Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 6.1e-191 670.6 330 100.0
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.3e-132 474.2 305 81.6
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 6.0e-114 414.8 266 82.0
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.0e-113 412.5 272 79.4
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.1e-112 410.6 266 81.2
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.6e-111 405.6 270 78.5
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 4.8e-111 405.2 266 80.5
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 1.4e-107 393.7 264 77.3
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 4.0e-102 375.6 264 75.0
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 1.2e-101 374.0 264 75.0
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 6.9e-94 348.2 253 72.3
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 2.5e-91 339.7 265 65.7
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 5.5e-91 338.6 263 68.4
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 3.9e-89 332.4 263 67.7
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.1e-88 330.9 262 66.8
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 1.9e-88 330.1 266 66.2
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 4.3e-88 328.9 300 59.7
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 1.6e-87 327.0 262 66.0
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.6e-87 327.0 262 65.6
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 2.8e-87 326.2 262 65.6
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 2.8e-87 326.2 263 65.4
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 3.7e-87 325.9 266 65.0
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 3.7e-87 325.9 262 63.7
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 6.9e-86 321.6 263 64.3
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 9.0e-86 321.2 266 63.9
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 1.2e-85 320.9 266 64.3
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 1.2e-85 320.9 264 66.3
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 2.0e-85 320.1 263 63.9
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 2.0e-85 320.1 263 63.5
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 3.4e-85 319.3 254 66.9
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 7.7e-85 318.2 266 63.5
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 7.7e-85 318.2 266 64.3
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 1.0e-84 317.8 253 66.0
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 2.2e-84 316.6 253 65.6
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 6.5e-84 315.1 253 65.6
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 8.5e-84 314.7 263 60.8
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.1e-83 314.3 262 61.8
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 1.4e-83 313.9 262 61.5
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 1.4e-83 313.9 262 63.0
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 1.9e-83 313.5 266 60.9
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.9e-83 313.5 262 61.1
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.9e-83 313.5 262 61.5
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 2.5e-83 313.2 251 65.3
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 4.2e-83 312.4 262 61.1
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 4.2e-83 312.4 262 61.5
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 4.2e-83 312.4 263 60.5
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 4.2e-83 312.4 262 61.8
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 5.5e-83 312.0 265 60.8
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 7.2e-83 311.6 262 61.5
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 9.4e-83 311.2 262 61.1
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 9.4e-83 311.2 262 61.1
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.2e-82 310.8 262 63.4
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 1.2e-82 310.8 262 63.4
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.6e-82 310.5 262 63.4
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 2.1e-82 310.1 251 61.8
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 2.7e-82 309.7 266 63.2
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 4.6e-82 308.9 280 58.2
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 7.9e-82 308.1 262 59.5
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 1.0e-81 307.8 251 61.4
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.0e-81 307.8 263 60.5
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 1.4e-81 307.4 267 60.3
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 2.3e-81 306.6 259 59.8
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 2.3e-81 306.6 253 64.8
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 3.0e-81 306.2 259 62.2
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 3.0e-81 306.2 250 61.6
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 3.0e-81 306.2 266 62.8
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 3.9e-81 305.8 262 60.7
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 5.1e-81 305.4 266 62.0
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 5.1e-81 305.4 258 62.4
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 6.7e-81 305.1 263 62.4
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 6.7e-81 305.1 285 60.0
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 2.0e-80 303.5 263 62.0
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 2.5e-80 303.1 259 59.5
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 3.3e-80 302.8 259 59.5
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 7.4e-80 301.6 266 60.9
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 7.4e-80 301.6 266 60.5
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 7.4e-80 301.6 249 63.5
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.7e-79 300.4 266 59.8
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 3.7e-79 299.3 262 61.1
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 3.7e-79 299.3 259 59.8
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 3.7e-79 299.3 262 59.9
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 3.7e-79 299.3 249 63.5
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 4.8e-79 298.9 253 60.9
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 4.8e-79 298.9 259 59.8
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 1.1e-78 297.7 262 59.9
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 1.1e-78 297.7 255 63.5
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 1.4e-78 297.4 242 66.1
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 1.8e-78 297.0 265 60.0
