Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G1318 Fragaria x ananassa HOM05D006107 ORTHO05D007455 0.0e+00 1137.9 569 100.0
FvH4_2g05870 Fragaria vesca HOM05D006107 ORTHO05D007455 0.0e+00 1125.9 569 99.1
FAN20G2345 Fragaria x ananassa HOM05D006107 ORTHO05D007455 0.0e+00 1115.9 569 98.1
FAN15G1599 Fragaria x ananassa HOM05D006107 ORTHO05D007455 0.0e+00 1115.1 569 98.1
RcHm_v2.0_Chr6g0257681 Rosa chinensis HOM05D006107 ORTHO05D007455 3.6e-308 1060.8 569 92.4
RcHm_v2.0_Chr6g0257701 Rosa chinensis HOM05D006107 ORTHO05D007455 1.9e-301 1038.5 569 90.0
Prupe.8G126800 Prunus persica HOM05D006107 ORTHO05D007455 5.4e-296 1020.4 576 88.9
MD05G1082300 Malus domestica HOM05D006107 ORTHO05D007455 1.6e-292 1008.8 573 88.3
CsaV3_7G008530 Cucumis sativus L. HOM05D006107 ORTHO05D007455 3.1e-283 978.0 578 83.6
Hma1.2p1_0474F.1_g160480 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 3.1e-283 978.0 560 85.5
QL11p035424 Quercus lobata HOM05D006107 ORTHO05D007455 4.0e-283 977.6 573 84.6
Sabra09G0076700 Salix brachista HOM05D006107 ORTHO05D007455 1.5e-282 975.7 574 83.8
Potri.009G100800 Populus trichocarpa HOM05D006107 ORTHO05D007455 3.4e-282 974.5 574 83.8
Thecc.02G102000 Theobroma cacao HOM05D006107 ORTHO05D007455 3.4e-282 974.5 578 82.5
CSS0002619 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 2.9e-281 971.5 550 86.2
Duzib132G0557 Durio zibethinus HOM05D006107 ORTHO05D007455 6.4e-281 970.3 578 81.8
CSS0005791 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 1.1e-280 969.5 550 86.0
TWI31G1484 Tripterygium wilfordii HOM05D006107 ORTHO05D007455 9.2e-280 966.5 582 82.6
Eucgr.G01434 Eucalyptus grandis HOM05D006107 ORTHO05D007455 1.6e-279 965.7 572 83.6
Rhsim05G0085900 Rhododendron simsii HOM05D006107 ORTHO05D007455 1.6e-279 965.7 546 86.4
Sed0010263 Sechium edule HOM05D006107 ORTHO05D007455 1.6e-279 965.7 579 82.7
ClCG02G006000 Citrullus lanatus HOM05D006107 ORTHO05D007455 7.8e-279 963.4 615 79.3
Ciclev10028103m.g Citrus clementina HOM05D006107 ORTHO05D007455 1.3e-278 962.6 569 83.8
Atru.chr5.2684 Acer truncatum HOM05D006107 ORTHO05D007455 1.7e-278 962.2 571 83.9
arahy.Tifrunner.gnm1.ann1.Q9TTL4 Arachis hypogaea HOM05D006107 ORTHO05D007455 2.3e-278 961.8 558 84.8
Gohir.A12G023600 Gossypium hirsutum HOM05D006107 ORTHO05D007455 5.1e-278 960.7 547 84.5
GSVIVG01031728001 Vitis vinifera HOM05D006107 ORTHO05D007455 5.1e-278 960.7 571 83.0
Gorai.008G024600 Gossypium raimondii HOM05D006107 ORTHO05D007455 5.6e-277 957.2 547 84.3
Gohir.D12G024200 Gossypium hirsutum HOM05D006107 ORTHO05D007455 9.6e-277 956.4 547 84.1
CANSAT25G2960 Cannabis sativa HOM05D006107 ORTHO05D007455 1.4e-275 952.6 576 81.8
PGR042G0079 Punica granatum HOM05D006107 ORTHO05D007455 1.4e-275 952.6 577 81.5
Haze_10087 Corylus avellana HOM05D006107 ORTHO05D007455 6.9e-275 950.3 571 82.8
