Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0939 Fragaria x ananassa HOM05D000372 ORTHO05D002769 3.3e-53 211.5 109 100.0
FAN20G0028 Fragaria x ananassa HOM05D000372 ORTHO05D002769 4.3e-16 88.2 68 70.6
FAN24G0506 Fragaria x ananassa HOM05D000372 ORTHO05D002769 1.2e-15 86.7 68 70.6
RcHm_v2.0_Chr6g0250611 Rosa chinensis HOM05D000372 ORTHO05D001610 1.6e-15 86.3 68 67.6
RcHm_v2.0_Chr6g0250921 Rosa chinensis HOM05D000372 ORTHO05D002769 2.8e-15 85.5 69 66.7
RcHm_v2.0_Chr6g0250631 Rosa chinensis HOM05D000372 ORTHO05D002769 1.8e-14 82.8 60 70.0
FAN04G3106 Fragaria x ananassa HOM05D000372 ORTHO05D002769 1.3e-12 76.6 75 54.7
FAN13G1536 Fragaria x ananassa HOM05D000372 ORTHO05D002769 2.2e-12 75.9 75 54.7
Prupe.8G031600 Prunus persica HOM05D000372 ORTHO05D002769 2.2e-12 75.9 72 56.9
FvH4_2g00520 Fragaria vesca HOM05D000372 ORTHO05D002769 2.9e-12 75.5 55 72.7
FvH4_5g39340 Fragaria vesca HOM05D000372 ORTHO05D002769 2.9e-12 75.5 75 54.7
FvH4_3g25600 Fragaria vesca HOM05D000372 ORTHO05D002769 3.7e-12 75.1 75 53.3
FAN08G2841 Fragaria x ananassa HOM05D000372 ORTHO05D002769 4.9e-12 74.7 66 60.6
FAN18G3081 Fragaria x ananassa HOM05D000372 ORTHO05D002769 4.9e-12 74.7 66 60.6
RcHm_v2.0_Chr7g0241621 Rosa chinensis HOM05D000372 ORTHO05D002769 1.1e-11 73.6 75 54.7
MD11G1315000 Malus domestica HOM05D000372 ORTHO05D002769 1.2e-10 70.1 62 58.1
Manes.09G059183 Manihot esculenta HOM05D000372 ORTHO05D002769 2.0e-10 69.3 91 42.9
Manes.09G059305 Manihot esculenta HOM05D000372 ORTHO05D002769 2.7e-10 68.9 74 48.6
ClCG02G014910 Citrullus lanatus HOM05D000372 ORTHO05D002769 4.6e-10 68.2 67 52.2
Sed0019709 Sechium edule HOM05D000372 ORTHO05D002769 4.6e-10 68.2 67 53.7
PGR119G2264 Punica granatum HOM05D000372 ORTHO05D002769 1.0e-09 67.0 67 53.7
Lj1C17G12 Lonicera japonica HOM05D000372 ORTHO05D002769 1.3e-09 66.6 67 55.2
Sc05g0000470 Simmondsia chinensis HOM05D000372 ORTHO05D002769 1.3e-09 66.6 69 50.7
CsaV3_2G007100 Cucumis sativus L. HOM05D000372 ORTHO05D002769 1.7e-09 66.2 67 50.7
TAR365G1263 Trochodendron aralioides HOM05D000372 ORTHO05D002769 3.0e-09 65.5 64 54.7
Dinv10090 Davidia involucrata HOM05D000372 ORTHO05D001610 3.9e-09 65.1 64 56.2
Lj1C27T6 Lonicera japonica HOM05D000372 ORTHO05D002769 3.9e-09 65.1 67 53.7
TAR375G0751 Trochodendron aralioides HOM05D000372 ORTHO05D002769 5.0e-09 64.7 64 53.1
Cc02_g27630 Coffea canephora HOM05D000372 ORTHO05D002769 6.6e-09 64.3 65 53.8
vmacro02407 Vaccinium macrocarpon HOM05D000372 ORTHO05D002769 6.6e-09 64.3 64 53.1
Rhsim13G0005100 Rhododendron simsii HOM05D000372 ORTHO05D002769 8.6e-09 63.9 64 53.1
Lsat_1_v5_gn_1_115221 Lactuca sativa HOM05D000372 ORTHO05D002769 1.5e-08 63.2 64 48.4
Atru.chr2.155 Acer truncatum HOM05D000372 ORTHO05D002769 1.9e-08 62.8 62 54.8
Lsat_1_v5_gn_3_140881 Lactuca sativa HOM05D000372 ORTHO05D002769 1.9e-08 62.8 64 51.6
