Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G1512 Fragaria x ananassa HOM05D006421 ORTHO05D008268 6.0e-290 1000.7 773 100.0
FvH4_2g28941 Fragaria vesca HOM05D006421 ORTHO05D008268 1.1e-270 936.8 773 96.2
FAN20G2434 Fragaria x ananassa HOM05D006421 ORTHO05D008268 1.4e-257 893.3 777 86.2
FAN27G1287 Fragaria x ananassa HOM05D006421 ORTHO05D008268 2.3e-257 892.5 773 89.1
FAN15G0163 Fragaria x ananassa HOM05D006421 ORTHO05D008268 3.1e-254 882.1 773 89.0
RcHm_v2.0_Chr6g0297771 Rosa chinensis HOM05D006421 ORTHO05D008268 4.6e-205 718.8 770 80.5
Prupe.1G482200 Prunus persica HOM05D006421 ORTHO05D008268 6.5e-151 538.9 782 63.6
MD15G1126300 Malus domestica HOM05D006421 ORTHO05D008268 1.4e-137 494.6 777 61.8
Gorai.001G034500 Gossypium raimondii HOM05D006421 ORTHO05D008268 4.1e-129 466.5 773 58.3
Gohir.A07G028900 Gossypium hirsutum HOM05D006421 ORTHO05D008268 2.6e-128 463.8 773 61.6
Gohir.D07G032900 Gossypium hirsutum HOM05D006421 ORTHO05D008268 2.7e-125 453.8 773 61.2
Eucgr.C01728 Eucalyptus grandis HOM05D006421 ORTHO05D008268 2.8e-122 443.7 774 56.7
Actinidia15670 Actinidia chinensis HOM05D006421 ORTHO05D008268 7.0e-121 439.1 772 53.0
TWI34G1016 Tripterygium wilfordii HOM05D006421 ORTHO05D008268 5.9e-120 436.0 773 58.1
Duzib168G2139 Durio zibethinus HOM05D006421 ORTHO05D008268 9.4e-118 428.7 775 60.3
Hma1.2p1_0243F.1_g100900 Hydrangea macrophylla HOM05D006421 ORTHO05D008268 3.4e-115 420.2 739 63.2
GSVIVG01035871001 Vitis vinifera HOM05D006421 ORTHO05D008268 9.1e-113 412.1 776 60.2
Duzib187G1366 Durio zibethinus HOM05D006421 ORTHO05D008268 8.5e-111 405.6 775 56.9
AT4G32190 Arabidopsis thaliana HOM05D006421 ORTHO05D008268 1.6e-109 401.4 774 55.9
Cfa013134 Carpinus fangiana HOM05D006421 ORTHO05D008268 8.0e-109 399.1 777 63.1
CiPaw.07G224100 Carya illinoinensis HOM05D006421 ORTHO05D008268 1.3e-106 391.7 762 55.5
Haze_21503 Corylus avellana HOM05D006421 ORTHO05D008268 6.3e-106 389.4 778 54.0
Sopen08g011590 Solanum pennellii HOM05D006421 ORTHO05D008268 2.4e-105 387.5 742 53.1
Solyc08g022030.3 Solanum lycopersicum HOM05D006421 ORTHO05D008268 3.8e-103 380.2 775 51.1
Manes.16G122900 Manihot esculenta HOM05D006421 ORTHO05D008268 2.5e-102 377.5 773 54.3
Potri.006G255800 Populus trichocarpa HOM05D006421 ORTHO05D008268 2.1e-101 374.4 774 58.3
PGSC0003DMG400004306 Solanum tuberosum HOM05D006421 ORTHO05D008268 8.9e-100 369.0 772 55.8
COL.COLO4_18870 Corchorus olitorius HOM05D006421 ORTHO05D008268 1.5e-99 368.2 773 59.6
EL10Ac2g04201 Beta vulgaris HOM05D006421 ORTHO05D008268 2.0e-99 367.9 782 55.1