Lalb_Chr16g0384781 Lupinus albus HOM05D006107 ORTHO05D007455 5.8e-274 947.2 546 85.0
Lj5A210T89 Lonicera japonica HOM05D006107 ORTHO05D007455 2.2e-273 945.3 580 80.2
MBI03_g13479_MAGBIO Magnolia biondii HOM05D006107 ORTHO05D007455 8.4e-273 943.3 575 79.5
TAR376G0662 Trochodendron aralioides HOM05D006107 ORTHO05D007455 2.4e-272 941.8 570 80.5
Lj4g0016203 Lotus japonicus HOM05D006107 ORTHO05D007455 7.1e-272 940.3 561 83.6
THA.LOC104807265 Tarenaya hassleriana HOM05D006107 ORTHO05D007455 1.2e-271 939.5 584 79.3
arahy.Tifrunner.gnm1.ann1.H5D5IL Arachis hypogaea HOM05D006107 ORTHO05D007455 1.3e-270 936.0 584 80.3
BcaB03g11861 Brassica carinata HOM05D006107 ORTHO05D007455 1.3e-270 936.0 582 79.0
AT4G34030 Arabidopsis thaliana HOM05D006107 ORTHO05D007455 8.7e-270 933.3 548 81.6
Thhalv10024753m.g Eutrema salsugineum HOM05D006107 ORTHO05D007455 1.5e-269 932.6 548 81.6
Medtr4g085890 Medicago truncatula HOM05D006107 ORTHO05D007455 2.5e-269 931.8 569 81.9
Sp7g31760 Schrenkiella parvula HOM05D006107 ORTHO05D007455 4.3e-269 931.0 588 77.2
AL7G17360 Arabidopsis lyrata HOM05D006107 ORTHO05D007455 5.6e-269 930.6 548 81.6
SGA_v2.0_scaffold90G27632 Striga asiatica HOM05D006107 ORTHO05D007455 9.6e-269 929.9 575 80.0
BraA08t33679Z Brassica rapa HOM05D006107 ORTHO05D007455 2.8e-268 928.3 583 78.0
A08p17180 Brassica napus HOM05D006107 ORTHO05D007455 1.1e-267 926.4 583 77.9
VMungo0251G2128 Vigna mungo HOM05D006107 ORTHO05D007455 2.4e-267 925.2 525 86.5
Ca_18695_v3 Cicer arietinum L. HOM05D006107 ORTHO05D007455 3.1e-267 924.9 521 86.6
Cfa004529 Carpinus fangiana HOM05D006107 ORTHO05D007455 4.0e-267 924.5 508 88.6
Glyma.07G213500 Glycine max HOM05D006107 ORTHO05D007455 4.0e-267 924.5 525 86.1
Psat7g125400 Pisum sativum HOM05D006107 ORTHO05D007455 6.9e-267 923.7 569 81.0
C03p86150 Brassica napus HOM05D006107 ORTHO05D007455 1.2e-266 922.9 585 77.4
Carub.0007s0637 Capsella rubella HOM05D006107 ORTHO05D007455 1.2e-266 922.9 588 76.4
Glyma.02G131500 Glycine max HOM05D006107 ORTHO05D007455 1.2e-266 922.9 522 86.8
Phvul.003G291600 Phaseolus vulgaris HOM05D006107 ORTHO05D007455 1.2e-266 922.9 522 87.0
BcaC01g00937 Brassica carinata HOM05D006107 ORTHO05D007455 1.5e-266 922.5 586 76.8
Peaxi162Scf00016g01935 Petunia axillaris HOM05D006107 ORTHO05D007455 2.6e-266 921.8 547 81.9
Migut.B00356 Erythranthe guttata HOM05D006107 ORTHO05D007455 3.4e-266 921.4 578 79.2
Aa31LG2G16450 Aethionema arabicum HOM05D006107 ORTHO05D007455 4.5e-266 921.0 548 80.3
Sc18g0004170 Simmondsia chinensis HOM05D006107 ORTHO05D007455 4.5e-266 921.0 573 78.9
BolC3t20903H Brassica oleracea HOM05D006107 ORTHO05D007455 7.6e-266 920.2 586 76.6
A03p62570 Brassica napus HOM05D006107 ORTHO05D007455 2.2e-265 918.7 588 76.5
vmacro19505 Vaccinium macrocarpon HOM05D006107 ORTHO05D007455 2.2e-265 918.7 684 70.3
