Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0672 Fragaria x ananassa HOM05D007682 ORTHO05D009690 2.3e-25 119.8 63 100.0
FAN24G1339 Fragaria x ananassa HOM05D007682 ORTHO05D009690 2.3e-25 119.8 63 100.0
RcHm_v2.0_Chr6g0276771 Rosa chinensis HOM05D007682 ORTHO05D009690 5.2e-25 118.6 63 98.4
Prupe.8G021600 Prunus persica HOM05D007682 ORTHO05D009690 4.4e-24 115.5 63 95.2
FAN15G0817 Fragaria x ananassa HOM05D007682 ORTHO05D009690 5.7e-24 115.2 63 96.8
Gohir.A08G208100 Gossypium hirsutum HOM05D007682 ORTHO05D009690 1.1e-22 110.9 63 92.1
Potri.005G023000 Populus trichocarpa HOM05D007682 ORTHO05D009690 1.8e-22 110.2 63 92.1
Atru.chr2.100 Acer truncatum HOM05D007682 ORTHO05D009690 2.4e-22 109.8 63 92.1
Gorai.007G301900 Gossypium raimondii HOM05D007682 ORTHO05D009690 4.1e-22 109.0 63 90.5
Manes.08G115600 Manihot esculenta HOM05D007682 ORTHO05D009690 5.3e-22 108.6 61 93.4
arahy.Tifrunner.gnm1.ann1.P6132C Arachis hypogaea HOM05D007682 ORTHO05D009690 1.2e-21 107.5 62 90.3
arahy.Tifrunner.gnm1.ann1.S47DRU Arachis hypogaea HOM05D007682 ORTHO05D009690 1.2e-21 107.5 62 90.3
Gohir.D11G279700 Gossypium hirsutum HOM05D007682 ORTHO05D009690 1.2e-21 107.5 63 88.9
Thecc.05G315600 Theobroma cacao HOM05D007682 ORTHO05D009690 1.2e-21 107.5 63 90.5
TAR633G0769 Trochodendron aralioides HOM05D007682 ORTHO05D009690 1.2e-21 107.5 63 88.9
Gohir.A11G269500 Gossypium hirsutum HOM05D007682 ORTHO05D009690 1.6e-21 107.1 63 88.9
CSS0049840 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 2.6e-21 106.3 63 87.3
Gohir.D08G224900 Gossypium hirsutum HOM05D007682 ORTHO05D009690 3.5e-21 105.9 62 88.7
Hma1.2p1_0472F.1_g159680 Hydrangea macrophylla HOM05D007682 ORTHO05D009690 3.5e-21 105.9 63 87.3
MD10G1017700 Malus domestica HOM05D007682 ORTHO05D009690 3.5e-21 105.9 62 88.7
Nn4g25761 Nelumbo nucifera HOM05D007682 ORTHO05D009690 3.5e-21 105.9 62 87.1
GSVIVG01031165001 Vitis vinifera HOM05D000036 ORTHO05D000441 3.5e-21 105.9 61 91.8
PSO407G0292 Papaver somniferum HOM05D007682 ORTHO05D009690 4.5e-21 105.5 61 90.2
Sabra05G0029000 Salix brachista HOM05D007682 ORTHO05D009690 5.9e-21 105.1 62 90.3
Actinidia21502 Actinidia chinensis HOM05D007682 ORTHO05D009690 7.7e-21 104.8 62 88.7
Glyma.19G231600 Glycine max HOM05D007682 ORTHO05D009690 1.0e-20 104.4 62 87.1
PSO170G1207 Papaver somniferum HOM05D007682 ORTHO05D009690 1.0e-20 104.4 61 88.5
Peaxi162Scf00037g01515 Petunia axillaris HOM05D007682 ORTHO05D009690 1.0e-20 104.4 61 88.5
Phvul.006G088300 Phaseolus vulgaris HOM05D007682 ORTHO05D009690 1.0e-20 104.4 62 87.1
Gorai.004G238900 Gossypium raimondii HOM05D007682 ORTHO05D009690 1.3e-20 104.0 62 87.1
Haze_04118 Corylus avellana HOM05D007682 ORTHO05D009690 1.7e-20 103.6 63 84.1
