Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 3.8e-131 471.5 232 100.0
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.8e-128 462.6 232 98.3
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 5.1e-128 461.1 232 97.8
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 3.0e-120 435.3 221 97.7
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 2.2e-107 392.5 221 89.6
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 2.8e-89 332.4 221 76.5
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 3.7e-86 322.0 222 73.4
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 5.4e-77 291.6 221 67.4
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 1.0e-75 287.3 221 66.5
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 8.6e-75 284.3 221 63.3
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 1.5e-74 283.5 220 65.5
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 9.5e-74 280.8 221 65.6
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 6.2e-73 278.1 219 65.8
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 1.4e-72 276.9 223 64.1
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 1.4e-72 276.9 222 67.1
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 4.0e-72 275.4 207 68.1
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 8.9e-72 274.2 221 65.2
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 8.9e-72 274.2 221 64.3
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 2.0e-71 273.1 222 63.5
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 2.6e-71 272.7 223 64.1
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 2.6e-71 272.7 223 64.6
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 4.4e-71 271.9 227 63.4
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 9.9e-71 270.8 221 64.7
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 2.9e-70 269.2 220 65.5
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.1e-69 267.3 221 63.3
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 1.9e-69 266.5 203 67.5
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 1.9e-69 266.5 202 67.3
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 3.2e-69 265.8 225 64.4
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 4.1e-69 265.4 201 65.7
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 1.2e-68 263.8 198 64.1
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 1.2e-68 263.8 222 61.3
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 1.6e-68 263.5 194 67.5
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 3.5e-68 262.3 206 67.0
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 6.0e-68 261.5 228 61.8
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 2.3e-67 259.6 223 61.4
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 3.9e-67 258.8 219 61.6
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 3.9e-67 258.8 200 66.0
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 5.1e-67 258.5 232 61.2
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 5.1e-67 258.5 220 62.7
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 6.6e-67 258.1 223 61.9
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.5e-66 256.9 215 62.8
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.5e-66 256.9 215 62.8
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 1.9e-66 256.5 225 60.0
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 7.3e-66 254.6 197 67.0
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.2e-65 253.8 214 62.6
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 1.6e-65 253.4 213 62.9
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 2.1e-65 253.1 223 59.2
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 2.8e-65 252.7 195 64.1
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 4.7e-65 251.9 215 61.9
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 4.7e-65 251.9 229 59.0
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 8.1e-65 251.1 223 59.2
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 2.4e-64 249.6 223 59.2
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 2.4e-64 249.6 225 58.7
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 4.0e-64 248.8 198 62.6
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 5.2e-64 248.4 225 58.2
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 1.2e-63 247.3 216 59.3
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 2.0e-63 246.5 200 62.5
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 2.0e-63 246.5 198 63.1
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 7.6e-63 244.6 223 60.1
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 1.4e-61 240.4 233 59.2
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 1.9e-61 240.0 211 58.3
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 1.9e-61 240.0 219 56.6
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 3.2e-61 239.2 199 61.8
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.1e-61 238.0 233 56.7
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.2e-60 237.3 223 58.7
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 2.1e-60 236.5 205 62.9
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 6.0e-60 235.0 203 60.6
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 7.8e-60 234.6 218 58.7
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 2.3e-59 233.0 205 60.0
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 3.0e-59 232.6 202 58.9
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 5.1e-59 231.9 223 57.0
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 5.1e-59 231.9 225 56.0
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 5.1e-59 231.9 225 55.6
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 8.7e-59 231.1 198 61.6
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 1.1e-58 230.7 198 59.6
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 1.5e-58 230.3 225 58.2
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 1.9e-58 229.9 198 62.1
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 3.3e-58 229.2 221 56.6
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 4.3e-58 228.8 223 56.5
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 4.3e-58 228.8 198 62.1
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 5.6e-58 228.4 225 56.0
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 7.3e-58 228.0 219 58.0
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 9.6e-58 227.6 226 54.4
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 1.6e-57 226.9 203 59.6
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 2.1e-57 226.5 222 57.2
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 3.6e-57 225.7 219 57.5
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 4.7e-57 225.3 194 58.8
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 4.7e-57 225.3 323 44.0
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 1.1e-56 224.2 221 56.6
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 1.8e-56 223.4 226 54.0
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 1.8e-56 223.4 206 57.3
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 4.0e-56 222.2 200 60.5
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 5.2e-56 221.9 198 60.6
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 9.0e-56 221.1 214 54.2
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 4.4e-55 218.8 232 55.2
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 5.8e-55 218.4 227 56.4
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 7.6e-55 218.0 200 61.0
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 1.3e-54 217.2 202 57.4
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 1.7e-54 216.9 199 57.8
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 3.8e-54 215.7 210 57.1
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 6.4e-54 214.9 224 54.9
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 6.4e-54 214.9 208 56.7
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 2.4e-53 213.0 224 52.2
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 5.4e-53 211.8 230 51.3
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 7.1e-53 211.5 187 59.9
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 9.3e-53 211.1 217 55.8
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 1.2e-52 210.7 229 52.0
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 3.5e-52 209.1 203 57.1
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 5.1e-51 205.3 213 54.5
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 1.5e-50 203.8 223 54.3
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 1.6e-49 200.3 147 67.3
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 1.1e-48 197.6 149 65.8
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 3.1e-48 196.1 221 49.8
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 4.5e-47 192.2 233 49.4
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 1.7e-46 190.3 278 44.2
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 1.4e-45 187.2 208 51.4
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 3.2e-45 186.0 197 52.8
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 7.1e-45 184.9 201 54.7
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.2e-44 184.1 222 49.1
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 3.0e-43 179.5 168 55.4
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 6.7e-43 178.3 122 70.5
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 8.7e-43 177.9 150 60.0
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 2.5e-42 176.4 193 50.8
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 2.5e-42 176.4 144 62.5
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 3.3e-42 176.0 105 76.2
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 3.3e-42 176.0 193 50.8
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 3.3e-42 176.0 193 50.8
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 4.3e-42 175.6 194 52.6
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 2.6e-39 166.4 201 46.8
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 2.4e-37 159.8 111 69.4
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 3.9e-35 152.5 153 54.2
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 6.7e-35 151.8 151 53.6
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 1.3e-33 147.5 228 42.5
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 4.5e-31 139.0 137 54.7
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.0e-30 137.9 222 40.1
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 5.5e-21 105.5 119 50.4
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 7.2e-21 105.1 157 41.4
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 1.0e-19 101.3 81 60.5
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 4.8e-17 92.4 63 71.4
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 8.2e-17 91.7 99 52.5
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 5.9e-15 85.5 179 36.3
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 3.8e-14 82.8 111 48.6
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 5.5e-13 79.0 60 61.7
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 9.4e-13 78.2 151 40.4
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 1.6e-12 77.4 138 39.1
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 7.4e-10 68.6 243 30.5
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 4.8e-09 65.9 117 39.3
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 3.1e-08 63.2 91 44.0
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 5.3e-08 62.4 150 32.7
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 7.7e-07 58.5 136 34.6


User provided reference genes

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