TPR.G12695 Trifolium pratense HOM05D006107 ORTHO05D007455 2.9e-265 918.3 522 86.0
PSO675G2583 Papaver somniferum HOM05D006107 ORTHO05D007455 7.1e-264 913.7 575 78.4
COL.COLO4_32644 Corchorus olitorius HOM05D006107 ORTHO05D007455 9.3e-264 913.3 582 78.4
SalBow6G1673 Salvia bowleyana HOM05D006107 ORTHO05D007455 1.3e-262 909.4 548 81.6
C07p60130 Brassica napus HOM05D006107 ORTHO05D007455 1.8e-262 909.1 548 79.9
BolC7t46453H Brassica oleracea HOM05D006107 ORTHO05D007455 1.8e-262 909.1 548 79.9
EL10Ac1g02230 Beta vulgaris HOM05D006107 ORTHO05D007455 3.0e-262 908.3 554 80.0
FAN27G3033 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.1e-261 906.4 521 88.5
Hund06173 Selenicereus undatus HOM05D006107 ORTHO05D007455 9.6e-261 903.3 570 78.1
Aqoxy6G01306 Aquilegia oxysepala HOM05D006107 ORTHO05D007455 1.6e-260 902.5 583 75.3
PSO541G4551 Papaver somniferum HOM05D006107 ORTHO05D007455 1.6e-260 902.5 576 77.1
HPP92_004071 Vanilla planifolia HOM05D006107 ORTHO05D007455 1.6e-260 902.5 540 81.3
ECA236G2832 Erigeron canadensis HOM05D006107 ORTHO05D007455 2.1e-260 902.1 546 78.8
Lsat_1_v5_gn_7_86820 Lactuca sativa HOM05D006107 ORTHO05D007455 3.6e-260 901.4 535 80.7
Sopen01g050230 Solanum pennellii HOM05D006107 ORTHO05D007455 1.8e-259 899.0 574 76.8
HanXRQChr11g0331361 Helianthus annuus HOM05D006107 ORTHO05D007455 5.3e-259 897.5 565 76.6
Cc02_g18880 Coffea canephora HOM05D006107 ORTHO05D007455 6.9e-259 897.1 521 84.1
Solyc01g108030.4 Solanum lycopersicum HOM05D006107 ORTHO05D007455 9.0e-259 896.7 574 76.8
CAN.G1041.37 Capsicum annuum HOM05D006107 ORTHO05D007455 2.6e-258 895.2 576 76.9
Nitab4.5_0018866g0010 Nicotiana tabacum HOM05D006107 ORTHO05D007455 1.1e-256 889.8 588 75.3
AUR62035403 Chenopodium quinoa HOM05D006107 ORTHO05D007455 9.3e-256 886.7 569 76.4
Dinv42164 Davidia involucrata HOM05D006107 ORTHO05D007455 1.8e-254 882.5 568 78.2
ATR1126G046 Amborella trichopoda HOM05D006107 ORTHO05D007455 8.7e-254 880.2 567 76.4
DCAR_001629 Daucus carota HOM05D006107 ORTHO05D007455 2.8e-252 875.2 518 81.7
PGSC0003DMG400025888 Solanum tuberosum HOM05D006107 ORTHO05D007455 1.2e-250 869.8 521 80.4
Zm00001eb179170 Zea mays HOM05D006107 ORTHO05D007455 3.4e-250 868.2 555 76.6
Nitab4.5_0001428g0130 Nicotiana tabacum HOM05D006107 ORTHO05D007455 2.7e-247 858.6 575 74.4
BcaNung03357 Brassica carinata HOM05D006107 ORTHO05D007455 1.8e-246 855.9 549 76.7
CDE10G1185 Ceratophyllum demersum HOM05D006107 ORTHO05D007455 5.7e-245 850.9 559 74.1
Cpa.g.sc62.2 Carica papaya HOM05D006107 ORTHO05D007455 7.2e-240 833.9 486 84.6
unitig_21.g20740 Utricularia gibba HOM05D006107 ORTHO05D007455 7.2e-240 833.9 568 74.3
MELO3C018456.2 Cucumis melo HOM05D006107 ORTHO05D007455 3.6e-239 831.6 499 83.0
Pp3c3_22750 Physcomitrium patens HOM05D006107 ORTHO05D007455 1.0e-238 830.1 548 73.0
Mapoly0009s0150 Marchantia polymorpha HOM05D006107 ORTHO05D007455 1.1e-235 820.1 548 72.3
