Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0678 Fragaria x ananassa HOM05D004226 ORTHO05D004842 4.5e-87 324.7 182 100.0
FvH4_2g17810 Fragaria vesca HOM05D004226 ORTHO05D004842 1.0e-86 323.6 182 99.5
FAN15G3314 Fragaria x ananassa HOM05D004226 ORTHO05D004842 1.3e-81 306.6 167 95.8
FAN27G2858 Fragaria x ananassa HOM05D004226 ORTHO05D004842 3.1e-80 302.0 167 95.2
FAN27G3147 Fragaria x ananassa HOM05D004226 ORTHO05D004842 3.1e-80 302.0 167 95.2
RcHm_v2.0_Chr6g0282841 Rosa chinensis HOM05D004226 ORTHO05D004842 7.0e-64 247.7 168 81.0
Manes.12G054100 Manihot esculenta HOM05D004226 ORTHO05D004842 4.6e-23 112.1 154 44.2
Gohir.A11G142500 Gossypium hirsutum HOM05D004226 ORTHO05D004842 3.9e-22 109.0 155 47.1
Gohir.D11G148800 Gossypium hirsutum HOM05D004226 ORTHO05D004842 5.1e-22 108.6 155 47.1
Gorai.007G159600 Gossypium raimondii HOM05D004226 ORTHO05D004842 6.6e-22 108.2 156 46.8
Dinv28812 Davidia involucrata HOM05D004226 ORTHO05D004842 4.3e-21 105.5 167 44.3
Duzib138G1045 Durio zibethinus HOM05D004226 ORTHO05D004842 4.3e-21 105.5 155 45.8
Actinidia23795 Actinidia chinensis HOM05D004226 ORTHO05D004842 2.8e-20 102.8 153 45.8
Lalb_Chr01g0021991 Lupinus albus HOM05D004226 ORTHO05D004842 2.8e-20 102.8 156 44.9
Haze_03501 Corylus avellana HOM05D004226 ORTHO05D004842 8.1e-20 101.3 155 45.2
Glyma.18G152900 Glycine max HOM05D004226 ORTHO05D004842 1.1e-19 100.9 155 44.5
TAR362G0792 Trochodendron aralioides HOM05D004226 ORTHO05D004842 1.4e-19 100.5 152 43.4
Dinv10439 Davidia involucrata HOM05D004226 ORTHO05D004842 1.8e-19 100.1 166 42.8
vmacro02815 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 1.8e-19 100.1 163 46.6
Potri.002G251200 Populus trichocarpa HOM05D004226 ORTHO05D004842 2.4e-19 99.8 158 44.9
Eucgr.H00726 Eucalyptus grandis HOM05D004226 ORTHO05D004842 3.1e-19 99.4 167 42.5
Cfa010569 Carpinus fangiana HOM05D004226 ORTHO05D004842 5.3e-19 98.6 155 45.2
VMungo1383G2422 Vigna mungo HOM05D004226 ORTHO05D004842 5.3e-19 98.6 157 43.9
Phvul.008G136900 Phaseolus vulgaris HOM05D004226 ORTHO05D004842 6.9e-19 98.2 155 43.9
Cpa.g.sc8.73 Carica papaya HOM05D004226 ORTHO05D004842 9.0e-19 97.8 152 42.1
Lalb_Chr03g0041091 Lupinus albus HOM05D004226 ORTHO05D004842 1.2e-18 97.4 156 44.2
CDE05G1161 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 1.5e-18 97.1 157 41.4
Prupe.8G190400 Prunus persica HOM05D004226 ORTHO05D004842 1.5e-18 97.1 171 39.8
ClCG05G015470 Citrullus lanatus HOM05D004226 ORTHO05D004842 2.0e-18 96.7 155 40.6
Duzib133G0243 Durio zibethinus HOM05D004226 ORTHO05D004842 2.6e-18 96.3 158 44.3
Thecc.01G211100 Theobroma cacao HOM05D004226 ORTHO05D004842 2.6e-18 96.3 155 43.9
Lsat_1_v5_gn_8_98041 Lactuca sativa HOM05D004226 ORTHO05D004842 4.5e-18 95.5 157 44.6
