Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0865 Fragaria x ananassa HOM05D012992 ORTHO05D020705 3.3e-98 361.7 182 100.0
FAN27G2024 Fragaria x ananassa HOM05D012992 ORTHO05D020705 5.5e-93 344.4 182 94.5
FAN15G2801 Fragaria x ananassa HOM05D012992 ORTHO05D020705 2.2e-78 295.8 149 98.7
FAN20G2539 Fragaria x ananassa HOM05D012992 ORTHO05D020705 1.7e-62 243.0 183 72.7
FvH4_2g24200 Fragaria vesca HOM05D012992 ORTHO05D001207 7.3e-53 211.1 149 75.2
FAN24G0490 Fragaria x ananassa HOM05D012992 ORTHO05D001207 7.3e-53 211.1 149 75.2
FAN20G0181 Fragaria x ananassa HOM05D012992 ORTHO05D001207 4.0e-51 205.3 149 73.8
FAN07G0948 Fragaria x ananassa HOM05D001578 ORTHO05D001207 2.1e-44 183.0 150 66.0
FAN15G3114 Fragaria x ananassa HOM05D012992 ORTHO05D001207 8.9e-35 151.0 145 60.0
FAN27G0987 Fragaria x ananassa HOM05D012992 ORTHO05D020705 9.2e-32 141.0 127 63.8
FAN24G0283 Fragaria x ananassa HOM05D012992 ORTHO05D045488 2.7e-31 139.4 142 57.0
FAN24G1812 Fragaria x ananassa HOM05D012992 ORTHO05D020705 6.6e-30 134.8 120 66.7
FvH4_2g24190 Fragaria vesca HOM05D012992 ORTHO05D045488 1.5e-26 123.6 109 59.6
RcHm_v2.0_Chr3g0482891 Rosa chinensis HOM05D001578 ORTHO05D001207 7.6e-26 121.3 182 40.7
FvH4_2g24210 Fragaria vesca HOM05D012992 ORTHO05D020705 4.6e-23 112.1 108 63.0
MD13G1150200 Malus domestica HOM05D001578 ORTHO05D001207 1.8e-19 100.1 171 38.0
Prupe.3G146800 Prunus persica HOM05D001578 ORTHO05D001207 1.5e-18 97.1 164 40.2
Prupe.1G114500 Prunus persica HOM05D001578 ORTHO05D001207 4.9e-17 92.0 178 36.5
MD13G1150400 Malus domestica HOM05D001578 ORTHO05D001207 9.3e-16 87.8 177 35.0
MD16G1150100 Malus domestica HOM05D001578 ORTHO05D001207 9.3e-16 87.8 166 38.0
Prupe.5G112600 Prunus persica HOM05D001578 ORTHO05D001207 2.7e-15 86.3 173 37.0
Glyma.20G029700 Glycine max HOM05D001578 ORTHO05D001207 7.9e-15 84.7 166 34.3
FvH4_4g20440 Fragaria vesca HOM05D001578 ORTHO05D001207 1.3e-14 84.0 182 33.5
FAN12G2021 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.3e-14 84.0 182 33.5
Glyma.20G028900 Glycine max HOM05D001578 ORTHO05D001207 1.8e-14 83.6 166 33.1
FAN07G2152 Fragaria x ananassa HOM05D001578 ORTHO05D001207 2.3e-14 83.2 182 33.5
RcHm_v2.0_Chr4g0426481 Rosa chinensis HOM05D001578 ORTHO05D001207 2.3e-14 83.2 174 38.5
Lalb_Chr07g0181931 Lupinus albus HOM05D001578 ORTHO05D001207 3.9e-14 82.4 184 32.6
FvH4_1g05890 Fragaria vesca HOM05D001578 ORTHO05D001207 5.1e-14 82.0 163 38.7
MD13G1150300 Malus domestica HOM05D001578 ORTHO05D001207 5.1e-14 82.0 158 36.1
FAN02G2223 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.1e-13 80.9 171 31.6
RcHm_v2.0_Chr2g0144321 Rosa chinensis HOM05D001578 ORTHO05D001207 5.6e-13 78.6 158 36.1
RcHm_v2.0_Chr7g0200071 Rosa chinensis HOM05D001578 ORTHO05D001207 5.6e-13 78.6 158 36.1
MD13G1149700 Malus domestica HOM05D001578 ORTHO05D001207 7.4e-13 78.2 183 31.7
Manes.15G002100 Manihot esculenta HOM05D001578 ORTHO05D001207 7.4e-13 78.2 173 36.4
TPR.G25429 Trifolium pratense HOM05D001578 ORTHO05D001207 7.4e-13 78.2 184 33.2
FvH4_4g25210 Fragaria vesca HOM05D001578 ORTHO05D001207 9.6e-13 77.8 169 36.1
