Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.2e-180 636.3 309 100.0
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 1.4e-176 622.9 333 92.8
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.6e-175 618.6 335 91.6
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.8e-171 604.7 325 92.0
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 1.5e-162 576.2 363 81.5
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 2.0e-151 539.3 352 77.3
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 1.3e-142 510.0 362 72.9
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 1.1e-136 490.3 335 73.7
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 2.6e-135 485.7 340 71.5
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 3.4e-135 485.3 335 72.5
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 6.4e-134 481.1 340 71.2
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 2.4e-133 479.2 352 68.8
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 2.4e-133 479.2 339 69.9
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.4e-133 479.2 357 68.3
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 1.6e-132 476.5 357 68.6
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.6e-132 476.5 358 68.2
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 2.1e-132 476.1 337 71.8
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 2.1e-132 476.1 365 69.0
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 2.1e-132 476.1 360 68.6
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 2.7e-132 475.7 337 70.0
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 6.0e-132 474.6 335 71.0
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 1.3e-131 473.4 337 69.7
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 2.3e-131 472.6 330 72.1
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 5.1e-131 471.5 338 70.1
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 5.1e-131 471.5 350 68.6
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.1e-130 470.3 357 66.9
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.9e-130 469.5 349 68.5
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 1.9e-130 469.5 344 69.5
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 2.5e-130 469.2 353 68.3
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 3.3e-130 468.8 353 67.1
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 5.6e-130 468.0 351 68.1
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 6.2e-129 464.5 350 68.9
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 3.1e-128 462.2 316 71.5
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 1.2e-127 460.3 332 69.9
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 1.2e-127 460.3 349 67.9
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 1.5e-127 459.9 332 69.6
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 3.4e-127 458.8 372 65.1
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 3.4e-127 458.8 376 64.9
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 4.4e-127 458.4 333 68.8
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 1.7e-126 456.4 344 68.3
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.7e-126 456.4 349 66.5
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.7e-126 456.4 349 66.5
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 2.9e-126 455.7 341 69.5
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 6.4e-126 454.5 372 64.0
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 1.1e-125 453.8 354 65.8
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 5.4e-125 451.4 342 67.0
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 9.3e-125 450.7 335 68.1
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 9.3e-125 450.7 348 66.4
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 2.1e-124 449.5 348 65.8
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 7.8e-124 447.6 341 66.0
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.3e-123 446.8 328 69.8
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 1.7e-123 446.4 334 68.6
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 5.1e-123 444.9 348 64.7
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 6.6e-123 444.5 346 65.3
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 8.7e-123 444.1 354 65.0
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.1e-122 443.7 350 64.6
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 1.5e-122 443.4 354 65.0
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.5e-122 442.6 345 65.2
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.3e-122 442.2 345 65.5
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.3e-122 442.2 345 65.2
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 4.3e-122 441.8 342 65.2
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 4.3e-122 441.8 348 65.2
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 1.3e-121 440.3 347 65.4
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.1e-121 439.5 348 64.1
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 2.1e-121 439.5 350 64.0
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 2.1e-121 439.5 347 65.4
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 2.8e-121 439.1 355 63.7
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 3.6e-121 438.7 344 64.8
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 8.1e-121 437.6 345 65.2
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.1e-120 437.2 374 60.7
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 1.4e-120 436.8 337 66.2
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 4.0e-120 435.3 361 63.2
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 5.3e-120 434.9 347 65.1
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.9e-120 434.5 340 65.3
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.0e-119 433.0 345 64.6
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 3.4e-119 432.2 342 65.8
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.4e-119 431.8 340 64.7
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 5.8e-119 431.4 347 64.0
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 1.4e-117 426.8 351 64.1
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 2.4e-117 426.0 345 64.9
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 3.2e-117 425.6 340 64.4
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 4.2e-117 425.2 347 63.7
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 4.2e-117 425.2 346 64.5
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 9.3e-117 424.1 351 64.1
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 2.7e-116 422.5 408 56.1
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 6.0e-116 421.4 346 64.7
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 7.9e-116 421.0 341 65.4
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 1.7e-115 419.9 345 64.9
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 5.1e-115 418.3 351 64.1
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 6.6e-115 417.9 346 63.9
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 8.7e-115 417.5 346 65.0
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 4.3e-114 415.2 341 64.5
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 7.3e-114 414.5 346 64.5
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 9.6e-114 414.1 341 64.8
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 9.6e-114 414.1 341 64.8
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 2.1e-113 412.9 333 64.3
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 4.8e-113 411.8 346 63.9
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 6.2e-113 411.4 346 64.2
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 1.1e-112 410.6 333 64.0
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 2.0e-111 406.4 353 62.0
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 4.5e-111 405.2 340 64.4
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 4.5e-111 405.2 346 62.7
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 5.8e-111 404.8 340 64.1
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 4.9e-110 401.7 340 63.2
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.9e-109 399.8 323 62.8
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 1.9e-109 399.8 355 57.7
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 4.2e-109 398.7 375 56.3
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 2.1e-108 396.4 341 61.0
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 2.1e-108 396.4 333 61.9
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 1.3e-107 393.7 333 64.9
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 1.9e-106 389.8 355 58.3
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 2.5e-106 389.4 334 62.9
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 3.3e-106 389.0 327 63.9
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 7.4e-106 387.9 372 56.2
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 9.6e-106 387.5 346 61.6
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 2.8e-105 386.0 332 60.8
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 8.1e-105 384.4 333 62.5
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.4e-104 382.9 200 97.0
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.0e-102 377.5 305 63.6
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 1.9e-101 373.2 325 60.9
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 5.5e-101 371.7 366 54.9
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 5.1e-99 365.2 316 61.7
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 6.7e-99 364.8 320 63.4
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.1e-98 364.0 354 56.2
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 5.7e-98 361.7 514 42.8
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.1e-96 357.5 421 49.4
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 1.4e-96 357.1 353 55.2
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 2.9e-94 349.4 322 55.6
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 4.2e-93 345.5 403 49.1
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 6.1e-92 341.7 330 53.6
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 6.3e-89 331.6 361 52.6
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 8.2e-89 331.3 363 50.4
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.3e-86 323.9 308 58.1
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 8.5e-86 321.2 303 59.4
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 2.0e-74 283.5 343 47.5
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 3.3e-74 282.7 363 46.3
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 7.2e-69 265.0 270 55.2
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 7.2e-69 265.0 392 42.9
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 4.0e-67 259.2 230 59.1
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 5.5e-61 238.8 225 64.4
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.7e-60 236.5 202 64.4
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 8.0e-60 235.0 335 40.3
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 5.2e-59 232.3 374 39.6
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 5.2e-59 232.3 205 61.5
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 5.2e-59 232.3 205 61.5
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 4.8e-57 225.7 370 40.8
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 1.1e-56 224.6 161 68.9
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.1e-53 214.5 136 78.7
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 1.8e-51 207.2 158 69.0
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 5.2e-51 205.7 155 67.1
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 1.2e-50 204.5 395 34.7
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 7.7e-47 191.8 160 54.4
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 8.9e-43 178.3 125 64.0
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.5e-31 139.8 120 58.3
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 3.5e-31 139.8 358 30.4
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.4e-27 127.9 332 31.6
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 5.2e-27 125.9 72 75.0
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.3e-25 121.3 64 82.8
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 8.4e-17 92.0 78 61.5
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 2.4e-16 90.5 63 66.7
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.2e-07 61.6 33 72.7


User provided reference genes

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