Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0841 Fragaria x ananassa HOM05D008430 ORTHO05D010682 5.5e-262 907.1 467 100.0
FvH4_2g21281 Fragaria vesca HOM05D008430 ORTHO05D010682 2.8e-210 735.3 467 85.0
FAN06G0233 Fragaria x ananassa HOM05D008430 ORTHO05D010682 5.4e-209 731.1 486 80.5
FAN15G0005 Fragaria x ananassa HOM05D008430 ORTHO05D010682 9.1e-209 730.3 486 80.9
FAN06G0355 Fragaria x ananassa HOM05D008430 ORTHO05D010682 2.4e-201 705.7 467 80.3
FvH4_7g16371 Fragaria vesca HOM05D008430 ORTHO05D010682 9.2e-177 624.0 487 71.7
FvH4_6g03011 Fragaria vesca HOM05D008430 ORTHO05D010682 3.3e-174 615.5 484 71.7
FAN21G2965 Fragaria x ananassa HOM05D008430 ORTHO05D010682 1.9e-142 510.0 385 74.5
FAN06G3513 Fragaria x ananassa HOM05D008430 ORTHO05D010682 5.5e-129 465.3 366 70.8
FAN06G4766 Fragaria x ananassa HOM05D008430 ORTHO05D010682 2.7e-128 463.0 367 71.1
FvH4_1g09850 Fragaria vesca HOM05D008430 ORTHO05D010682 1.1e-124 451.1 349 73.4
FAN14G0503 Fragaria x ananassa HOM05D008430 ORTHO05D010682 1.3e-114 417.5 270 83.3
FAN25G0164 Fragaria x ananassa HOM05D008430 ORTHO05D010682 6.5e-106 388.7 262 80.5
FAN07G2812 Fragaria x ananassa HOM05D008430 ORTHO05D010682 3.2e-105 386.3 340 65.3
FAN28G0990 Fragaria x ananassa HOM05D008430 ORTHO05D010682 1.9e-97 360.5 261 75.5
FvH4_3g29932 Fragaria vesca HOM05D008430 ORTHO05D010682 3.2e-97 359.8 419 51.1
FAN28G2514 Fragaria x ananassa HOM05D008430 ORTHO05D010682 1.8e-95 354.0 260 75.0
FAN21G1308 Fragaria x ananassa HOM05D008430 ORTHO05D010682 1.0e-90 338.2 417 47.5
FAN05G0822 Fragaria x ananassa HOM05D008430 ORTHO05D010682 1.5e-89 334.3 270 69.3
FAN19G2189 Fragaria x ananassa HOM05D008430 ORTHO05D010682 3.3e-81 306.6 230 74.3
FAN14G5285 Fragaria x ananassa HOM05D008430 ORTHO05D010682 2.9e-77 293.5 186 82.3
FAN09G2721 Fragaria x ananassa HOM05D008430 ORTHO05D010682 2.8e-72 276.9 359 52.9
FAN02G1662 Fragaria x ananassa HOM05D008430 ORTHO05D010682 5.6e-65 252.7 156 82.7
FAN16G1360 Fragaria x ananassa HOM05D008430 ORTHO05D010682 8.1e-56 222.2 160 75.0
FvH4_4g12651 Fragaria vesca HOM05D008430 ORTHO05D010682 2.9e-53 213.8 240 50.8
FvH4_6g32661 Fragaria vesca HOM05D008430 ORTHO05D010682 1.1e-49 201.8 135 77.8
FAN25G0652 Fragaria x ananassa HOM05D008430 ORTHO05D010682 9.0e-47 192.2 139 72.7
FAN02G1932 Fragaria x ananassa HOM05D008430 ORTHO05D010682 5.3e-39 166.4 111 76.6
FAN09G4635 Fragaria x ananassa HOM05D008430 ORTHO05D010682 1.3e-32 145.2 219 41.6
