Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 3.1e-148 528.9 362 100.0
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 3.1e-148 528.9 362 100.0
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 3.1e-140 502.3 362 90.6
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 2.5e-137 492.7 362 94.5
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 1.1e-111 407.5 362 79.3
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 1.0e-61 241.5 277 58.5
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 1.7e-56 224.2 283 55.1
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 5.7e-41 172.6 284 52.8
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 9.7e-41 171.8 285 50.5
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 8.2e-40 168.7 304 45.4
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 8.5e-37 158.7 302 42.4
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 2.3e-34 150.6 284 51.4
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 2.3e-34 150.6 294 44.9
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 5.2e-34 149.4 289 42.6
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 5.2e-34 149.4 289 42.2
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 3.7e-32 143.3 275 40.0
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 8.2e-32 142.1 281 40.2
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 1.8e-31 141.0 283 44.2
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 5.3e-31 139.4 294 45.9
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 9.1e-31 138.7 275 44.4
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 1.6e-30 137.9 280 40.7
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 2.0e-30 137.5 289 46.0
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 2.7e-30 137.1 274 41.2
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 3.5e-30 136.7 279 40.9
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 4.5e-30 136.3 296 43.6
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 1.7e-29 134.4 298 40.9
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 2.9e-29 133.7 282 41.8
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 8.5e-29 132.1 224 43.3
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 8.5e-29 132.1 224 43.3
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 8.5e-29 132.1 295 42.0
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 3.2e-28 130.2 283 41.3
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 3.2e-28 130.2 302 45.0
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 4.2e-28 129.8 271 43.9
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 2.7e-27 127.1 308 44.8
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 2.7e-27 127.1 296 38.2
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 3.6e-27 126.7 277 41.2
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 3.6e-27 126.7 288 43.4
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 1.8e-26 124.4 290 37.2
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 2.3e-26 124.0 281 37.0
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 5.2e-26 122.9 305 44.6
CiPaw.03G270700 Carya illinoinensis HOM05D007706 ORTHO05D009593 6.8e-26 122.5 277 38.3
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 6.8e-26 122.5 300 37.7
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 6.8e-26 122.5 282 39.4
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 2.0e-25 120.9 297 38.0
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 2.0e-25 120.9 286 39.2
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 3.4e-25 120.2 290 37.6
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 7.5e-25 119.0 302 43.4
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 1.3e-24 118.2 290 40.3
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 1.3e-24 118.2 294 36.4
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 1.3e-24 118.2 284 39.8
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 2.8e-24 117.1 294 39.8
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 2.8e-24 117.1 280 42.1
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 8.3e-24 115.5 288 42.0
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 2.4e-23 114.0 299 37.8
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 2.4e-23 114.0 298 37.6
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 9.1e-23 112.1 291 38.1
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 5.9e-22 109.4 285 37.9
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 7.7e-22 109.0 275 44.4
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.3e-21 108.2 304 43.4
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 1.7e-21 107.8 295 36.9
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 3.8e-21 106.7 298 39.6
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 5.0e-21 106.3 294 35.4
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 8.6e-21 105.5 283 41.3
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 1.5e-20 104.8 281 39.9
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 2.5e-20 104.0 288 38.9
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 3.3e-20 103.6 285 41.4
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 3.3e-20 103.6 273 37.0
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 5.5e-20 102.8 280 37.1
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 9.5e-20 102.1 281 40.2
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 3.6e-19 100.1 291 37.1
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 3.6e-19 100.1 279 34.4
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 1.0e-18 98.6 261 38.3
Migut.N02230 Erythranthe guttata HOM05D007706 ORTHO05D009593 1.4e-18 98.2 282 39.7
MELO3C022390.2 Cucumis melo HOM05D007706 ORTHO05D009593 1.5e-17 94.7 284 39.1
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 7.5e-17 92.4 285 37.2
CsaV3_6G007370 Cucumis sativus L. HOM05D007706 ORTHO05D009593 1.7e-16 91.3 275 32.7
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 1.8e-15 87.8 299 33.1
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 4.1e-15 86.7 281 35.6
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 2.0e-14 84.3 294 38.1
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 2.0e-14 84.3 274 32.5
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 1.3e-13 81.6 288 35.8
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 1.3e-13 81.6 297 33.0
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 2.9e-13 80.5 286 32.9
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 1.5e-12 78.2 301 30.6
ClCG06G001430 Citrullus lanatus HOM05D007706 ORTHO05D009593 4.3e-12 76.6 280 32.1
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 2.1e-11 74.3 277 30.7
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 2.8e-11 73.9 310 28.4
Os03g0140700 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 3.6e-11 73.6 284 35.9
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 3.6e-11 73.6 164 36.6
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 3.6e-11 73.6 280 33.6
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 4.7e-11 73.2 203 35.5
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 1.4e-10 71.6 151 43.0
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 2.3e-10 70.9 328 33.2
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 3.0e-10 70.5 301 29.9
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 4.0e-10 70.1 301 29.6
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 5.2e-10 69.7 75 50.7
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 6.8e-10 69.3 290 33.8
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.2e-09 68.6 288 31.6
COL.COLO4_10568 Corchorus olitorius HOM05D007706 ORTHO05D009593 1.5e-09 68.2 47 70.2
Nitab4.5_0000845g0230 Nicotiana tabacum HOM05D007706 ORTHO05D009593 2.0e-09 67.8 86 44.2
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 2.2e-08 64.3 278 28.8
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 2.2e-08 64.3 115 37.4
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.7e-08 63.5 90 43.3
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 6.4e-08 62.8 98 41.8
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 6.4e-08 62.8 99 40.4
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 6.4e-08 62.8 299 28.4
Lalb_Chr01g0019491 Lupinus albus HOM05D007706 ORTHO05D009593 8.3e-08 62.4 88 52.3
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 1.9e-07 61.2 43 67.4
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 3.2e-07 60.5 103 35.9
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 4.1e-07 60.1 81 45.7
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 5.4e-07 59.7 85 47.1
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 5.4e-07 59.7 88 40.9
Nn4g24887 Nelumbo nucifera HOM05D027966 ORTHO05D025782 5.4e-07 59.7 272 26.5
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 7.0e-07 59.3 214 29.0
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 7.0e-07 59.3 85 42.4
Hund00522 Selenicereus undatus HOM05D001903 ORTHO05D001847 9.2e-07 58.9 69 47.8
SalBow7G0697 Salvia bowleyana HOM05D007706 ORTHO05D009593 2.0e-06 57.8 275 28.7
Thhalv10014275m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 2.7e-06 57.4 50 50.0
Potri.006G068200 Populus trichocarpa HOM05D001903 ORTHO05D001847 2.7e-06 57.4 76 44.7
Actinidia30127 Actinidia chinensis HOM05D007706 ORTHO05D009593 4.6e-06 56.6 72 47.2


User provided reference genes

Program Settings