Eucgr.H03256 Eucalyptus grandis HOM05D007682 ORTHO05D009690 1.7e-20 103.6 63 85.7
Sed0011876 Sechium edule HOM05D007682 ORTHO05D009690 1.7e-20 103.6 61 88.5
Lalb_Chr15g0077471 Lupinus albus HOM05D007682 ORTHO05D009690 2.2e-20 103.2 61 90.2
Medtr7g112600 Medicago truncatula HOM05D007682 ORTHO05D009690 2.2e-20 103.2 61 88.5
Psat3g011680 Pisum sativum HOM05D007682 ORTHO05D009690 2.2e-20 103.2 61 88.5
BcaNung04745 Brassica carinata HOM05D007682 ORTHO05D009690 2.9e-20 102.8 59 89.8
Lsat_1_v5_gn_7_72960 Lactuca sativa HOM05D007682 ORTHO05D009690 2.9e-20 102.8 63 84.1
THA.LOC104821730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 2.9e-20 102.8 62 87.1
Glyma.03G234200 Glycine max HOM05D007682 ORTHO05D009690 3.8e-20 102.4 62 85.5
Nitab4.5_0003113g0070 Nicotiana tabacum HOM05D007682 ORTHO05D009690 3.8e-20 102.4 61 86.9
Duzib177G0692 Durio zibethinus HOM05D007682 ORTHO05D009690 5.0e-20 102.1 59 91.5
PGR031G1366 Punica granatum HOM05D007682 ORTHO05D009690 5.0e-20 102.1 63 84.1
TPR.G1619 Trifolium pratense HOM05D007682 ORTHO05D009690 5.0e-20 102.1 61 86.9
CAN.G1273.42 Capsicum annuum HOM05D007682 ORTHO05D009690 6.5e-20 101.7 63 84.1
Sp2g20980 Schrenkiella parvula HOM05D007682 ORTHO05D009690 6.5e-20 101.7 59 89.8
THA.LOC104818730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 6.5e-20 101.7 63 84.1
TWI56G1223 Tripterygium wilfordii HOM05D007682 ORTHO05D009690 6.5e-20 101.7 61 86.9
A06p37270 Brassica napus HOM05D007682 ORTHO05D009690 1.1e-19 100.9 59 88.1
C07p41180 Brassica napus HOM05D007682 ORTHO05D009690 1.1e-19 100.9 59 88.1
BolC7t44646H Brassica oleracea HOM05D007682 ORTHO05D009690 1.1e-19 100.9 59 88.1
BraA06t26650Z Brassica rapa HOM05D007682 ORTHO05D009690 1.1e-19 100.9 59 88.1
Solyc01g099930.3 Solanum lycopersicum HOM05D007682 ORTHO05D009690 1.5e-19 100.5 63 82.5
SGA_v2.0_scaffold81G26104 Striga asiatica HOM05D007682 ORTHO05D009690 1.5e-19 100.5 63 81.0
HPP92_010663 Vanilla planifolia HOM05D007682 ORTHO05D009690 1.5e-19 100.5 65 84.6
CDE05G1347 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 2.5e-19 99.8 58 87.9
AT5G27860 Arabidopsis thaliana HOM05D007682 ORTHO05D009690 3.2e-19 99.4 59 88.1
CiPaw.08G159600 Carya illinoinensis HOM05D007682 ORTHO05D009690 3.2e-19 99.4 63 81.0
CsaV3_1G038640 Cucumis sativus L. HOM05D007682 ORTHO05D009690 3.2e-19 99.4 61 85.2
CARHR186340 Cardamine hirsuta HOM05D007682 ORTHO05D009690 4.2e-19 99.0 59 88.1
CDE11G0615 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 4.2e-19 99.0 61 83.6
DCAR_022138 Daucus carota HOM05D007682 ORTHO05D009690 4.2e-19 99.0 63 81.0
Oeu010924.1 Olea europaea HOM05D007682 ORTHO05D009690 4.2e-19 99.0 61 83.6
Os12g0516700 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 4.2e-19 99.0 62 79.0