RcHm_v2.0_Chr5g0032121 Rosa chinensis HOM05D008430 ORTHO05D011995 6.5e-29 132.9 172 41.9
FvH4_1g22022 Fragaria vesca HOM05D002480 ORTHO05D003145 2.1e-24 117.9 446 28.3
FvH4_4g05731 Fragaria vesca HOM05D002480 ORTHO05D003145 3.7e-24 117.1 394 26.9
FAN15G2535 Fragaria x ananassa HOM05D008973 ORTHO05D011995 6.9e-23 112.8 159 38.4
FAN11G3668 Fragaria x ananassa HOM05D002480 ORTHO05D003145 7.6e-22 109.4 421 27.3
FAN03G2236 Fragaria x ananassa HOM05D002480 ORTHO05D003145 1.0e-21 109.0 459 27.2
FAN02G1343 Fragaria x ananassa HOM05D002480 ORTHO05D003145 2.2e-21 107.8 456 26.3
FAN10G1838 Fragaria x ananassa HOM05D008119 ORTHO05D010214 2.2e-21 107.8 264 30.7
RcHm_v2.0_Chr1g0350781 Rosa chinensis HOM05D008430 ORTHO05D010682 5.0e-21 106.7 107 50.5
FAN22G1509 Fragaria x ananassa HOM05D002480 ORTHO05D003145 1.1e-20 105.5 421 26.8
FAN03G0556 Fragaria x ananassa HOM05D008973 ORTHO05D011995 2.5e-20 104.4 135 38.5
FAN09G1485 Fragaria x ananassa HOM05D002480 ORTHO05D003145 2.5e-20 104.4 462 27.3
FvH4_4g01621 Fragaria vesca HOM05D008119 ORTHO05D010214 5.5e-20 103.2 333 28.8
FAN18G3922 Fragaria x ananassa HOM05D002480 ORTHO05D003145 7.2e-20 102.8 426 27.5
FAN24G3274 Fragaria x ananassa HOM05D008973 ORTHO05D011995 1.2e-19 102.1 290 32.8
FAN12G4356 Fragaria x ananassa HOM05D008119 ORTHO05D010214 1.6e-19 101.7 334 28.1
FAN28G0569 Fragaria x ananassa HOM05D002480 ORTHO05D003145 2.7e-19 100.9 417 26.9
FAN28G0938 Fragaria x ananassa HOM05D002480 ORTHO05D003145 3.5e-19 100.5 442 26.5
FvH4_7g10071 Fragaria vesca HOM05D002480 ORTHO05D003145 1.3e-18 98.6 432 26.6
FvH4_2g24951 Fragaria vesca HOM05D002480 ORTHO05D003145 1.8e-18 98.2 356 26.7
FvH4_7g00272 Fragaria vesca HOM05D008119 ORTHO05D010214 2.3e-18 97.8 190 31.1
FAN07G0316 Fragaria x ananassa HOM05D008119 ORTHO05D010214 5.1e-18 96.7 171 33.9
FAN12G1965 Fragaria x ananassa HOM05D002480 ORTHO05D003145 2.5e-17 94.4 210 31.0
FAN25G0074 Fragaria x ananassa HOM05D002480 ORTHO05D003145 2.5e-17 94.4 392 27.3
FAN28G0175 Fragaria x ananassa HOM05D002480 ORTHO05D003145 2.5e-17 94.4 220 32.3
FAN07G2503 Fragaria x ananassa HOM05D008430 ORTHO05D010713 5.7e-17 93.2 69 69.6
FAN16G3399 Fragaria x ananassa HOM05D008973 ORTHO05D011995 1.3e-16 92.0 161 33.5
FAN06G1617 Fragaria x ananassa HOM05D008119 ORTHO05D010214 1.6e-16 91.7 190 31.1
FAN18G3832 Fragaria x ananassa HOM05D002480 ORTHO05D003145 1.6e-16 91.7 212 31.6
FvH4_4g20100 Fragaria vesca HOM05D008119 ORTHO05D010214 2.2e-16 91.3 170 34.1
