Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0977 Fragaria x ananassa HOM05D007083 ORTHO05D008801 6.4e-109 399.1 199 100.0
FvH4_2g07360 Fragaria vesca HOM05D007083 ORTHO05D008801 1.8e-103 380.9 202 96.0
FAN20G1975 Fragaria x ananassa HOM05D007083 ORTHO05D008801 2.1e-99 367.5 203 91.6
RcHm_v2.0_Chr6g0259961 Rosa chinensis HOM05D007083 ORTHO05D008801 6.7e-82 309.3 199 78.4
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 4.4e-57 226.9 213 54.9
QL11p039208 Quercus lobata HOM05D007083 ORTHO05D008801 2.0e-49 201.4 225 50.2
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 3.1e-47 194.1 181 51.4
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 4.1e-47 193.7 209 47.8
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 5.4e-47 193.4 209 48.8
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 7.0e-47 193.0 209 48.8
Cfa004946 Carpinus fangiana HOM05D007083 ORTHO05D008801 9.1e-47 192.6 224 47.3
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 1.9e-44 184.9 225 44.0
CiPaw.06G139300 Carya illinoinensis HOM05D007083 ORTHO05D008801 2.5e-44 184.5 225 45.3
Haze_02465 Corylus avellana HOM05D007083 ORTHO05D008801 4.2e-44 183.7 158 55.7
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 1.2e-43 182.2 213 44.1
Cpa.g.sc109.26 Carica papaya HOM05D007083 ORTHO05D008801 5.2e-42 176.8 221 43.9
Sabra18G0050700 Salix brachista HOM05D007083 ORTHO05D008801 6.8e-42 176.4 192 46.4
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 8.8e-42 176.0 218 45.0
GSVIVG01029769001 Vitis vinifera HOM05D007083 ORTHO05D008801 8.8e-42 176.0 179 48.6
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 3.4e-41 174.1 222 43.2
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 3.4e-41 174.1 222 43.2
Potri.004G147700 Populus trichocarpa HOM05D007083 ORTHO05D008801 3.4e-41 174.1 192 45.8
Dinv23578 Davidia involucrata HOM05D007083 ORTHO05D008801 1.7e-40 171.8 224 42.0
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 2.8e-40 171.0 210 45.2
Rhsim05G0078900 Rhododendron simsii HOM05D007083 ORTHO05D008801 2.8e-40 171.0 218 43.1
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 1.8e-39 168.3 182 48.4
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 1.8e-39 168.3 197 46.7
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 1.8e-39 168.3 175 48.0
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 1.3e-37 162.2 217 43.8
Sed0019239 Sechium edule HOM05D007083 ORTHO05D008801 1.3e-37 162.2 152 52.6
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 2.3e-37 161.4 207 42.5
Eucgr.J00091 Eucalyptus grandis HOM05D007083 ORTHO05D008801 2.3e-37 161.4 215 42.8
Phvul.001G085800 Phaseolus vulgaris HOM05D007083 ORTHO05D008801 2.3e-37 161.4 189 47.6
TWI31G0787 Tripterygium wilfordii HOM05D007083 ORTHO05D008801 3.8e-37 160.6 177 46.9
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 5.0e-37 160.2 179 46.9
VMungo1383G2401 Vigna mungo HOM05D007083 ORTHO05D008801 1.5e-36 158.7 187 47.1
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 1.9e-36 158.3 178 46.6
BraA07t28306Z Brassica rapa HOM05D007083 ORTHO05D008801 1.9e-36 158.3 179 46.4
CsaV3_7G010110 Cucumis sativus L. HOM05D007083 ORTHO05D008801 5.6e-36 156.8 182 45.6
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 1.2e-35 155.6 208 40.9
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 1.2e-35 155.6 184 44.6
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 2.1e-35 154.8 179 45.8
Atru.chr5.2875 Acer truncatum HOM05D007083 ORTHO05D008801 3.6e-35 154.1 176 44.9
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 4.7e-35 153.7 179 45.3
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 4.7e-35 153.7 179 45.3
MELO3C018417.2 Cucumis melo HOM05D007083 ORTHO05D008801 4.7e-35 153.7 203 42.4
Medtr4g068360 Medicago truncatula HOM05D007083 ORTHO05D008801 4.7e-35 153.7 182 44.5
Cc02_g18190 Coffea canephora HOM05D007083 ORTHO05D008801 1.8e-34 151.8 189 42.3
Ciclev10030406m.g Citrus clementina HOM05D007083 ORTHO05D008801 2.3e-34 151.4 195 41.5
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 6.8e-34 149.8 181 44.2
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 1.5e-33 148.7 181 43.1
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 5.7e-33 146.7 192 44.3
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 7.5e-33 146.4 180 42.8
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 9.8e-33 146.0 172 44.8
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 1.3e-32 145.6 192 38.0
