38.6
Cc00_g01040 Coffea canephora HOM05D003575 ORTHO05D003587 2.7e-20 103.6 171 33.9
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 3.5e-20 103.2 163 39.3
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 1.0e-19 101.7 187 35.8
Hund01540 Selenicereus undatus HOM05D003575 ORTHO05D003587 1.3e-19 101.3 156 37.2
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 3.0e-19 100.1 170 33.5
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 3.0e-19 100.1 158 34.8
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 3.9e-19 99.8 170 34.1
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 6.7e-19 99.0 200 34.5
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 3.3e-18 96.7 175 34.9
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 4.3e-18 96.3 159 36.5
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 5.6e-18 95.9 173 36.4
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 2.8e-17 93.6 120 38.3
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 4.8e-17 92.8 197 32.5
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 2.4e-16 90.5 160 33.8
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 3.1e-16 90.1 169 34.3
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 4.0e-16 89.7 99 43.4
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 2.0e-15 87.4 169 33.1
MBI15_g48140_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 5.8e-15 85.9 124 37.1
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 1.1e-13 81.6 145 33.1
FvH4_4g24520 Fragaria vesca HOM05D017005 ORTHO05D020699 1.1e-13 81.6 64 78.1
Aqoxy91s001 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 4.2e-13 79.7 115 40.0
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 1.6e-12 77.8 120 35.8
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 2.1e-12 77.4 90 41.1
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 6.7e-11 72.4 166 33.7
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 8.7e-11 72.0 154 31.8
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 3.3e-10 70.1 246 25.6
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 5.6e-10 69.3 90 37.8
FAN24G2606 Fragaria x ananassa HOM05D000657 ORTHO05D002092 7.4e-10 68.9 79 58.2
PSO339G5808 Papaver somniferum HOM05D003575 ORTHO05D003587 9.6e-10 68.6 140 28.6
MBI15_g06462_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 1.6e-09 67.8 155 30.3
Dinv26594 Davidia involucrata HOM05D000074 ORTHO05D001293 2.8e-09 67.0 78 47.4
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 7.6e-07 58.9 74 35.1
CAN.G437.9 Capsicum annuum HOM05D003575 ORTHO05D003587 4.9e-06 56.2 85 35.3


User provided reference genes

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