FAN13G2480 Fragaria x ananassa HOM05D008430 ORTHO05D010682 4.8e-16 90.1 212 33.5
FvH4_4g26661 Fragaria vesca HOM05D002480 ORTHO05D003145 8.2e-16 89.4 448 26.1
FvH4_1g20041 Fragaria vesca HOM05D008119 ORTHO05D010214 1.1e-15 89.0 146 34.2
FAN08G0405 Fragaria x ananassa HOM05D008430 ORTHO05D010682 2.4e-15 87.8 109 47.7
FAN03G1539 Fragaria x ananassa HOM05D002480 ORTHO05D003145 4.1e-15 87.0 424 26.9
FAN15G0096 Fragaria x ananassa HOM05D008430 ORTHO05D010682 4.1e-15 87.0 102 44.1
RcHm_v2.0_Chr2g0109311 Rosa chinensis HOM05D008119 ORTHO05D010214 9.0e-15 85.9 106 41.5
FvH4_4g07081 Fragaria vesca HOM05D008119 ORTHO05D010214 1.5e-14 85.1 170 32.4
FvH4_5g05871 Fragaria vesca HOM05D002480 ORTHO05D003145 1.5e-14 85.1 363 28.1
FAN26G0220 Fragaria x ananassa HOM05D002480 ORTHO05D003145 1.5e-14 85.1 385 26.8
RcHm_v2.0_Chr1g0320861 Rosa chinensis HOM05D009201 ORTHO05D005238 1.5e-14 85.1 193 29.5
FAN24G3444 Fragaria x ananassa HOM05D002480 ORTHO05D003145 2.6e-14 84.3 291 29.6
FAN25G1938 Fragaria x ananassa HOM05D002480 ORTHO05D003145 2.6e-14 84.3 456 26.1
FAN14G3390 Fragaria x ananassa HOM05D008430 ORTHO05D010682 4.5e-14 83.6 88 46.6
FvH4_6g19991 Fragaria vesca HOM05D008430 ORTHO05D010682 7.7e-14 82.8 71 64.8
FvH4_6g10711 Fragaria vesca HOM05D008430 ORTHO05D010682 1.3e-13 82.0 88 45.5
FAN06G5011 Fragaria x ananassa HOM05D002480 ORTHO05D003145 1.3e-13 82.0 387 25.1
FvH4_5g12461 Fragaria vesca HOM05D002480 ORTHO05D003145 2.2e-13 81.3 312 27.2
FAN23G1644 Fragaria x ananassa HOM05D002480 ORTHO05D003145 2.2e-13 81.3 390 24.9
QL02p008707 Quercus lobata HOM05D000003 ORTHO05D000126 2.9e-13 80.9 208 31.2
FvH4_7g00030 Fragaria vesca HOM05D002480 ORTHO05D003145 5.0e-13 80.1 333 27.3
FAN18G2574 Fragaria x ananassa HOM05D008973 ORTHO05D010682 5.0e-13 80.1 93 44.1
FAN19G3008 Fragaria x ananassa HOM05D008973 ORTHO05D011995 5.0e-13 80.1 101 35.6
FAN25G2720 Fragaria x ananassa HOM05D008119 ORTHO05D010214 5.0e-13 80.1 98 41.8
FAN06G0453 Fragaria x ananassa HOM05D008119 ORTHO05D010214 6.5e-13 79.7 330 25.5
FAN28G0050 Fragaria x ananassa HOM05D008973 ORTHO05D011995 1.4e-12 78.6 139 36.0
FAN28G2861 Fragaria x ananassa HOM05D008973 ORTHO05D011995 1.4e-12 78.6 139 36.0
FAN15G1902 Fragaria x ananassa HOM05D002480 ORTHO05D003145 2.5e-12 77.8 422 26.5
FvH4_5g30551 Fragaria vesca HOM05D002480 ORTHO05D003145 3.2e-12 77.4 309 29.1
FvH4_6g07931 Fragaria vesca HOM05D002480 ORTHO05D003145 7.2e-12 76.3 313 29.7