QL11p039212 Quercus lobata HOM05D007083 ORTHO05D008801 1.3e-32 145.6 225 42.2
Atru.chr13.1400 Acer truncatum HOM05D007083 ORTHO05D008801 1.7e-32 145.2 202 43.1
Glyma.12G048300 Glycine max HOM05D007083 ORTHO05D008801 1.7e-32 145.2 202 42.1
Lsat_1_v5_gn_0_45320 Lactuca sativa HOM05D007083 ORTHO05D008801 2.2e-32 144.8 189 41.8
Lsat_1_v5_gn_5_117460 Lactuca sativa HOM05D007083 ORTHO05D008801 2.2e-32 144.8 189 41.8
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 4.9e-32 143.7 184 39.1
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 6.4e-32 143.3 187 38.5
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 1.1e-31 142.5 182 41.8
MSTRG.5378 Avicennia marina HOM05D007083 ORTHO05D008801 1.4e-31 142.1 205 39.5
Potri.009G109001 Populus trichocarpa HOM05D007083 ORTHO05D008801 2.4e-31 141.4 158 43.7
Lj3g0002320 Lotus japonicus HOM05D007083 ORTHO05D008801 4.1e-31 140.6 199 43.7
DCAR_003627 Daucus carota HOM05D007083 ORTHO05D008801 5.4e-31 140.2 209 38.8
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 1.2e-30 139.0 204 38.2
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 4.6e-30 137.1 166 39.8
ClCG02G005520 Citrullus lanatus HOM05D007083 ORTHO05D008801 4.6e-30 137.1 165 43.0
Sabra04G0098000 Salix brachista HOM05D007083 ORTHO05D008801 5.9e-30 136.7 132 48.5
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 7.8e-30 136.3 169 39.1
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 1.3e-29 135.6 183 39.3
TAR369G0752 Trochodendron aralioides HOM05D007083 ORTHO05D008801 1.3e-29 135.6 159 43.4
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 7.3e-28 129.8 169 41.4
SHI08173 Sapria himalayana HOM05D007083 ORTHO05D008801 7.3e-28 129.8 191 36.6
ECA236G1626 Erigeron canadensis HOM05D007083 ORTHO05D008801 1.2e-27 129.0 167 39.5
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 3.6e-27 127.5 199 39.2
Nn7g35939 Nelumbo nucifera HOM05D007083 ORTHO05D008801 4.0e-26 124.0 155 41.3
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 8.9e-26 122.9 193 39.4
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 8.9e-26 122.9 199 36.2
Glyma.11G123700 Glycine max HOM05D007083 ORTHO05D008801 8.9e-26 122.9 187 40.6
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 1.2e-25 122.5 173 43.4
SalBow3G3241 Salvia bowleyana HOM05D001193 ORTHO05D001016 9.8e-25 119.4 179 38.5
COL.COLO4_17774 Corchorus olitorius HOM05D007083 ORTHO05D008801 1.2e-22 112.5 165 40.0
ATR0598G052 Amborella trichopoda HOM05D007083 ORTHO05D008801 1.0e-21 109.4 166 33.7
RcHm_v2.0_Chr2g0124591 Rosa chinensis HOM05D007083 ORTHO05D008801 1.6e-19 102.1 59 79.7
HPP92_019625 Vanilla planifolia HOM05D007083 ORTHO05D008801 4.7e-19 100.5 167 38.3
Aqoxy7G03503 Aquilegia oxysepala HOM05D007083 ORTHO05D008801 3.2e-15 87.8 143 35.0
PSO384G4964 Papaver somniferum HOM05D007083 ORTHO05D008801 3.2e-15 87.8 214 31.8
PSO339G4029 Papaver somniferum HOM05D007083 ORTHO05D008801 3.5e-14 84.3 160 32.5
Migut.N01212 Erythranthe guttata HOM05D007083 ORTHO05D008801 7.3e-12 76.6 206 29.6
TPR.G10240 Trifolium pratense HOM05D007083 ORTHO05D008801 2.2e-08 65.1 62 40.3
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 2.9e-08 64.7 189 33.3
RcHm_v2.0_Chr6g0266771 Rosa chinensis HOM05D007083 ORTHO05D008801 2.4e-07 61.6 31 90.3
RcHm_v2.0_Chr6g0260391 Rosa chinensis HOM05D007083 ORTHO05D008801 5.4e-07 60.5 31 87.1
RcHm_v2.0_Chr6g0260661 Rosa chinensis HOM05D007083 ORTHO05D008801 5.4e-07 60.5 31 87.1
RcHm_v2.0_Chr6g0260531 Rosa chinensis HOM05D007083 ORTHO05D008801 1.2e-06 59.3 31 83.9
Haze_02434 Corylus avellana HOM05D007675 ORTHO05D009699 2.1e-06 58.5 192 30.7
RcHm_v2.0_Chr6g0260161 Rosa chinensis HOM05D007083 ORTHO05D008801 2.1e-06 58.5 31 83.9
Sopen02g005740 Solanum pennellii HOM05D007496 ORTHO05D009479 2.1e-06 58.5 140 35.7
vmacro17185 Vaccinium macrocarpon HOM05D007496 ORTHO05D009479 2.7e-06 58.2 138 34.1
Lsat_1_v5_gn_3_27601 Lactuca sativa HOM05D007496 ORTHO05D009479 4.6e-06 57.4 164 28.7
Cfa004966 Carpinus fangiana HOM05D007675 ORTHO05D009699 6.0e-06 57.0 190 30.5
Dinv23568 Davidia involucrata HOM05D007675 ORTHO05D009699 6.0e-06 57.0 203 28.1
PGSC0003DMG401017024 Solanum tuberosum HOM05D007496 ORTHO05D009479 6.0e-06 57.0 140 35.0
PGSC0003DMG402017024 Solanum tuberosum HOM05D007496 ORTHO05D009479 6.0e-06 57.0 140 35.0
Solyc02g021270.3 Solanum lycopersicum HOM05D007496 ORTHO05D009479 7.8e-06 56.6 140 35.0


User provided reference genes

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