CARHR242170 Cardamine hirsuta HOM05D006107 ORTHO05D007455 4.1e-235 818.1 468 83.3
Oeu007292.2 Olea europaea HOM05D006107 ORTHO05D007455 1.5e-234 816.2 469 84.2
Nn5g30280 Nelumbo nucifera HOM05D006107 ORTHO05D007455 2.2e-233 812.4 468 84.6
CiPaw.05G007100 Carya illinoinensis HOM05D006107 ORTHO05D007455 5.1e-230 801.2 439 88.8
AagrBONN_evm.TU.Sc2ySwM_368.3420 Anthoceros agrestis HOM05D006107 ORTHO05D007455 1.5e-226 789.6 545 69.5
Manes.07G078100 Manihot esculenta HOM05D006107 ORTHO05D007455 1.1e-224 783.5 443 86.9
SEGI_09747 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 3.9e-222 775.0 466 80.3
HPP92_004116 Vanilla planifolia HOM05D006107 ORTHO05D007455 7.4e-221 770.8 540 71.7
SMO174G0062 Selaginella moellendorffii HOM05D006107 ORTHO05D007455 4.5e-202 708.4 542 64.4
Cre03.g181200 Chlamydomonas reinhardtii HOM05D006107 ORTHO05D007455 6.6e-193 677.9 562 58.9
AUR62041887 Chenopodium quinoa HOM05D006107 ORTHO05D007455 3.0e-190 669.1 464 72.0
Actinidia17868 Actinidia chinensis HOM05D006107 ORTHO05D007455 3.1e-182 642.5 580 61.2
PRCOL_00006414 Prasinoderma coloniale HOM05D006107 ORTHO05D007455 1.7e-169 600.1 524 57.6
Haze_26655 Corylus avellana HOM05D006107 ORTHO05D007455 1.9e-168 596.7 552 55.1
Haze_27116 Corylus avellana HOM05D006107 ORTHO05D007455 5.4e-155 552.0 461 58.6
Haze_27030 Corylus avellana HOM05D006107 ORTHO05D007455 2.4e-147 526.6 510 53.3
Ah.00g000150 Amaranthus hybridus HOM05D006107 ORTHO05D007455 2.9e-140 503.1 332 75.0
Hma1.2p1_0474F.1_g160470 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 1.1e-131 474.6 285 82.8
Haze_26656 Corylus avellana HOM05D006107 ORTHO05D007455 1.0e-84 318.5 254 60.6
QL11p035444 Quercus lobata HOM05D006107 ORTHO05D007455 2.2e-79 300.8 158 90.5
CBR_g54985 Chara braunii HOM05D006107 ORTHO05D007455 6.0e-53 213.0 504 29.4
Medtr3g011860 Medicago truncatula HOM05D006107 ORTHO05D007455 9.0e-41 172.6 208 48.1
QL11p035447 Quercus lobata HOM05D006107 ORTHO05D007455 4.0e-33 147.1 90 77.8
Cfa025742 Carpinus fangiana HOM05D006107 ORTHO05D007455 1.7e-31 141.7 435 26.2
CARHR242160 Cardamine hirsuta HOM05D006107 ORTHO05D007455 5.3e-25 120.2 122 54.9
QL11p035449 Quercus lobata HOM05D006107 ORTHO05D007455 1.2e-21 109.0 66 75.8
SEGI_09117 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 1.4e-17 95.5 79 58.2
CDE05G3043 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 3.0e-12 77.8 368 25.5
QL11p035429 Quercus lobata HOM05D006107 ORTHO05D007455 2.4e-09 68.2 65 60.0
Cfa022865 Carpinus fangiana HOM05D003397 ORTHO05D004390 1.7e-07 62.0 299 24.7
Solyc01g108060.2 Solanum lycopersicum HOM05D006107 ORTHO05D007455 6.5e-07 60.1 30 90.0
MCO15G166 Micromonas commoda HOM05D003397 ORTHO05D004390 1.1e-06 59.3 496 21.4


User provided reference genes

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