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 2.4e-78 296.6 266 59.4
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 2.4e-78 296.6 262 59.2
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 3.1e-78 296.2 262 60.3
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 3.1e-78 296.2 262 59.9
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 5.3e-78 295.4 240 66.2
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 5.3e-78 295.4 251 62.2
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 6.9e-78 295.0 259 59.5
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 6.9e-78 295.0 262 60.7
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 9.1e-78 294.7 262 59.5
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 9.1e-78 294.7 262 59.5
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 9.1e-78 294.7 255 62.0
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 9.1e-78 294.7 255 62.0
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 1.2e-77 294.3 266 59.4
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 2.0e-77 293.5 242 62.8
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 1.3e-76 290.8 248 61.7
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 5.0e-76 288.9 274 60.6
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 8.5e-76 288.1 265 57.4
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 1.9e-75 287.0 262 58.0
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 2.5e-75 286.6 259 59.1
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 3.2e-75 286.2 240 60.4
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 4.2e-75 285.8 262 58.4
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 5.5e-75 285.4 238 60.5
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 1.6e-74 283.9 237 59.9
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 7.9e-74 281.6 242 61.6
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 1.8e-73 280.4 244 59.4
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 1.8e-73 280.4 262 56.9
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 3.9e-73 279.3 253 58.9
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 6.7e-73 278.5 240 60.4
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 8.8e-73 278.1 239 60.3
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 1.1e-72 277.7 243 59.3
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 1.1e-72 277.7 243 59.3
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 2.0e-72 276.9 257 55.6
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 3.1e-70 269.6 246 58.9
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 5.3e-70 268.9 264 55.7
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 5.0e-68 262.3 238 57.6
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 8.5e-68 261.5 249 56.6
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 1.1e-67 261.2 247 56.3
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 1.6e-66 257.3 262 55.7
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 3.6e-66 256.1 253 54.2
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 6.7e-65 251.9 234 56.8
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 8.8e-65 251.5 250 54.4
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 1.5e-64 250.8 222 60.8
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 4.4e-64 249.2 234 56.8
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 7.4e-64 248.4 258 53.1
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.2e-63 245.0 182 73.1
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 2.4e-62 243.4 249 53.4
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 4.1e-62 242.7 265 52.5
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 5.3e-62 242.3 238 52.9
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 7.0e-62 241.9 254 55.1
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.9e-59 233.8 262 53.1
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 5.5e-59 232.3 213 59.2
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 9.4e-59 231.5 283 50.5
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 6.1e-58 228.8 233 53.2
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 3.1e-54 216.5 250 51.2
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 9.1e-54 214.9 243 49.4
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.0e-52 211.5 266 47.0
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 8.5e-52 208.4 194 57.2
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 5.5e-51 205.7 194 56.7
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 2.1e-50 203.8 128 76.6
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 2.7e-50 203.4 280 47.5
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 6.1e-50 202.2 248 46.4
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.8e-49 200.7 257 45.5
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 5.2e-49 199.1 250 47.6
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 4.4e-48 196.1 188 55.3
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 9.8e-48 194.9 257 44.0
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 1.4e-46 191.0 247 47.4
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 4.2e-43 179.5 246 42.3
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.8e-42 176.8 221 48.0
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 1.2e-37 161.4 274 38.3
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.6e-37 161.0 103 69.9
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 3.5e-37 159.8 236 42.8
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.3e-36 157.9 113 67.3
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 3.7e-31 139.8 275 36.7
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 1.0e-28 131.7 100 64.0
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 2.3e-28 130.6 155 52.3
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 5.0e-28 129.4 188 38.3
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 6.2e-26 122.5 197 44.2
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 8.9e-25 118.6 83 72.3
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 2.6e-24 117.1 130 53.1
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 6.0e-21 105.9 62 80.6
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 3.9e-20 103.2 157 44.6
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 8.1e-18 95.5 192 31.8
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 4.1e-14 83.2 69 60.9
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 8.1e-10 68.9 108 38.9
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 1.7e-07 61.2 237 24.5
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 2.2e-07 60.8 40 62.5
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 8.4e-07 58.9 110 40.0
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 5.4e-06 56.2 78 39.7


User provided reference genes

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