FAN12G0064 Fragaria x ananassa HOM05D000713 ORTHO05D000547 9.6e-13 77.8 176 34.1
Glyma.17G036400 Glycine max HOM05D001578 ORTHO05D001207 9.6e-13 77.8 178 33.1
RcHm_v2.0_Chr2g0143761 Rosa chinensis HOM05D001578 ORTHO05D001207 9.6e-13 77.8 158 36.1
CiPaw.01G135900 Carya illinoinensis HOM05D001578 ORTHO05D001207 1.3e-12 77.4 173 33.5
Glyma.07G237300 Glycine max HOM05D001578 ORTHO05D001207 1.3e-12 77.4 172 33.1
Glyma.20G029500 Glycine max HOM05D001578 ORTHO05D001207 1.3e-12 77.4 166 31.9
Lalb_Chr12g0200771 Lupinus albus HOM05D001578 ORTHO05D001207 1.3e-12 77.4 176 33.0
FAN17G3073 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.6e-12 77.0 169 36.1
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.6e-12 77.0 178 34.3
Glyma.20G029200 Glycine max HOM05D001578 ORTHO05D001207 1.6e-12 77.0 166 31.9
MD16G1150000 Malus domestica HOM05D001578 ORTHO05D001207 1.6e-12 77.0 110 41.8
Glyma.20G028700 Glycine max HOM05D001578 ORTHO05D001207 2.1e-12 76.6 155 33.5
Ca_21425_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 2.8e-12 76.3 149 31.5
FAN22G2269 Fragaria x ananassa HOM05D001578 ORTHO05D001207 3.6e-12 75.9 169 36.1
CiPaw.01G135600 Carya illinoinensis HOM05D001578 ORTHO05D001207 4.8e-12 75.5 177 34.5
Ca_21409_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 4.8e-12 75.5 141 32.6
Ca_21424_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 4.8e-12 75.5 141 32.6
Haze_01334 Corylus avellana HOM05D001578 ORTHO05D001207 8.1e-12 74.7 172 34.3
TPR.G25407 Trifolium pratense HOM05D001578 ORTHO05D001207 8.1e-12 74.7 172 34.9
VMungo1215G0431 Vigna mungo HOM05D001578 ORTHO05D001207 8.1e-12 74.7 176 32.4
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 1.1e-11 74.3 185 33.5
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 1.1e-11 74.3 185 33.5
Haze_01339 Corylus avellana HOM05D001578 ORTHO05D001207 1.1e-11 74.3 172 34.3
Glyma.17G036300 Glycine max HOM05D001578 ORTHO05D001207 1.1e-11 74.3 149 35.6
QL06p012837 Quercus lobata HOM05D001578 ORTHO05D001207 1.1e-11 74.3 178 32.0
QL06p012845 Quercus lobata HOM05D001578 ORTHO05D001207 1.1e-11 74.3 178 32.6
Ca_21410_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 1.4e-11 73.9 189 32.8
Medtr4g122890 Medicago truncatula HOM05D001578 ORTHO05D001207 1.4e-11 73.9 173 33.5
FAN18G0021 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.8e-11 73.6 174 35.6
CiPaw.01G135800 Carya illinoinensis HOM05D001578 ORTHO05D001207 2.4e-11 73.2 172 34.9
CiPaw.01G136000 Carya illinoinensis HOM05D001578 ORTHO05D001207 2.4e-11 73.2 184 32.6
Phvul.003G117300 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 3.1e-11 72.8 182 32.4
Cfa015284 Carpinus fangiana HOM05D001578 ORTHO05D001207 4.0e-11 72.4 185 34.6
Duzib177G0524 Durio zibethinus HOM05D001578 ORTHO05D001207 5.3e-11 72.0 147 34.7
FvH4_5g04330 Fragaria vesca HOM05D001578 ORTHO05D001207 6.9e-11 71.6 173 35.8
Migut.N00031 Erythranthe guttata HOM05D001578 ORTHO05D001207 9.0e-11 71.2 169 35.5
TPR.G25397 Trifolium pratense HOM05D001578 ORTHO05D001207 9.0e-11 71.2 150 34.0
TPR.G25401 Trifolium pratense HOM05D001578 ORTHO05D001207 9.0e-11 71.2 187 31.6