FAN12G2566 Fragaria x ananassa HOM05D002480 ORTHO05D003145 9.4e-12 75.9 293 28.3
FAN10G1469 Fragaria x ananassa HOM05D003375 ORTHO05D004719 1.6e-11 75.1 366 21.9
Atru.chr11.1735 Acer truncatum HOM05D000003 ORTHO05D000126 2.1e-11 74.7 182 22.5
FAN16G2492 Fragaria x ananassa HOM05D002480 ORTHO05D003145 2.1e-11 74.7 304 27.0
FAN26G1563 Fragaria x ananassa HOM05D008973 ORTHO05D011995 2.1e-11 74.7 126 35.7
Atru.chr4.689 Acer truncatum HOM05D000003 ORTHO05D000126 3.6e-11 73.9 182 23.1
FAN10G3390 Fragaria x ananassa HOM05D002480 ORTHO05D003145 4.6e-11 73.6 334 26.6
FAN12G3740 Fragaria x ananassa HOM05D008430 ORTHO05D010682 6.1e-11 73.2 75 49.3
FvH4_2g30300 Fragaria vesca HOM05D008430 ORTHO05D010682 7.9e-11 72.8 95 44.2
QL11p000243 Quercus lobata HOM05D000003 ORTHO05D000126 7.9e-11 72.8 197 27.9
FvH4_3g20250 Fragaria vesca HOM05D029930 ORTHO05D045907 1.0e-10 72.4 176 32.4
FvH4_4g13902 Fragaria vesca HOM05D008119 ORTHO05D010214 1.4e-10 72.0 274 28.1
RcHm_v2.0_Chr3g0472781 Rosa chinensis HOM05D009201 ORTHO05D005238 1.4e-10 72.0 147 29.3
FvH4_2g07601 Fragaria vesca HOM05D002480 ORTHO05D003145 2.3e-10 71.2 162 30.9
FvH4_4g05732 Fragaria vesca HOM05D002480 ORTHO05D003145 3.0e-10 70.9 244 28.3
FAN14G0992 Fragaria x ananassa HOM05D002480 ORTHO05D003145 3.0e-10 70.9 133 33.1
FAN05G5003 Fragaria x ananassa HOM05D002480 ORTHO05D003145 5.1e-10 70.1 132 32.6
FAN08G1660 Fragaria x ananassa HOM05D002480 ORTHO05D003145 5.1e-10 70.1 352 27.3
QL03p023077 Quercus lobata HOM05D000003 ORTHO05D000126 6.7e-10 69.7 167 29.3
RcHm_v2.0_Chr1g0344871 Rosa chinensis HOM05D003375 ORTHO05D004719 8.8e-10 69.3 172 25.0
Aa31LG1G7790 Aethionema arabicum HOM05D000496 ORTHO05D000411 1.5e-09 68.6 188 26.1
FAN25G2489 Fragaria x ananassa HOM05D008119 ORTHO05D010214 1.5e-09 68.6 127 31.5
FAN09G2457 Fragaria x ananassa HOM05D002480 ORTHO05D003145 2.0e-09 68.2 147 29.9
QL03p061024 Quercus lobata HOM05D000003 ORTHO05D000126 2.5e-09 67.8 170 28.8
FAN09G0095 Fragaria x ananassa HOM05D002480 ORTHO05D003145 4.3e-09 67.0 212 25.9
FAN14G5553 Fragaria x ananassa HOM05D002480 ORTHO05D003145 4.3e-09 67.0 295 29.5
QL04p035033 Quercus lobata HOM05D000003 ORTHO05D000126 5.7e-09 66.6 171 28.7
FAN04G2250 Fragaria x ananassa HOM05D002480 ORTHO05D003145 7.4e-09 66.2 195 29.2
FvH4_3g05891 Fragaria vesca HOM05D000003 ORTHO05D000126 9.7e-09 65.9 201 24.9
FAN09G4566 Fragaria x ananassa HOM05D002480 ORTHO05D003145 9.7e-09 65.9 372 23.9
