Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.1e-281 972.6 495 100.0
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 2.7e-219 765.4 504 83.1
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 3.7e-216 755.0 496 82.5
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 6.6e-173 611.3 527 67.6
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.1e-172 610.5 492 72.8
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 5.9e-166 588.2 521 67.0
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.9e-151 540.0 525 60.8
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 1.7e-144 516.9 527 60.3
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.3e-140 501.5 520 59.8
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 6.2e-139 498.4 520 58.7
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 6.5e-112 408.7 501 52.3
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 1.6e-110 404.1 364 65.4
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 1.5e-79 301.2 528 42.6
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 7.2e-79 298.9 537 43.8
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.7e-67 261.2 135 99.3
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 8.0e-62 242.3 517 39.3
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 3.7e-59 233.4 542 38.4
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.8e-58 231.1 529 37.6
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 5.6e-55 219.5 535 37.8
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.6e-54 218.0 165 73.3
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 1.6e-54 218.0 539 36.4
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 3.4e-52 210.3 527 36.2
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 2.5e-47 194.1 543 33.5
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 1.1e-45 188.7 536 34.7
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 6.4e-43 179.5 514 32.3
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 5.4e-42 176.4 380 37.6
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 1.6e-41 174.9 514 32.7
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 7.3e-39 166.0 542 31.5
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 2.1e-38 164.5 358 37.7
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 4.0e-37 160.2 504 31.3
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 8.9e-37 159.1 544 32.7
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 2.0e-36 157.9 461 32.8
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 4.4e-36 156.8 531 31.6
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 1.1e-34 152.1 326 35.3
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 1.9e-34 151.4 529 30.8
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 5.4e-34 149.8 436 32.6
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 1.2e-33 148.7 491 31.0
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 2.7e-33 147.5 542 30.4
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 1.3e-32 145.2 524 30.0
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.5e-31 141.7 368 34.2
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 5.6e-31 139.8 525 29.7
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 9.5e-31 139.0 466 31.5
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 1.2e-30 138.7 499 29.3
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 1.6e-30 138.3 513 30.4
FAN20G1594 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.7e-30 136.7 139 56.1
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 3.1e-29 134.0 365 32.6
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 5.2e-29 133.3 508 29.7
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 5.2e-29 133.3 509 30.5
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.5e-28 131.7 368 32.6
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 2.0e-28 131.3 525 31.0
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 2.0e-28 131.3 357 33.3
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 5.8e-28 129.8 500 28.2
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 5.8e-28 129.8 509 29.5
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 4.9e-27 126.7 345 34.2
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 8.4e-27 125.9 516 27.3
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 2.4e-26 124.4 402 34.1
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 4.2e-26 123.6 409 30.6
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 7.1e-26 122.9 514 29.8
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 2.1e-25 121.3 283 32.5
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 2.1e-25 121.3 358 32.4
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 4.6e-25 120.2 497 28.4
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 1.0e-24 119.0 437 30.4
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 1.0e-24 119.0 389 29.8
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 1.0e-24 119.0 255 34.1
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 6.6e-24 116.3 457 28.7
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 8.7e-24 115.9 555 28.3
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 1.5e-23 115.2 269 33.1
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 1.9e-23 114.8 281 34.5
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 5.6e-23 113.2 395 29.1
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 5.6e-23 113.2 517 26.5
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 7.3e-23 112.8 253 34.8
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 9.6e-23 112.5 309 31.4
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 9.6e-23 112.5 423 28.4
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 2.8e-22 110.9 494 29.1
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 3.6e-22 110.5 454 27.1
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 6.2e-22 109.8 281 32.4
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 1.8e-21 108.2 189 38.1
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 3.1e-21 107.5 410 31.2
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 3.1e-21 107.5 513 27.1
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.5e-20 105.1 505 28.7
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 2.6e-20 104.4 296 29.1
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 2.6e-20 104.4 463 25.3
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 3.4e-20 104.0 335 32.8
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 4.4e-20 103.6 224 33.9
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 9.9e-20 102.4 421 26.6
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.3e-19 102.1 497 28.8
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.3e-19 102.1 175 33.7
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 1.1e-18 99.0 466 26.8
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.4e-18 98.6 448 27.9
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 1.9e-18 98.2 162 41.4
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 3.2e-18 97.4 267 31.1
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 4.2e-18 97.1 119 40.3
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 1.2e-17 95.5 231 32.9
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 1.6e-17 95.1 273 32.6
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 1.6e-17 95.1 355 29.6
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.7e-17 94.4 399 27.8
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 2.7e-17 94.4 507 27.0
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 6.0e-17 93.2 261 29.9
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 7.8e-17 92.8 243 30.0
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.0e-16 92.4 255 32.9
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 1.3e-16 92.0 265 30.6
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 5.1e-16 90.1 120 39.2
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 6.6e-16 89.7 256 30.5
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 6.6e-16 89.7 164 33.5
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 1.1e-15 89.0 258 30.2
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 1.5e-15 88.6 263 30.4
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 1.5e-15 88.6 204 31.9
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.5e-15 88.6 272 29.4
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.5e-15 87.8 521 26.5
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 4.3e-15 87.0 108 39.8
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 5.6e-15 86.7 273 34.4
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 2.1e-14 84.7 127 37.8
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 3.6e-14 84.0 325 30.2
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 4.8e-14 83.6 269 30.1
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 6.2e-14 83.2 502 25.9
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 6.2e-14 83.2 331 28.1
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 1.1e-13 82.4 268 29.1
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 1.1e-13 82.4 268 29.1
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 1.1e-13 82.4 174 35.6
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 2.4e-13 81.3 265 30.2
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 2.4e-13 81.3 285 29.5
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 4.0e-13 80.5 376 25.5
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 4.0e-13 80.5 140 35.7
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 9.0e-13 79.3 264 29.9
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.5e-12 78.6 154 30.5
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 2.0e-12 78.2 264 29.2
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 2.6e-12 77.8 361 26.0
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 3.4e-12 77.4 145 31.7
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 4.5e-12 77.0 332 28.3
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 4.5e-12 77.0 498 27.5
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 4.5e-12 77.0 511 26.0
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 9.9e-12 75.9 169 32.0
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 2.2e-11 74.7 255 29.8
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 4.9e-11 73.6 259 29.3
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 6.4e-11 73.2 418 27.3
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 1.4e-10 72.0 321 26.8
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 1.4e-10 72.0 115 35.7
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 2.4e-10 71.2 109 38.5
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 7.1e-10 69.7 165 30.9
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.6e-09 68.6 152 30.9
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.6e-09 68.6 152 30.9
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.7e-09 67.8 60 51.7
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 7.9e-09 66.2 487 23.8
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 1.3e-08 65.5 229 35.4
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.3e-08 65.5 133 29.3
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 1.8e-08 65.1 504 24.8
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.3e-08 64.7 270 25.9
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 5.1e-08 63.5 94 37.2
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 1.9e-07 61.6 112 33.0
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 2.5e-07 61.2 313 31.0
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 3.3e-07 60.8 177 29.4
Cre15.g640800 Chlamydomonas reinhardtii HOM05D003739 ORTHO05D003996 2.8e-06 57.8 70 35.7


User provided reference genes

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