AL7G19640 Arabidopsis lyrata HOM05D006421 ORTHO05D008268 9.8e-99 365.5 769 55.8
Thhalv10024464m.g Eutrema salsugineum HOM05D006421 ORTHO05D008268 3.2e-97 360.5 775 55.1
Thecc.09G023300 Theobroma cacao HOM05D006421 ORTHO05D008268 3.2e-97 360.5 685 62.5
CAN.G117.5 Capsicum annuum HOM05D006421 ORTHO05D008268 1.6e-96 358.2 738 54.1
QL02p021457 Quercus lobata HOM05D006421 ORTHO05D008268 2.7e-96 357.5 774 58.5
AUR62031532 Chenopodium quinoa HOM05D006421 ORTHO05D008268 3.9e-95 353.6 743 47.1
Dinv08633 Davidia involucrata HOM05D006421 ORTHO05D008268 7.3e-94 349.4 731 57.9
arahy.Tifrunner.gnm1.ann1.1F1BFK Arachis hypogaea HOM05D006421 ORTHO05D008268 5.2e-92 343.2 773 54.6
Nn8g39522 Nelumbo nucifera HOM05D006421 ORTHO05D008268 4.9e-90 336.7 763 57.0
Oeu053117.1 Olea europaea HOM05D006421 ORTHO05D008268 4.9e-90 336.7 491 59.5
Nitab4.5_0002408g0020 Nicotiana tabacum HOM05D006421 ORTHO05D008268 9.2e-89 332.4 748 57.2
Psat6g029040 Pisum sativum HOM05D006421 ORTHO05D008268 1.6e-88 331.6 785 55.7
Cc08_g00500 Coffea canephora HOM05D006421 ORTHO05D008268 2.0e-88 331.3 752 54.9
arahy.Tifrunner.gnm1.ann1.658XMK Arachis hypogaea HOM05D006421 ORTHO05D008268 5.0e-87 326.6 773 53.0
TAR625G1222 Trochodendron aralioides HOM05D006421 ORTHO05D008268 5.6e-86 323.2 780 55.0
Sabra06G0200100 Salix brachista HOM05D006421 ORTHO05D008268 8.0e-85 319.3 774 54.7
DCAR_001538 Daucus carota HOM05D006421 ORTHO05D008268 1.4e-84 318.5 768 50.0
Nitab4.5_0002042g0070 Nicotiana tabacum HOM05D006421 ORTHO05D008268 2.0e-83 314.7 743 57.3
SalBow4G3177 Salvia bowleyana HOM05D006421 ORTHO05D008268 2.0e-83 314.7 756 54.4
Hund04507 Selenicereus undatus HOM05D006421 ORTHO05D008268 7.5e-83 312.8 792 51.0
Migut.A00033 Erythranthe guttata HOM05D006421 ORTHO05D008268 2.2e-82 311.2 773 53.3
Lj8P705T28 Lonicera japonica HOM05D006421 ORTHO05D008268 3.7e-82 310.5 725 48.1
Sp7g29980 Schrenkiella parvula HOM05D006421 ORTHO05D008268 7.1e-81 306.2 753 54.8
Medtr1g012620 Medicago truncatula HOM05D006421 ORTHO05D008268 2.1e-80 304.7 784 54.8
vmacro05173 Vaccinium macrocarpon HOM05D006421 ORTHO05D008268 2.7e-80 304.3 756 51.3
BcaNung03144 Brassica carinata HOM05D006421 ORTHO05D008268 3.5e-80 303.9 766 52.0
TPR.G15679 Trifolium pratense HOM05D006421 ORTHO05D008268 5.1e-79 300.1 783 55.6
Rhsim07G0159500 Rhododendron simsii HOM05D006421 ORTHO05D008268 1.1e-78 298.9 754 50.3
CANSAT35G0532 Cannabis sativa HOM05D006421 ORTHO05D008268 8.1e-77 292.7 766 51.8
MSTRG.11610 Avicennia marina HOM05D006421 ORTHO05D008268 7.6e-75 286.2 763 52.8