Prupe.1G113800 Prunus persica HOM05D001578 ORTHO05D001207 1.2e-10 70.9 185 30.8
FAN07G1428 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.5e-10 70.5 179 29.6
FAN07G2406 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.5e-10 70.5 172 29.7
Lalb_Chr12g0200781 Lupinus albus HOM05D001578 ORTHO05D001207 2.0e-10 70.1 153 33.3
Medtr4g122800 Medicago truncatula HOM05D001578 ORTHO05D001207 2.6e-10 69.7 182 31.3
RcHm_v2.0_Chr4g0425961 Rosa chinensis HOM05D001578 ORTHO05D001207 2.6e-10 69.7 179 31.8
FvH4_4g20480 Fragaria vesca HOM05D001578 ORTHO05D001207 3.4e-10 69.3 179 30.2
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 3.4e-10 69.3 183 30.6
Lalb_Chr07g0181941 Lupinus albus HOM05D001578 ORTHO05D001207 4.5e-10 68.9 178 32.0
Medtr4g122750 Medicago truncatula HOM05D001578 ORTHO05D001207 5.8e-10 68.6 183 33.3
QL06p012826 Quercus lobata HOM05D001578 ORTHO05D001207 7.6e-10 68.2 174 33.9
FvH4_6g33790 Fragaria vesca HOM05D001578 ORTHO05D001207 9.9e-10 67.8 145 31.0
Phvul.003G117400 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 9.9e-10 67.8 162 32.7
FAN12G0910 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.3e-09 67.4 179 29.6
Glyma.20G029000 Glycine max HOM05D001578 ORTHO05D001207 1.3e-09 67.4 150 31.3
Gohir.A05G275500 Gossypium hirsutum HOM05D001578 ORTHO05D001207 2.2e-09 66.6 171 29.8
Phvul.003G117200 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 2.2e-09 66.6 186 32.3
TWI75G0074 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 2.2e-09 66.6 184 29.3
FAN12G2012 Fragaria x ananassa HOM05D001578 ORTHO05D001207 2.9e-09 66.2 178 34.3
Gohir.D05G277600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 2.9e-09 66.2 149 32.2
Gorai.009G290600 Gossypium raimondii HOM05D001578 ORTHO05D001207 2.9e-09 66.2 149 32.2
Psat0s2823g0080 Pisum sativum HOM05D001578 ORTHO05D001207 2.9e-09 66.2 189 30.7
FvH4_4g20510 Fragaria vesca HOM05D001578 ORTHO05D001207 3.8e-09 65.9 188 28.7
Lj4g0009388 Lotus japonicus HOM05D001578 ORTHO05D001207 3.8e-09 65.9 180 29.4
Lj1g0016642 Lotus japonicus HOM05D001578 ORTHO05D001207 6.4e-09 65.1 186 30.6
Manes.03G207100 Manihot esculenta HOM05D001578 ORTHO05D001207 6.4e-09 65.1 167 34.1
Lsat_1_v5_gn_6_301 Lactuca sativa HOM05D001578 ORTHO05D001207 1.1e-08 64.3 169 30.8
Migut.N00030 Erythranthe guttata HOM05D001578 ORTHO05D001207 1.4e-08 63.9 144 31.2
RcHm_v2.0_Chr4g0432401 Rosa chinensis HOM05D001578 ORTHO05D001207 1.4e-08 63.9 176 32.4
CANSAT78G0727 Cannabis sativa HOM05D001578 ORTHO05D001207 1.9e-08 63.5 182 29.1
Manes.03G207000 Manihot esculenta HOM05D001578 ORTHO05D001207 1.9e-08 63.5 179 30.7
MBI09_g01820_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 2.4e-08 63.2 180 31.1
RcHm_v2.0_Chr4g0432391 Rosa chinensis HOM05D001578 ORTHO05D001207 2.4e-08 63.2 164 32.3
Dinv44262 Davidia involucrata HOM05D001578 ORTHO05D001207 5.5e-08 62.0 161 31.1
MBI09_g40718_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 5.5e-08 62.0 172 32.0
MD16G1150200 Malus domestica HOM05D001578 ORTHO05D001207 5.5e-08 62.0 181 29.8
THA.LOC104820316 Tarenaya hassleriana HOM05D001578 ORTHO05D001207 5.5e-08 62.0 153 32.0
