Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 2134.4 1100 100.0
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 0.0e+00 2098.9 1100 98.5
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 2040.4 1104 95.7
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 2035.8 1104 95.4
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1892.1 1104 88.5
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1882.1 1104 88.1
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1636.7 881 95.3
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 0.0e+00 1568.5 1110 72.5
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 0.0e+00 1557.0 1108 72.5
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 0.0e+00 1317.8 1086 62.8
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 0.0e+00 1306.6 1120 61.8
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 0.0e+00 1280.0 1068 62.5
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 0.0e+00 1275.4 1111 59.9
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 0.0e+00 1270.0 1099 60.1
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 0.0e+00 1239.2 1102 59.4
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 0.0e+00 1236.1 1115 59.6
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 0.0e+00 1214.5 1116 58.0
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 0.0e+00 1205.7 1073 59.8
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 0.0e+00 1198.3 1112 56.9
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 0.0e+00 1195.3 1095 57.2
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 0.0e+00 1193.3 1098 57.3
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 0.0e+00 1192.6 1087 57.7
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1188.3 1100 56.7
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 0.0e+00 1182.5 1099 56.9
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 0.0e+00 1179.1 1099 56.9
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 0.0e+00 1168.3 1093 56.4
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 0.0e+00 1167.9 1100 56.3
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 0.0e+00 1162.9 1109 56.9
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 0.0e+00 1150.6 1090 54.9
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 0.0e+00 1149.8 1091 54.6
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 0.0e+00 1134.0 1102 55.2
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 0.0e+00 1131.7 1100 55.1
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 0.0e+00 1128.6 1093 53.6
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 0.0e+00 1123.6 1096 54.7
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 0.0e+00 1112.1 1097 54.5
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 0.0e+00 1108.6 1118 53.6
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 0.0e+00 1104.7 1119 54.1
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 0.0e+00 1092.0 1097 55.1
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 0.0e+00 1088.2 1037 54.2
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1085.9 1096 53.3
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1085.9 1095 53.5
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 7.5e-312 1074.7 619 89.7
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 3.1e-308 1062.0 1151 52.6
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 2.2e-306 1055.8 1092 51.6
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 5.5e-305 1051.2 1117 50.0
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 7.2e-305 1050.8 1103 49.6
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 1.6e-304 1049.7 1088 51.4
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 4.7e-304 1048.1 1097 51.5
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 1.4e-303 1046.6 1023 55.0
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 1.1e-302 1043.5 1120 50.6
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 8.2e-301 1037.3 1095 51.4
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 2.6e-299 1032.3 1103 50.0
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 2.2e-298 1029.2 1092 50.8
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 2.9e-298 1028.9 1088 50.6
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 5.0e-298 1028.1 1098 50.7
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 9.4e-297 1023.8 1124 50.2
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 8.3e-293 1010.7 1119 49.5
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 5.4e-292 1008.1 1117 49.5
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 1.0e-290 1003.8 913 57.1
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 2.7e-288 995.7 1123 50.2
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 4.7e-288 995.0 1117 47.9
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 7.5e-286 987.6 1066 49.9
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 1.8e-279 966.5 948 56.3
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 4.0e-279 965.3 1034 51.2
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 2.0e-278 963.0 964 55.0
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 4.9e-277 958.4 1101 48.4
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 7.3e-273 944.5 950 55.7
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 6.6e-266 921.4 1102 47.6
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 1.1e-265 920.6 1104 47.1
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 2.5e-265 919.5 1107 46.5
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 3.3e-265 919.1 822 58.5
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 2.1e-259 899.8 968 50.9
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 1.5e-257 893.6 1099 45.3
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 1.4e-255 887.1 1153 44.8
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 8.9e-255 884.4 773 59.1
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 7.1e-252 874.8 1114 45.1
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 3.6e-248 862.4 1125 43.7
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 7.6e-246 854.7 893 50.8
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 1.3e-232 810.8 1102 42.2
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 7.6e-230 801.6 961 46.4
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 9.9e-230 801.2 1088 42.1
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 2.7e-203 713.4 733 53.9
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 1.7e-200 704.1 751 49.9
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 3.7e-200 703.0 792 51.0
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 6.3e-184 649.0 385 87.0
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.0e-173 615.1 1105 35.4
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.3e-173 614.8 931 42.1
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 2.6e-169 600.5 726 47.8
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 7.0e-151 539.3 1157 31.7
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 5.0e-149 533.1 701 44.7
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 3.6e-147 526.9 1343 28.7
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 5.6e-124 449.9 465 54.0
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 3.6e-123 447.2 451 55.7
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 5.8e-105 386.7 339 61.4
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 3.3e-100 370.9 1230 28.7
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 4.8e-99 367.1 339 59.9
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 4.6e-94 350.5 331 57.4
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.3e-91 342.4 339 54.0
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.4e-90 338.2 593 39.0
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 5.0e-80 303.9 297 54.5
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 2.3e-77 295.0 298 51.7
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 8.2e-75 286.6 291 52.2
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 8.0e-70 270.0 277 50.5
Sabra06G0038400 Salix brachista HOM05D005711 ORTHO05D007125 1.3e-64 252.7 229 60.3
FvH4_7g07941 Fragaria vesca HOM05D005711 ORTHO05D007125 6.8e-61 240.4 127 96.9
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 9.8e-60 236.5 357 39.5
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 3.6e-54 218.0 261 49.0
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 4.7e-54 217.6 126 90.5
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.3e-53 215.3 126 89.7
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 5.2e-53 214.2 126 89.7
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 4.5e-49 201.1 180 53.9
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 8.6e-48 196.8 389 36.2
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 7.5e-44 183.7 299 40.8
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 1.1e-42 179.9 204 47.1
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 3.5e-41 174.9 194 44.3
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 6.0e-41 174.1 157 51.6
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 2.3e-40 172.2 166 51.8
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 2.5e-39 168.7 316 37.0
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 2.1e-38 165.6 492 29.3
BcaC07g40361 Brassica carinata HOM05D005711 ORTHO05D007125 6.2e-38 164.1 138 60.9
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 7.0e-34 150.6 460 26.5
FAN26G1840 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.3e-29 135.6 131 56.5
Nitab4.5_0010669g0030 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.2e-17 96.7 161 39.1
SalBow4G0785 Salvia bowleyana HOM05D005711 ORTHO05D007125 2.1e-17 95.9 153 37.3
FAN04G1389 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.3e-16 92.4 50 94.0
CBR_g41430 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-15 89.7 232 27.6
Rhsim03G0016400 Rhododendron simsii HOM05D005711 ORTHO05D007125 4.3e-15 88.2 85 56.5
SEGI_21308 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 4.4e-12 78.2 85 44.7
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 4.9e-11 74.7 62 56.5
Hma1.2p1_0247F.1_g101870 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 2.1e-09 69.3 94 40.4
MCO09G818 Micromonas commoda HOM05D005711 ORTHO05D007125 1.0e-08 67.0 405 20.5
BolC4t25036H Brassica oleracea HOM05D005711 ORTHO05D040726 1.7e-08 66.2 118 39.0
Thecc.05G161000 Theobroma cacao HOM05D005711 ORTHO05D007125 2.8e-06 58.9 43 62.8


User provided reference genes

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