FAN18G3828 Fragaria x ananassa HOM05D002480 ORTHO05D003145 9.7e-09 65.9 315 27.3
RcHm_v2.0_Chr3g0469891 Rosa chinensis HOM05D008119 ORTHO05D010214 9.7e-09 65.9 114 36.8
TWI63G1223 Tripterygium wilfordii HOM05D000003 ORTHO05D000126 9.7e-09 65.9 196 26.5
CANSAT11G1672 Cannabis sativa HOM05D000003 ORTHO05D000126 1.3e-08 65.5 189 27.0
Dinv10075 Davidia involucrata HOM05D000003 ORTHO05D000126 1.3e-08 65.5 169 29.6
Aa31LG9G3350 Aethionema arabicum HOM05D000496 ORTHO05D000411 2.2e-08 64.7 246 24.0
FAN21G0152 Fragaria x ananassa HOM05D008119 ORTHO05D010214 2.2e-08 64.7 127 31.5
FAN24G3540 Fragaria x ananassa HOM05D008973 ORTHO05D011995 2.2e-08 64.7 331 26.9
CANSAT80G1589 Cannabis sativa HOM05D000003 ORTHO05D000126 2.8e-08 64.3 202 24.3
FAN16G3021 Fragaria x ananassa HOM05D008430 ORTHO05D010682 2.8e-08 64.3 55 58.2
Lj6g0022847 Lotus japonicus HOM05D000003 ORTHO05D000126 2.8e-08 64.3 194 24.2
FvH4_4g13551 Fragaria vesca HOM05D002480 ORTHO05D003145 3.7e-08 63.9 311 23.8
FAN08G2294 Fragaria x ananassa HOM05D008119 ORTHO05D010214 3.7e-08 63.9 161 27.3
Aa31sc1015G10 Aethionema arabicum HOM05D000496 ORTHO05D000411 6.3e-08 63.2 146 28.1
QL04p035245 Quercus lobata HOM05D000003 ORTHO05D000126 6.3e-08 63.2 173 28.3
FAN06G4257 Fragaria x ananassa HOM05D002480 ORTHO05D003145 8.2e-08 62.8 339 26.5
FAN12G0307 Fragaria x ananassa HOM05D002480 ORTHO05D003145 8.2e-08 62.8 407 25.3
FAN17G1313 Fragaria x ananassa HOM05D002480 ORTHO05D003145 8.2e-08 62.8 145 32.4
Manes.04G087125 Manihot esculenta HOM05D000003 ORTHO05D000006 8.2e-08 62.8 186 25.8
Lj1g0020376 Lotus japonicus HOM05D000003 ORTHO05D000126 1.1e-07 62.4 257 22.6
Lj4g0023032 Lotus japonicus HOM05D000003 ORTHO05D000126 1.4e-07 62.0 191 25.7
Ah.06g186500 Amaranthus hybridus HOM05D000003 ORTHO05D000126 1.8e-07 61.6 184 25.5
SHI39369 Sapria himalayana HOM05D000003 ORTHO05D000006 1.8e-07 61.6 173 26.0
FAN12G1540 Fragaria x ananassa HOM05D003375 ORTHO05D004719 3.1e-07 60.8 157 26.8
FAN16G1534 Fragaria x ananassa HOM05D002480 ORTHO05D003145 3.1e-07 60.8 168 25.0
QL04p035145 Quercus lobata HOM05D000003 ORTHO05D000126 3.1e-07 60.8 154 29.2
QL08p005297 Quercus lobata HOM05D000003 ORTHO05D000006 3.1e-07 60.8 183 25.1
QL04p035160 Quercus lobata HOM05D000003 ORTHO05D000126 4.1e-07 60.5 291 24.1
CANSAT25G2525 Cannabis sativa HOM05D000003 ORTHO05D000004 5.3e-07 60.1 201 24.9
Dinv24168 Davidia involucrata HOM05D000723 ORTHO05D001760 5.3e-07 60.1 273 23.8
Lj4C700T0 Lonicera japonica HOM05D000003 ORTHO05D000126 5.3e-07 60.1 197 24.9