QL09p046251 Quercus lobata HOM05D004226 ORTHO05D004842 4.5e-18 95.5 173 41.6
THA.LOC104802646 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 4.5e-18 95.5 156 43.6
Actinidia30018 Actinidia chinensis HOM05D004226 ORTHO05D004842 5.8e-18 95.1 152 44.7
Cc01_g16140 Coffea canephora HOM05D004226 ORTHO05D004842 5.8e-18 95.1 165 41.2
Oeu057834.2 Olea europaea HOM05D000039 ORTHO05D005440 5.8e-18 95.1 150 46.0
Lj1g0015941 Lotus japonicus HOM05D004226 ORTHO05D004842 7.6e-18 94.7 159 43.4
PGR083G1064 Punica granatum HOM05D004226 ORTHO05D004842 9.9e-18 94.4 157 41.4
CiPaw.13G055300 Carya illinoinensis HOM05D004226 ORTHO05D004842 1.3e-17 94.0 155 43.2
DCAR_018624 Daucus carota HOM05D004226 ORTHO05D004842 1.3e-17 94.0 155 40.6
HanXRQChr08g0231431 Helianthus annuus HOM05D004226 ORTHO05D004842 1.7e-17 93.6 127 47.2
Actinidia34543 Actinidia chinensis HOM05D004226 ORTHO05D004842 2.2e-17 93.2 153 43.1
THA.LOC104822467 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 2.2e-17 93.2 174 37.9
ECA236G1737 Erigeron canadensis HOM05D004226 ORTHO05D004842 2.9e-17 92.8 152 42.8
Migut.N00664 Erythranthe guttata HOM05D004226 ORTHO05D004842 2.9e-17 92.8 127 45.7
Rhsim01G0248500 Rhododendron simsii HOM05D004226 ORTHO05D004842 2.9e-17 92.8 152 38.8
MSTRG.18494 Avicennia marina HOM05D004226 ORTHO05D004842 3.8e-17 92.4 153 41.2
Sed0006210 Sechium edule HOM05D004226 ORTHO05D004842 3.8e-17 92.4 164 40.2
TWI36G1598 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 3.8e-17 92.4 170 40.0
HPP92_024259 Vanilla planifolia HOM05D004226 ORTHO05D004842 3.8e-17 92.4 166 39.8
MELO3C003732.2 Cucumis melo HOM05D004226 ORTHO05D004842 4.9e-17 92.0 155 39.4
Hma1.2p1_0781F.1_g216920 Hydrangea macrophylla HOM05D004226 ORTHO05D004842 6.4e-17 91.7 165 43.6
Glyma.08G344200 Glycine max HOM05D004226 ORTHO05D004842 8.4e-17 91.3 154 41.6
Nitab4.5_0000038g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 8.4e-17 91.3 153 43.8
DCAR_012646 Daucus carota HOM05D004226 ORTHO05D004842 1.1e-16 90.9 170 38.2
Lj2A1117T18 Lonicera japonica HOM05D004226 ORTHO05D004842 1.1e-16 90.9 153 41.2
Nitab4.5_0009151g0020 Nicotiana tabacum HOM05D004226 ORTHO05D004842 1.4e-16 90.5 153 43.1
TPR.G26804 Trifolium pratense HOM05D004226 ORTHO05D004842 1.4e-16 90.5 154 42.9
Aqoxy2G03959 Aquilegia oxysepala HOM05D004226 ORTHO05D004842 1.9e-16 90.1 155 38.1
EL10Ac5g10626 Beta vulgaris HOM05D004226 ORTHO05D004842 2.4e-16 89.7 151 41.1
TWI18G1341 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 2.4e-16 89.7 168 41.1
TAR365G1191 Trochodendron aralioides HOM05D004226 ORTHO05D004842 2.4e-16 89.7 158 42.4
Ah.11g051030 Amaranthus hybridus HOM05D004226 ORTHO05D004842 3.2e-16 89.4 152 43.4