Cpa.g.sc217.10 Carica papaya HOM05D006421 ORTHO05D008268 1.3e-74 285.4 763 56.4
THA.LOC104818618 Tarenaya hassleriana HOM05D006421 ORTHO05D008268 1.3e-74 285.4 777 49.7
PSO170G2190 Papaver somniferum HOM05D006421 ORTHO05D008268 2.2e-74 284.6 770 49.2
SGA_v2.0_scaffold20G09108 Striga asiatica HOM05D002695 ORTHO05D002964 3.7e-74 283.9 716 51.5
C01p06780 Brassica napus HOM05D006421 ORTHO05D008268 3.2e-73 280.8 779 51.0
BolC1t00672H Brassica oleracea HOM05D006421 ORTHO05D008268 3.2e-73 280.8 779 51.0
Lj5g0021919 Lotus japonicus HOM05D006421 ORTHO05D008268 2.7e-72 277.7 780 54.0
Oeu033132.1 Olea europaea HOM05D006421 ORTHO05D008268 7.8e-72 276.2 751 51.4
A01p06150 Brassica napus HOM05D006421 ORTHO05D008268 3.9e-71 273.9 465 50.8
CARHR240120 Cardamine hirsuta HOM05D006421 ORTHO05D008268 3.9e-71 273.9 779 48.5
Ciclev10007642m.g Citrus clementina HOM05D006421 ORTHO05D008268 8.1e-69 266.2 684 51.6
Actinidia14601 Actinidia chinensis HOM05D006421 ORTHO05D008268 1.1e-68 265.8 773 52.4
Carub.0007s0836 Capsella rubella HOM05D006421 ORTHO05D008268 5.2e-68 263.5 773 46.7
ECA246G1400 Erigeron canadensis HOM05D002695 ORTHO05D002964 1.5e-67 261.9 775 51.9
VMungo0647G1945 Vigna mungo HOM05D006421 ORTHO05D008268 1.5e-67 261.9 782 52.6
FAN15G2294 Fragaria x ananassa HOM05D006421 ORTHO05D008268 4.4e-67 260.4 355 55.8
Phvul.001G050600 Phaseolus vulgaris HOM05D006421 ORTHO05D008268 9.9e-67 259.2 778 51.9
BcaC09g52004 Brassica carinata HOM05D006421 ORTHO05D008268 1.7e-66 258.5 769 50.8
AUR62012410 Chenopodium quinoa HOM05D006421 ORTHO05D008268 4.2e-65 253.8 743 44.4
TAR636G3563 Trochodendron aralioides HOM05D006421 ORTHO05D008268 3.9e-63 247.3 485 52.8
CSS0048874 Camellia sinensis var. sinensis HOM05D006421 ORTHO05D008268 5.6e-62 243.4 759 47.4
C02p24100 Brassica napus HOM05D006421 ORTHO05D008268 2.6e-59 234.6 445 49.9
Peaxi162Scf01131g00117 Petunia axillaris HOM05D006421 ORTHO05D008268 4.4e-59 233.8 742 50.4
BcaC03g14918 Brassica carinata HOM05D006421 ORTHO05D008268 8.4e-58 229.6 414 51.9
PGR031G1896 Punica granatum HOM05D006421 ORTHO05D008268 1.1e-57 229.2 773 46.8
FAN15G3016 Fragaria x ananassa HOM05D006421 ORTHO05D008268 5.4e-57 226.9 263 77.2
PSO017G0123 Papaver somniferum HOM05D006421 ORTHO05D008268 2.7e-56 224.6 765 45.6
Lalb_Chr24g0402151 Lupinus albus HOM05D006421 ORTHO05D008268 2.5e-54 218.0 767 46.9
HanXRQChr16g0510771 Helianthus annuus HOM05D006421 ORTHO05D008268 7.3e-54 216.5 776 44.8
MELO3C003706.2 Cucumis melo HOM05D006421 ORTHO05D008268 8.1e-53 213.0 781 41.4
Aa31LG2G17740 Aethionema arabicum HOM05D006421 ORTHO05D008268 2.4e-52 211.5 765 48.0