Hund02938 Selenicereus undatus HOM05D000372 ORTHO05D002769 1.9e-08 62.8 62 53.2
GSVIVG01028113001 Vitis vinifera HOM05D000372 ORTHO05D002769 1.9e-08 62.8 61 54.1
Lsat_1_v5_gn_9_2821 Lactuca sativa HOM05D000372 ORTHO05D002769 2.5e-08 62.4 67 46.3
Prupe.6G314200 Prunus persica HOM05D000372 ORTHO05D002769 4.3e-08 61.6 64 51.6
COL.COLO4_23239 Corchorus olitorius HOM05D000372 ORTHO05D002769 5.6e-08 61.2 64 51.6
Duzib177G0355 Durio zibethinus HOM05D000372 ORTHO05D002769 5.6e-08 61.2 67 50.7
QL02p088793 Quercus lobata HOM05D000372 ORTHO05D002769 5.6e-08 61.2 64 51.6
SalBow7G1647 Salvia bowleyana HOM05D000372 ORTHO05D002769 1.6e-07 59.7 68 44.1
SalBow7G4121 Salvia bowleyana HOM05D000372 ORTHO05D002769 1.6e-07 59.7 68 44.1
Ciclev10000316m.g Citrus clementina HOM05D000372 ORTHO05D002769 2.1e-07 59.3 69 44.9
Migut.D00626 Erythranthe guttata HOM05D000372 ORTHO05D002769 2.1e-07 59.3 68 47.1
Migut.L00245 Erythranthe guttata HOM05D000372 ORTHO05D002769 2.1e-07 59.3 68 47.1
Migut.L00821 Erythranthe guttata HOM05D000372 ORTHO05D002769 2.1e-07 59.3 68 47.1
MBI19_g07250_MAGBIO Magnolia biondii HOM05D000372 ORTHO05D002769 2.1e-07 59.3 64 51.6
Migut.L00234 Erythranthe guttata HOM05D000372 ORTHO05D002769 2.8e-07 58.9 68 47.1
Zm00001eb268260 Zea mays HOM05D000372 ORTHO05D002769 2.8e-07 58.9 70 42.9
Ciclev10023268m.g Citrus clementina HOM05D000372 ORTHO05D002769 3.6e-07 58.5 67 49.3
COL.COLO4_04147 Corchorus olitorius HOM05D000372 ORTHO05D002769 3.6e-07 58.5 64 50.0
ECA247G1051 Erigeron canadensis HOM05D000372 ORTHO05D002769 3.6e-07 58.5 64 50.0
Migut.K01504 Erythranthe guttata HOM05D000372 ORTHO05D002769 3.6e-07 58.5 68 47.1
Ah.11g049270 Amaranthus hybridus HOM05D000372 ORTHO05D002769 4.7e-07 58.2 69 47.8
Sabra14G0090100 Salix brachista HOM05D000372 ORTHO05D002769 4.7e-07 58.2 64 43.8
Haze_05034 Corylus avellana HOM05D000372 ORTHO05D002769 6.2e-07 57.8 65 50.8
MD04G1194300 Malus domestica HOM05D000372 ORTHO05D002769 6.2e-07 57.8 64 46.9
CSS0041824 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D002769 8.0e-07 57.4 66 50.0
CDE11G0630 Ceratophyllum demersum HOM05D000372 ORTHO05D002769 8.0e-07 57.4 64 48.4
PSO384G1568 Papaver somniferum HOM05D000372 ORTHO05D002769 8.0e-07 57.4 67 44.8
SalBow6G5268 Salvia bowleyana HOM05D000372 ORTHO05D002769 8.0e-07 57.4 68 42.6
SGA_v2.0_scaffold29G12315 Striga asiatica HOM05D000372 ORTHO05D002769 8.0e-07 57.4 64 46.9
TWI14G0109 Tripterygium wilfordii HOM05D000372 ORTHO05D002769 1.1e-06 57.0 69 46.4
Atru.chr5.1008 Acer truncatum HOM05D000372 ORTHO05D002769 1.4e-06 56.6 64 50.0
Duzib138G0051 Durio zibethinus HOM05D000372 ORTHO05D002769 1.4e-06 56.6 64 48.4
ECA238G2885 Erigeron canadensis HOM05D000372 ORTHO05D002769 1.4e-06 56.6 64 46.9
Glyma.03G219100 Glycine max HOM05D000372 ORTHO05D002769 1.4e-06 56.6 64 50.0