Os12g0554000 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 4.2e-19 99.0 62 79.0
Aa31LG11G9610 Aethionema arabicum HOM05D007682 ORTHO05D009690 5.5e-19 98.6 59 86.4
HanXRQChr11g0340111 Helianthus annuus HOM05D007682 ORTHO05D009690 5.5e-19 98.6 63 79.4
ECA236G4368 Erigeron canadensis HOM05D000036 ORTHO05D000441 7.2e-19 98.2 63 79.4
QL03p019528 Quercus lobata HOM05D007682 ORTHO05D009690 7.2e-19 98.2 62 79.0
AUR62000737 Chenopodium quinoa HOM05D007682 ORTHO05D009690 9.4e-19 97.8 60 83.3
Dinv30837 Davidia involucrata HOM05D007682 ORTHO05D009690 1.6e-18 97.1 63 79.4
Cfa006654 Carpinus fangiana HOM05D007682 ORTHO05D009690 2.1e-18 96.7 63 79.4
MSTRG.27972 Avicennia marina HOM05D007682 ORTHO05D009690 3.6e-18 95.9 59 83.1
Cc02_g34370 Coffea canephora HOM05D007682 ORTHO05D009690 3.6e-18 95.9 59 84.7
AUR62005227 Chenopodium quinoa HOM05D007682 ORTHO05D009690 4.7e-18 95.5 60 80.0
Migut.N02098 Erythranthe guttata HOM05D007682 ORTHO05D009690 6.1e-18 95.1 61 80.3
Sc16g0008750 Simmondsia chinensis HOM05D000036 ORTHO05D001038 8.0e-18 94.7 61 80.3
Nitab4.5_0003497g0050 Nicotiana tabacum HOM05D007682 ORTHO05D009690 1.4e-17 94.0 62 79.0
SMO367G0406 Selaginella moellendorffii HOM05D007682 ORTHO05D009690 3.0e-17 92.8 62 75.8
Lj1g0016295 Lotus japonicus HOM05D007682 ORTHO05D009690 8.8e-17 91.3 67 76.1
SEGI_39810 Sequoiadendron giganteum HOM05D007682 ORTHO05D009690 1.2e-16 90.9 59 76.3
AL6G39080 Arabidopsis lyrata HOM05D007682 ORTHO05D009690 3.3e-16 89.4 59 81.4
CSS0031357 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 5.7e-16 88.6 63 73.0
MBI19_g44105_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 1.3e-15 87.4 54 83.3
Zm00001eb410110 Zea mays HOM05D007682 ORTHO05D009690 1.3e-15 87.4 64 70.3
Ah.06g189950 Amaranthus hybridus HOM05D007682 ORTHO05D009690 3.7e-15 85.9 51 86.3
ATR0693G225 Amborella trichopoda HOM05D007682 ORTHO05D009690 8.2e-15 84.7 52 84.6
EL10Ac4g09894 Beta vulgaris HOM05D007682 ORTHO05D009690 8.2e-15 84.7 51 84.3
Hund07111 Selenicereus undatus HOM05D007682 ORTHO05D009690 1.4e-14 84.0 79 62.0
unitig_699.g19250 Utricularia gibba HOM05D007682 ORTHO05D009690 3.1e-14 82.8 50 82.0
HPP92_010684 Vanilla planifolia HOM05D007682 ORTHO05D009690 1.2e-13 80.9 53 84.9
DCAR_022140 Daucus carota HOM05D007682 ORTHO05D009690 7.7e-13 78.2 55 74.5
MBI19_g47767_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 1.6e-10 70.5 54 72.2
FvH4_2g14440 Fragaria vesca HOM05D007682 ORTHO05D009690 8.0e-10 68.2 36 91.7
VMungo0540G1787 Vigna mungo HOM05D007682 ORTHO05D009690 2.2e-07 60.1 33 87.9
COL.COLO4_10551 Corchorus olitorius HOM05D007682 ORTHO05D009690 1.1e-06 57.8 33 90.9


User provided reference genes

Program Settings