CSS0036831 Camellia sinensis var. sinensis HOM05D006421 ORTHO05D008268 2.2e-50 204.9 761 46.1
Atru.chr7.2443 Acer truncatum HOM05D006421 ORTHO05D008268 2.9e-50 204.5 721 48.7
ClCG05G016810 Citrullus lanatus HOM05D006421 ORTHO05D008268 2.9e-50 204.5 792 47.5
CsaV3_3G046330 Cucumis sativus L. HOM05D006421 ORTHO05D008268 7.9e-48 196.4 781 45.1
Sed0003255 Sechium edule HOM05D006421 ORTHO05D008268 1.3e-47 195.7 751 46.2
Ca_13033_v3 Cicer arietinum L. HOM05D006421 ORTHO05D008268 1.6e-45 188.7 783 43.4
Sc09g0008160 Simmondsia chinensis HOM05D006421 ORTHO05D008268 1.4e-44 185.7 521 41.3
BraA10t43273Z Brassica rapa HOM05D006421 ORTHO05D008268 4.5e-35 154.1 196 45.9
unitig_748.g8080 Utricularia gibba HOM05D006421 ORTHO05D008268 1.7e-34 152.1 751 44.2
TAR636G0610 Trochodendron aralioides HOM05D006421 ORTHO05D008268 5.0e-34 150.6 164 56.1
Glyma.17G211900 Glycine max HOM05D006421 ORTHO05D008268 3.2e-33 147.9 341 53.4
Zm00001eb206500 Zea mays HOM05D006421 ORTHO05D008268 1.3e-29 136.0 719 42.1
Glyma.14G115951 Glycine max HOM05D006421 ORTHO05D008268 6.5e-26 123.6 204 44.1
Lsat_1_v5_gn_5_30240 Lactuca sativa HOM05D006421 ORTHO05D008268 2.1e-24 118.6 749 37.7
Potri.018G026300 Populus trichocarpa HOM05D006421 ORTHO05D008268 3.6e-24 117.9 433 30.9
SEGI_00734 Sequoiadendron giganteum HOM05D006421 ORTHO05D008268 2.6e-19 101.7 751 34.5
SEGI_28581 Sequoiadendron giganteum HOM05D006421 ORTHO05D008268 4.5e-19 100.9 473 34.5
FAN15G3111 Fragaria x ananassa HOM05D006421 ORTHO05D008268 7.7e-19 100.1 131 55.0
C02p24000 Brassica napus HOM05D006421 ORTHO05D008268 8.5e-18 96.7 345 54.8
Glyma.14G115900 Glycine max HOM05D006421 ORTHO05D008268 3.3e-14 84.7 162 40.1
CDE07G0223 Ceratophyllum demersum HOM05D006421 ORTHO05D008268 9.1e-12 76.6 103 38.8
Sabra18G0028800 Salix brachista HOM05D006421 ORTHO05D008268 2.6e-11 75.1 131 43.5
ATR0800G069 Amborella trichopoda HOM05D006421 ORTHO05D008268 3.5e-11 74.7 737 42.9
A03p32460 Brassica napus HOM05D003015 ORTHO05D024548 4.5e-11 74.3 86 54.7
BraA07t31256Z Brassica rapa HOM05D000793 ORTHO05D024548 7.7e-11 73.6 86 54.7
CDE06G1662 Ceratophyllum demersum HOM05D006421 ORTHO05D008268 6.1e-08 63.9 71 45.1
Os02g0186400 Oryza sativa ssp. japonica HOM05D006421 ORTHO05D008268 8.0e-08 63.5 763 40.5
Sabra18G0029000 Salix brachista HOM05D006421 ORTHO05D008268 1.0e-07 63.2 101 44.6
A07p36910 Brassica napus HOM05D000793 ORTHO05D024548 5.7e-06 57.4 56 60.7
Mapoly0009s0162 Marchantia polymorpha HOM05D006421 ORTHO05D008268 7.5e-06 57.0 158 31.6


User provided reference genes

Program Settings