Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 2.9e-76 288.9 190 100.0
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 6.2e-71 271.2 190 94.7
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 6.2e-63 244.6 190 87.9
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 1.8e-41 173.3 204 64.2
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 2.1e-39 166.4 221 52.9
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 3.1e-38 162.5 193 57.5
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 3.1e-38 162.5 134 62.7
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 2.6e-37 159.5 196 53.6
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 4.5e-37 158.7 196 51.5
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 5.8e-37 158.3 197 49.2
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.0e-36 157.5 136 61.8
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 4.9e-36 155.2 228 53.5
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 3.2e-35 152.5 128 62.5
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 7.1e-35 151.4 128 62.5
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 7.1e-35 151.4 200 56.0
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 9.3e-35 151.0 138 60.1
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 2.1e-34 149.8 134 60.4
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 2.7e-34 149.4 132 60.6
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 6.0e-34 148.3 199 56.8
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 7.9e-34 147.9 134 59.7
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 7.9e-34 147.9 197 53.3
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 1.0e-33 147.5 206 56.3
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.0e-33 147.5 197 54.3
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 5.1e-33 145.2 195 52.8
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 8.7e-33 144.4 201 50.2
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 8.7e-33 144.4 197 53.8
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 1.1e-32 144.1 198 55.6
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 3.3e-32 142.5 203 57.6
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 3.3e-32 142.5 129 57.4
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 4.3e-32 142.1 132 54.5
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 9.6e-32 141.0 129 58.9
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 9.6e-32 141.0 129 58.9
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 1.6e-31 140.2 134 58.2
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 2.1e-31 139.8 155 52.9
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 2.1e-31 139.8 132 56.8
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 2.1e-31 139.8 206 46.6
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 2.1e-31 139.8 205 44.9
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.8e-31 139.4 205 55.1
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 3.7e-31 139.0 129 55.8
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 4.8e-31 138.7 128 57.0
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 6.3e-31 138.3 136 58.8
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 8.2e-31 137.9 133 55.6
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 1.4e-30 137.1 136 51.5
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.8e-30 136.7 207 47.3
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 3.1e-30 136.0 200 49.0
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 3.1e-30 136.0 138 55.1
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 4.1e-30 135.6 208 55.3
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 5.3e-30 135.2 128 55.5
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 5.3e-30 135.2 129 55.8
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 9.0e-30 134.4 134 57.5
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 1.5e-29 133.7 199 49.2
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 2.0e-29 133.3 133 56.4
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 2.6e-29 132.9 199 45.2
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 3.4e-29 132.5 137 53.3
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 4.5e-29 132.1 130 57.7
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 4.5e-29 132.1 193 48.2
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 5.9e-29 131.7 132 55.3
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 2.9e-28 129.4 201 47.8
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 5.0e-28 128.6 135 51.9
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 6.5e-28 128.3 200 52.5
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 8.4e-28 127.9 133 51.1
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 8.4e-28 127.9 197 51.3
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.1e-27 127.5 128 54.7
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 1.4e-27 127.1 117 58.1
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 9.3e-27 124.4 128 51.6
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 2.1e-26 123.2 125 52.8
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.5e-26 122.5 196 43.9
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 6.1e-26 121.7 128 51.6
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 1.3e-25 120.6 115 56.5
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.8e-25 120.2 134 50.7
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 1.8e-25 120.2 136 51.5
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 2.3e-25 119.8 197 45.7
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.3e-25 119.8 131 52.7
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 2.3e-25 119.8 131 52.7
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 5.1e-25 118.6 112 54.5
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 5.1e-25 118.6 112 57.1
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 6.7e-25 118.2 193 46.6
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 8.7e-25 117.9 130 51.5
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.1e-24 117.5 131 51.1
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.9e-24 116.7 124 52.4
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.5e-24 116.3 131 51.9
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 4.3e-24 115.5 130 51.5
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 4.3e-24 115.5 116 50.9
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 4.3e-24 115.5 116 50.9
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 4.3e-24 115.5 116 50.9
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 4.3e-24 115.5 193 46.1
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 7.4e-24 114.8 193 46.6
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 9.7e-24 114.4 131 50.4
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 9.7e-24 114.4 125 50.4
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 9.7e-24 114.4 135 50.4
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 1.3e-23 114.0 135 51.1
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 2.2e-23 113.2 135 49.6
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 2.8e-23 112.8 215 47.0
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 4.8e-23 112.1 136 50.0
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 8.2e-23 111.3 130 50.8
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 8.2e-23 111.3 138 47.8
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 1.1e-22 110.9 122 51.6
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 1.4e-22 110.5 199 43.7
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 1.4e-22 110.5 192 50.0
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 3.1e-22 109.4 101 56.4
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 5.3e-22 108.6 136 50.0
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 5.3e-22 108.6 136 48.5
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 5.3e-22 108.6 209 45.5
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 1.2e-21 107.5 135 47.4
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 2.0e-21 106.7 136 47.8
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.6e-21 106.3 208 49.0
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 2.6e-21 106.3 111 52.3
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 3.4e-21 105.9 123 48.8
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 3.4e-21 105.9 123 48.8
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 5.9e-21 105.1 125 48.0
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 7.7e-21 104.8 117 49.6
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 7.7e-21 104.8 117 49.6
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 1.3e-20 104.0 122 48.4
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 1.7e-20 103.6 119 48.7
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 2.9e-20 102.8 152 50.7
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 8.5e-20 101.3 202 40.1
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 1.9e-19 100.1 119 46.2
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 1.9e-19 100.1 119 46.2
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 4.2e-19 99.0 117 46.2
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.2e-18 97.4 123 47.2
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.2e-18 97.4 126 46.8
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 1.2e-18 97.4 126 45.2
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 2.7e-18 96.3 132 43.2
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 3.6e-18 95.9 125 46.4
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 4.6e-18 95.5 125 45.6
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 4.6e-18 95.5 125 45.6
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 6.1e-18 95.1 77 59.7
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 7.9e-18 94.7 125 43.2
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.0e-17 94.4 72 62.5
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 3.9e-17 92.4 74 60.8
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.1e-16 90.9 130 43.8
FAN10G1293 Fragaria x ananassa HOM05D004771 ORTHO05D005565 1.1e-16 90.9 145 59.3
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 1.1e-16 90.9 73 60.3
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 1.7e-15 87.0 121 46.3
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 1.1e-14 84.3 89 51.7
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 3.1e-14 82.8 184 34.8
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 5.3e-14 82.0 197 44.7
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 9.1e-14 81.3 144 41.0
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 2.6e-13 79.7 141 39.0
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 3.4e-13 79.3 122 41.8
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 1.0e-12 77.8 59 61.0
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 8.5e-12 74.7 66 56.1
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.9e-11 73.6 63 54.0
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 4.2e-11 72.4 60 56.7
FvH4_7g09300 Fragaria vesca HOM05D004771 ORTHO05D005565 6.1e-10 68.6 95 81.1
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 1.0e-09 67.8 117 37.6
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.0e-09 66.2 53 60.4
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 8.8e-09 64.7 62 53.2
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.8e-07 59.7 63 49.2
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 4.8e-07 58.9 53 52.8
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 2.4e-06 56.6 51 52.9


User provided reference genes

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