Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.4e-182 642.9 334 100.0
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 1.8e-150 536.2 395 79.0
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 7.9e-122 441.0 456 58.3
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 5.1e-121 438.3 463 56.6
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.1e-118 428.7 477 55.8
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.2e-117 427.2 474 55.7
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 2.2e-116 422.9 456 57.2
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.8e-113 413.3 459 55.8
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 1.4e-70 270.8 460 40.7
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.9e-70 270.4 470 41.9
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 9.9e-56 221.5 351 41.3
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 4.1e-54 216.1 462 37.7
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 1.6e-50 204.1 429 36.1
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 1.1e-49 201.4 458 35.6
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 5.2e-49 199.1 432 35.9
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 3.8e-47 193.0 456 33.8
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.8e-47 193.0 429 33.8
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.9e-46 190.7 429 33.6
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 3.2e-46 189.9 431 35.0
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 9.3e-46 188.3 475 33.7
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 2.7e-45 186.8 465 31.4
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 7.8e-45 185.3 460 34.6
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 1.3e-44 184.5 468 32.7
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 1.3e-44 184.5 441 35.4
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 2.3e-44 183.7 478 33.1
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.0e-44 183.3 429 32.9
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.6e-44 182.2 460 32.6
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 3.3e-43 179.9 373 34.9
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 2.1e-42 177.2 477 32.3
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 2.8e-42 176.8 468 32.9
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 8.1e-42 175.3 451 32.2
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.4e-41 174.5 446 33.6
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.8e-41 174.1 463 32.8
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 2.4e-41 173.7 463 32.8
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 5.3e-41 172.6 443 34.3
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 7.6e-40 168.7 429 32.6
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 6.4e-39 165.6 409 31.1
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 8.4e-39 165.2 417 32.6
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.1e-38 164.9 426 31.7
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 1.1e-38 164.9 469 31.8
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 1.4e-38 164.5 436 31.2
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 4.2e-38 162.9 405 32.6
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 5.4e-38 162.5 432 31.5
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 2.7e-37 160.2 407 31.2
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 1.0e-36 158.3 394 32.0
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 1.3e-36 157.9 468 31.4
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 1.3e-36 157.9 458 30.6
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 1.1e-35 154.8 374 30.2
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.5e-35 154.5 424 31.8
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.5e-35 153.7 470 31.3
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 3.3e-35 153.3 450 31.8
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 5.6e-35 152.5 421 33.5
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 5.6e-35 152.5 425 33.6
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 5.6e-35 152.5 421 33.5
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 5.6e-35 152.5 429 31.2
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 5.6e-35 152.5 414 31.9
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 7.4e-35 152.1 444 31.5
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.8e-34 150.2 456 31.1
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 2.8e-34 150.2 409 31.5
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 3.6e-34 149.8 421 32.3
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 6.2e-34 149.1 420 31.9
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 1.1e-33 148.3 434 29.3
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 1.1e-33 148.3 464 30.8
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.4e-33 147.9 429 29.8
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.4e-33 147.9 429 29.8
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 1.8e-33 147.5 403 30.5
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 3.1e-33 146.7 457 30.2
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 4.0e-33 146.4 373 33.2
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 6.9e-33 145.6 451 30.4
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 9.0e-33 145.2 442 31.0
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.2e-32 144.8 356 31.5
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 1.2e-32 144.8 468 29.9
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.5e-32 144.4 435 29.9
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 2.0e-32 144.1 447 30.0
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 2.0e-32 144.1 419 29.4
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 2.6e-32 143.7 441 30.2
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 2.6e-32 143.7 459 29.4
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 2.6e-32 143.7 446 29.6
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 3.4e-32 143.3 437 30.7
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 4.5e-32 142.9 431 31.3
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 5.8e-32 142.5 434 31.6
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 9.9e-32 141.7 472 30.7
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 2.2e-31 140.6 451 29.0
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 4.9e-31 139.4 466 28.8
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 2.4e-30 137.1 397 29.7
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 9.3e-30 135.2 156 47.4
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 9.3e-30 135.2 432 30.1
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 2.1e-29 134.0 390 30.0
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 2.1e-29 134.0 449 31.0
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 3.5e-29 133.3 369 30.6
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.6e-29 132.9 388 29.9
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 7.9e-29 132.1 449 29.0
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 1.3e-28 131.3 462 27.3
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 1.8e-28 131.0 482 28.0
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 1.9e-27 127.5 371 28.8
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 7.4e-27 125.6 438 29.2
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 9.6e-27 125.2 421 28.3
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 1.8e-25 120.9 450 29.3
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 3.1e-25 120.2 374 28.6
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 5.8e-24 115.9 346 28.9
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.2e-23 114.0 182 37.4
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 2.9e-23 113.6 433 28.4
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 8.4e-23 112.1 171 42.1
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 5.5e-22 109.4 267 34.1
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 7.1e-22 109.0 449 27.2
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 9.3e-22 108.6 291 30.6
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.2e-21 108.2 378 29.9
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 1.2e-21 108.2 445 27.6
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 3.5e-21 106.7 363 27.8
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 6.0e-21 105.9 449 27.4
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.3e-20 104.0 157 37.6
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.3e-20 104.0 288 31.9
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.5e-19 101.3 385 26.8
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 9.6e-19 98.6 157 36.9
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.7e-18 96.7 366 26.5
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 1.8e-17 94.4 143 40.6
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 3.1e-17 93.6 154 41.6
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 5.3e-17 92.8 143 39.2
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 4.5e-16 89.7 200 34.0
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 4.5e-16 89.7 213 35.2
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 1.3e-15 88.2 317 29.0
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 1.7e-15 87.8 123 41.5
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.1e-14 85.1 148 40.5
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.9e-14 84.3 84 53.6
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 7.2e-14 82.4 157 36.9
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 2.7e-13 80.5 95 48.4
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 4.6e-13 79.7 166 34.3
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 7.9e-13 79.0 143 39.2
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.0e-12 78.6 342 27.8
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.9e-12 76.6 150 34.0
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 8.7e-12 75.5 148 33.8
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 1.5e-11 74.7 104 43.3
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.5e-11 74.7 141 36.2
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 3.3e-11 73.6 129 34.9
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.3e-11 73.2 176 34.7
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 5.7e-11 72.8 215 29.8
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 2.2e-10 70.9 129 33.3
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.1e-09 67.0 145 35.2
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 2.0e-08 64.3 132 35.6
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 5.0e-07 59.7 44 61.4
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.1e-06 58.5 70 44.3
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 9.4e-06 55.5 133 30.1


User provided reference genes

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