CARHR088540 Cardamine hirsuta HOM05D001578 ORTHO05D001207 2.1e-07 60.1 147 29.3
RcHm_v2.0_Chr4g0425861 Rosa chinensis HOM05D001578 ORTHO05D001207 2.1e-07 60.1 144 33.3
Ciclev10006032m.g Citrus clementina HOM05D001578 ORTHO05D001207 2.7e-07 59.7 168 28.0
MBI09_g02146_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 2.7e-07 59.7 169 30.2
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 2.7e-07 59.7 147 32.7
Phvul.003G117100 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 3.5e-07 59.3 160 31.9
CAN.G305.59 Capsicum annuum HOM05D001578 ORTHO05D001207 4.6e-07 58.9 147 28.6
MD13G1149800 Malus domestica HOM05D001578 ORTHO05D001207 4.6e-07 58.9 164 29.3
Lalb_Chr20g0117771 Lupinus albus HOM05D001578 ORTHO05D001207 7.9e-07 58.2 178 28.7
Psat0s4829g0040 Pisum sativum HOM05D001578 ORTHO05D001207 7.9e-07 58.2 175 30.9
MSTRG.16314 Avicennia marina HOM05D001578 ORTHO05D001207 1.0e-06 57.8 166 30.7
Carub.0003s1688 Capsella rubella HOM05D001578 ORTHO05D001207 1.0e-06 57.8 154 29.9
MD03G1249700 Malus domestica HOM05D001578 ORTHO05D001207 1.0e-06 57.8 144 30.6
Psat0s740g0160 Pisum sativum HOM05D001578 ORTHO05D001207 1.0e-06 57.8 184 30.4
HanXRQChr13g0395221 Helianthus annuus HOM05D001578 ORTHO05D001207 1.3e-06 57.4 177 27.7
Peaxi162Scf01160g00142 Petunia axillaris HOM05D001578 ORTHO05D001207 1.3e-06 57.4 151 26.5
Duzib151G0695 Durio zibethinus HOM05D001578 ORTHO05D001207 1.8e-06 57.0 175 29.1
Lsat_1_v5_gn_7_59300 Lactuca sativa HOM05D001578 ORTHO05D001207 1.8e-06 57.0 168 30.4
Lj6g0013229 Lotus japonicus HOM05D001578 ORTHO05D001207 1.8e-06 57.0 171 28.7
Potri.009G083500 Populus trichocarpa HOM05D001578 ORTHO05D001207 1.8e-06 57.0 184 29.9
Thhalv10011825m.g Eutrema salsugineum HOM05D001578 ORTHO05D001207 2.3e-06 56.6 157 28.0
MD03G1250000 Malus domestica HOM05D001578 ORTHO05D001207 2.3e-06 56.6 144 29.2
Medtr4g122760 Medicago truncatula HOM05D001578 ORTHO05D001207 2.3e-06 56.6 184 29.3
Nitab4.5_0000651g0280 Nicotiana tabacum HOM05D001578 ORTHO05D001207 2.3e-06 56.6 151 28.5
Lsat_1_v5_gn_7_59420 Lactuca sativa HOM05D001578 ORTHO05D001207 3.0e-06 56.2 184 29.9
Lj4g0019348 Lotus japonicus HOM05D001578 ORTHO05D001207 3.0e-06 56.2 179 27.9
VMungo1215G1199 Vigna mungo HOM05D001578 ORTHO05D001207 3.0e-06 56.2 160 31.2
CAN.G1359.1 Capsicum annuum HOM05D001578 ORTHO05D001207 3.9e-06 55.8 147 26.5
ECA233G5780 Erigeron canadensis HOM05D001578 ORTHO05D001207 3.9e-06 55.8 155 29.0
Lsat_1_v5_gn_7_59360 Lactuca sativa HOM05D001578 ORTHO05D001207 3.9e-06 55.8 168 30.4
Psat0s2818g0040 Pisum sativum HOM05D001578 ORTHO05D001207 3.9e-06 55.8 157 29.9
BcaC08g42990 Brassica carinata HOM05D001578 ORTHO05D001207 5.1e-06 55.5 153 28.8
C06p02320 Brassica napus HOM05D001578 ORTHO05D001207 5.1e-06 55.5 153 28.8
BolC6t35358H Brassica oleracea HOM05D001578 ORTHO05D001207 5.1e-06 55.5 153 28.8
PGR004G2339 Punica granatum HOM05D001578 ORTHO05D001207 6.7e-06 55.1 177 28.2
Psat4g021360 Pisum sativum HOM05D001578 ORTHO05D001207 8.7e-06 54.7 176 31.2


User provided reference genes

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