Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 4.6e-211 737.6 376 100.0
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 3.3e-209 731.5 377 99.5
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.5e-204 715.3 378 97.4
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.2e-203 713.0 377 97.1
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 5.8e-198 694.1 377 95.2
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 1.3e-184 649.8 379 88.9
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 3.8e-149 531.9 390 73.8
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 1.3e-136 490.3 380 71.6
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 4.6e-126 455.3 383 68.4
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 3.9e-125 452.2 380 66.6
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 1.1e-124 450.7 383 68.1
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 1.5e-124 450.3 381 66.9
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 5.2e-122 441.8 384 64.8
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 1.6e-118 430.3 381 63.0
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.5e-116 423.7 381 61.2
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 1.9e-116 423.3 367 64.0
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 2.4e-111 406.4 373 64.6
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 7.8e-110 401.4 394 59.6
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 3.9e-109 399.1 378 60.1
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 5.1e-109 398.7 370 64.9
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 4.3e-108 395.6 380 60.3
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 1.8e-106 390.2 364 59.3
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 5.8e-105 385.2 380 57.4
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 2.2e-104 383.3 367 58.3
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.9e-103 380.2 380 57.1
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 2.7e-102 376.3 388 57.7
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.7e-101 373.6 375 57.6
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 3.0e-101 372.9 384 58.1
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.0e-101 372.9 373 56.0
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 6.6e-101 371.7 383 58.5
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 3.3e-100 369.4 392 57.7
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 3.3e-100 369.4 373 56.3
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 9.6e-100 367.9 384 58.1
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.1e-95 354.4 391 56.3
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.1e-95 354.4 391 56.3
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 7.9e-94 348.2 387 54.8
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 2.3e-93 346.7 398 53.3
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.0e-93 346.3 372 54.0
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 1.1e-90 337.8 389 55.5
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 2.6e-89 333.2 453 46.8
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 7.6e-89 331.6 346 56.4
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 1.0e-88 331.3 397 52.1
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 3.8e-88 329.3 379 54.4
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 5.5e-87 325.5 378 51.6
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 4.6e-86 322.4 368 53.3
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 6.7e-85 318.5 365 51.8
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 1.9e-84 317.0 392 50.5
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 2.5e-84 316.6 383 49.9
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 4.3e-84 315.8 378 49.2
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 9.6e-84 314.7 383 48.8
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.7e-83 312.8 368 52.2
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 4.8e-83 312.4 382 49.7
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 4.8e-83 312.4 376 48.7
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.1e-82 311.2 385 50.1
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 1.1e-82 311.2 383 50.1
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 1.4e-82 310.8 388 54.1
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 1.4e-82 310.8 385 50.1
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 1.5e-81 307.4 377 51.2
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 2.0e-81 307.0 383 48.6
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 5.9e-81 305.4 385 48.3
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 1.7e-80 303.9 381 52.8
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 2.9e-80 303.1 377 50.1
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 3.8e-80 302.8 373 48.5
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 3.8e-80 302.8 380 47.9
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 6.5e-80 302.0 375 49.9
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 3.2e-79 299.7 395 47.8
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 5.5e-79 298.9 386 47.9
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 5.5e-79 298.9 386 47.9
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 7.2e-79 298.5 380 47.4
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 1.2e-78 297.7 394 47.7
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 1.6e-78 297.4 386 47.9
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 2.1e-78 297.0 367 49.0
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 3.5e-78 296.2 434 46.3
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 7.9e-78 295.0 383 46.5
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 1.8e-77 293.9 381 51.2
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.0e-77 293.1 380 49.7
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 4.3e-76 289.3 377 49.9
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 5.7e-76 288.9 382 48.4
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 7.4e-76 288.5 386 48.4
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 3.7e-75 286.2 384 45.3
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 1.4e-74 284.3 374 48.1
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.0e-73 280.4 392 46.7
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 1.0e-72 278.1 348 50.3
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 1.7e-72 277.3 384 46.4
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 1.1e-71 274.6 425 44.9
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 9.4e-71 271.6 380 47.4
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 1.6e-70 270.8 384 44.5
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 4.6e-70 269.2 362 49.4
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 3.0e-69 266.5 348 47.4
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 2.5e-68 263.5 384 46.1
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 2.2e-67 260.4 362 48.6
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 8.2e-67 258.5 382 44.2
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 3.4e-65 253.1 401 41.9
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 4.5e-65 252.7 369 46.9
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 1.1e-63 248.1 375 45.6
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 3.6e-62 243.0 398 45.2
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 1.5e-60 237.7 271 52.4
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 9.1e-58 228.4 302 49.0
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 1.7e-56 224.2 385 43.4
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 2.9e-56 223.4 349 44.7
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 1.1e-55 221.5 195 62.6
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 3.6e-54 216.5 383 42.6
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 8.8e-53 211.8 373 38.9
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 2.0e-52 210.7 360 41.1
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 2.8e-51 206.8 387 40.3
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 3.7e-51 206.5 386 40.2
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 4.1e-50 203.0 311 47.9
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 1.3e-48 198.0 364 41.2
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 5.0e-48 196.1 272 51.1
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 2.1e-46 190.7 360 38.3
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 3.6e-46 189.9 297 44.4
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 4.7e-46 189.5 184 55.4
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 8.8e-45 185.3 204 52.9
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 2.6e-44 183.7 342 40.9
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 3.7e-43 179.9 188 54.8
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 1.8e-42 177.6 363 36.1
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 4.5e-41 172.9 202 48.0
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 1.3e-40 171.4 355 34.9
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 6.5e-40 169.1 126 58.7
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 5.5e-39 166.0 371 37.5
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 2.0e-36 157.5 368 34.2
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 2.6e-36 157.1 253 44.3
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 1.4e-34 151.4 118 68.6
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 3.6e-30 136.7 362 32.3
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 8.0e-30 135.6 370 32.7
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 3.4e-28 130.2 112 64.3
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 2.3e-24 117.5 187 39.0
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 1.8e-21 107.8 132 54.5
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.6e-17 94.7 356 30.9
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 2.7e-17 94.0 171 37.4
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.7e-16 91.3 156 34.6
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 3.0e-16 90.5 163 37.4
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 5.0e-16 89.7 163 36.8
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 8.6e-16 89.0 160 32.5
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.1e-15 88.6 165 37.0
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 6.2e-14 82.8 91 46.2
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 8.1e-14 82.4 354 26.3
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 4.0e-13 80.1 166 30.1
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 6.0e-09 66.2 162 30.2
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 6.0e-09 66.2 162 30.2
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 6.0e-09 66.2 162 30.2
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 6.0e-09 66.2 162 30.2
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 6.0e-09 66.2 162 30.2
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 7.8e-09 65.9 86 47.7
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 1.3e-08 65.1 162 29.6
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 1.3e-08 65.1 162 29.0
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 2.3e-08 64.3 162 29.6
MBI11_g00913_MAGBIO Magnolia biondii HOM05D001735 ORTHO05D001640 7.3e-07 59.3 191 28.3
Aqoxy5G03520 Aquilegia oxysepala HOM05D001735 ORTHO05D001640 2.1e-06 57.8 161 31.1
TAR374G1031 Trochodendron aralioides HOM05D001735 ORTHO05D001640 2.1e-06 57.8 188 25.5
Nn4g22410 Nelumbo nucifera HOM05D001735 ORTHO05D001640 3.6e-06 57.0 248 23.8


User provided reference genes

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