AUR62010752 Chenopodium quinoa HOM05D000372 ORTHO05D002769 1.8e-06 56.2 69 46.4
Gohir.A11G272700 Gossypium hirsutum HOM05D000372 ORTHO05D002769 1.8e-06 56.2 67 52.2
SEGI_05175 Sequoiadendron giganteum HOM05D000372 ORTHO05D002769 1.8e-06 56.2 61 50.8
EL10As5g23524 Beta vulgaris HOM05D000372 ORTHO05D002769 2.3e-06 55.8 63 47.6
Nn3g20181 Nelumbo nucifera HOM05D000372 ORTHO05D002769 2.3e-06 55.8 67 43.3
Potri.014G121500 Populus trichocarpa HOM05D000372 ORTHO05D002769 2.3e-06 55.8 64 43.8
Thecc.01G312600 Theobroma cacao HOM05D000372 ORTHO05D002769 2.3e-06 55.8 64 46.9
HanXRQChr10g0285291 Helianthus annuus HOM05D000372 ORTHO05D002769 3.1e-06 55.5 64 46.9
QL07p024505 Quercus lobata HOM05D000372 ORTHO05D002769 3.1e-06 55.5 64 46.9
Thecc.05G321700 Theobroma cacao HOM05D000372 ORTHO05D002769 3.1e-06 55.5 64 46.9
HPP92_019785 Vanilla planifolia HOM05D000372 ORTHO05D002769 3.1e-06 55.5 68 41.2
AT2G47430 Arabidopsis thaliana HOM05D000372 ORTHO05D002769 4.0e-06 55.1 56 57.1
Gohir.A12G125200 Gossypium hirsutum HOM05D000372 ORTHO05D002769 4.0e-06 55.1 64 50.0
HanXRQChr12g0374221 Helianthus annuus HOM05D000372 ORTHO05D002769 4.0e-06 55.1 67 46.3
Aqoxy2G01548 Aquilegia oxysepala HOM05D000372 ORTHO05D002769 5.2e-06 54.7 64 48.4
AL4G46990 Arabidopsis lyrata HOM05D000372 ORTHO05D002769 5.2e-06 54.7 56 55.4
AUR62024654 Chenopodium quinoa HOM05D000372 ORTHO05D002769 5.2e-06 54.7 68 44.1
DCAR_003315 Daucus carota HOM05D000372 ORTHO05D002769 5.2e-06 54.7 66 40.9
Oeu046902.1 Olea europaea HOM05D000372 ORTHO05D002769 5.2e-06 54.7 65 49.2
Potri.008G191100 Populus trichocarpa HOM05D000372 ORTHO05D002769 5.2e-06 54.7 64 42.2
RcHm_v2.0_Chr3g0456951 Rosa chinensis HOM05D000372 ORTHO05D002769 5.2e-06 54.7 67 40.3
Cpa.g.sc96.38 Carica papaya HOM05D000372 ORTHO05D002769 6.8e-06 54.3 54 51.9
Gorai.N025000 Gossypium raimondii HOM05D000372 ORTHO05D002769 6.8e-06 54.3 67 46.3
Lju926C11G5 Lonicera japonica HOM05D000372 ORTHO05D002769 6.8e-06 54.3 62 50.0
Oeu046610.1 Olea europaea HOM05D000372 ORTHO05D002769 6.8e-06 54.3 64 50.0
HPP92_019691 Vanilla planifolia HOM05D000372 ORTHO05D002769 6.8e-06 54.3 67 41.8
CANSAT78G1040 Cannabis sativa HOM05D000372 ORTHO05D002769 8.9e-06 53.9 65 49.2
AUR62024660 Chenopodium quinoa HOM05D000372 ORTHO05D002769 8.9e-06 53.9 69 44.9
Thhalv10027011m.g Eutrema salsugineum HOM05D000372 ORTHO05D002769 8.9e-06 53.9 69 46.4
Gohir.D12G128900 Gossypium hirsutum HOM05D000372 ORTHO05D002769 8.9e-06 53.9 64 48.4
Gorai.008G139900 Gossypium raimondii HOM05D000372 ORTHO05D002769 8.9e-06 53.9 64 48.4
SHI20309 Sapria himalayana HOM05D000372 ORTHO05D002769 8.9e-06 53.9 93 34.4
TAR375G0161 Trochodendron aralioides HOM05D000372 ORTHO05D002769 8.9e-06 53.9 62 45.2


User provided reference genes

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