QL02p016877 Quercus lobata HOM05D000003 ORTHO05D000126 5.3e-07 60.1 169 26.0
QL08p015789 Quercus lobata HOM05D000003 ORTHO05D000126 5.3e-07 60.1 165 30.3
Aa31sc480G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.9e-07 59.7 206 26.7
FvH4_2g06311 Fragaria vesca HOM05D020406 ORTHO05D010682 6.9e-07 59.7 65 47.7
QL02p097725 Quercus lobata HOM05D000003 ORTHO05D000004 6.9e-07 59.7 164 22.6
QL03p031860 Quercus lobata HOM05D000003 ORTHO05D000126 6.9e-07 59.7 165 30.3
Sed0000842 Sechium edule HOM05D000003 ORTHO05D000126 6.9e-07 59.7 180 26.1
BcaC06g36411 Brassica carinata HOM05D000496 ORTHO05D000411 9.1e-07 59.3 145 26.2
FvH4_3g34441 Fragaria vesca HOM05D002480 ORTHO05D003145 9.1e-07 59.3 386 24.9
FvH4_4g13621 Fragaria vesca HOM05D002480 ORTHO05D003145 9.1e-07 59.3 192 30.2
QL04p035086 Quercus lobata HOM05D000003 ORTHO05D000126 9.1e-07 59.3 161 29.2
RcHm_v2.0_Chr6g0265951 Rosa chinensis HOM05D008430 ORTHO05D010682 1.2e-06 58.9 125 32.8
CANSAT13G0002 Cannabis sativa HOM05D000003 ORTHO05D000126 1.5e-06 58.5 203 26.1
CANSAT54G2080 Cannabis sativa HOM05D000003 ORTHO05D000126 1.5e-06 58.5 206 26.7
FvH4_6g28831 Fragaria vesca HOM05D002480 ORTHO05D003145 1.5e-06 58.5 75 38.7
BcaC01g02297 Brassica carinata HOM05D000496 ORTHO05D000411 2.0e-06 58.2 200 23.5
CANSAT64G1979 Cannabis sativa HOM05D000003 ORTHO05D000126 3.4e-06 57.4 205 26.3
FAN18G1129 Fragaria x ananassa HOM05D002480 ORTHO05D003145 3.4e-06 57.4 270 25.9
QL04p037748 Quercus lobata HOM05D000003 ORTHO05D000126 3.4e-06 57.4 184 28.3
Aa31sc387G10 Aethionema arabicum HOM05D000496 ORTHO05D000411 4.5e-06 57.0 191 24.6
AUR62039640 Chenopodium quinoa HOM05D000003 ORTHO05D000126 4.5e-06 57.0 202 23.8
Thhalv10014628m.g Eutrema salsugineum HOM05D000496 ORTHO05D000411 4.5e-06 57.0 194 26.3
FvH4_6g26861 Fragaria vesca HOM05D008119 ORTHO05D010214 4.5e-06 57.0 163 29.4
FAN05G4151 Fragaria x ananassa HOM05D002480 ORTHO05D003145 4.5e-06 57.0 122 31.1
BcaB02g11232 Brassica carinata HOM05D000496 ORTHO05D000411 5.9e-06 56.6 130 28.5
FAN12G2038 Fragaria x ananassa HOM05D002480 ORTHO05D003145 5.9e-06 56.6 298 25.8
Aa31LG1G4950 Aethionema arabicum HOM05D000496 ORTHO05D000411 7.7e-06 56.2 176 23.9
CANSAT21G0791 Cannabis sativa HOM05D000003 ORTHO05D000126 7.7e-06 56.2 196 24.5
FAN15G2195 Fragaria x ananassa HOM05D003375 ORTHO05D004719 7.7e-06 56.2 347 22.5


User provided reference genes

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