Hund02794 Selenicereus undatus HOM05D004226 ORTHO05D004842 3.2e-16 89.4 154 42.9
SGA_v2.0_scaffold8G04494 Striga asiatica HOM05D004226 ORTHO05D004842 3.2e-16 89.4 154 44.2
CANSAT01G0104 Cannabis sativa HOM05D004226 ORTHO05D004842 4.2e-16 89.0 159 43.4
Oeu003656.1 Olea europaea HOM05D004226 ORTHO05D004842 4.2e-16 89.0 153 45.1
Nitab4.5_0002311g0050 Nicotiana tabacum HOM05D004226 ORTHO05D004842 9.3e-16 87.8 161 41.6
Psat3g151000 Pisum sativum HOM05D004226 ORTHO05D004842 9.3e-16 87.8 155 41.3
Rhsim13G0052600 Rhododendron simsii HOM05D004226 ORTHO05D004842 9.3e-16 87.8 151 43.7
Hund09468 Selenicereus undatus HOM05D004226 ORTHO05D004842 9.3e-16 87.8 156 41.7
Aa31sc186G10 Aethionema arabicum HOM05D004226 ORTHO05D004842 1.6e-15 87.0 167 40.1
ECA247G2547 Erigeron canadensis HOM05D004226 ORTHO05D004842 2.1e-15 86.7 125 42.4
SGA_v2.0_scaffold624G53238 Striga asiatica HOM05D004226 ORTHO05D004842 2.1e-15 86.7 152 41.4
Lj3g0001126 Lotus japonicus HOM05D004226 ORTHO05D004842 2.7e-15 86.3 142 40.1
PGSC0003DMG400020653 Solanum tuberosum HOM05D004226 ORTHO05D004842 3.5e-15 85.9 157 43.3
TAR633G1997 Trochodendron aralioides HOM05D004226 ORTHO05D004842 3.5e-15 85.9 152 43.4
Migut.D00732 Erythranthe guttata HOM05D004226 ORTHO05D004842 4.6e-15 85.5 127 43.3
Solyc06g007610.2 Solanum lycopersicum HOM05D004226 ORTHO05D004842 4.6e-15 85.5 158 43.7
Sopen06g002500 Solanum pennellii HOM05D004226 ORTHO05D004842 4.6e-15 85.5 158 43.7
vmacro14692 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 4.6e-15 85.5 155 38.1
Peaxi162Scf00372g00004 Petunia axillaris HOM05D004226 ORTHO05D004842 6.0e-15 85.1 161 42.9
Sabra02G0191000 Salix brachista HOM05D004226 ORTHO05D004842 6.0e-15 85.1 179 38.0
AUR62008122 Chenopodium quinoa HOM05D004226 ORTHO05D004842 1.0e-14 84.3 159 42.8
HanXRQChr09g0257641 Helianthus annuus HOM05D004226 ORTHO05D004842 1.0e-14 84.3 151 38.4
HanXRQChr16g0507911 Helianthus annuus HOM05D004226 ORTHO05D004842 1.0e-14 84.3 171 39.2
DCAR_004767 Daucus carota HOM05D004226 ORTHO05D004842 1.3e-14 84.0 157 40.1
Ciclev10016998m.g Citrus clementina HOM05D004226 ORTHO05D004842 1.8e-14 83.6 156 42.3
CsaV3_3G046080 Cucumis sativus L. HOM05D004226 ORTHO05D004842 1.8e-14 83.6 155 38.1
SEGI_00481 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 1.8e-14 83.6 172 38.4
AUR62028700 Chenopodium quinoa HOM05D004226 ORTHO05D004842 2.3e-14 83.2 151 43.0
PGSC0003DMG400027348 Solanum tuberosum HOM05D004226 ORTHO05D004842 2.3e-14 83.2 156 38.5
Sc17g0001670 Simmondsia chinensis HOM05D004226 ORTHO05D004842 3.0e-14 82.8 127 45.7
Nn1g08255 Nelumbo nucifera HOM05D004226 ORTHO05D004842 3.9e-14 82.4 174 37.9
CAN.G181.39 Capsicum annuum HOM05D004226 ORTHO05D004842 5.1e-14 82.0 142 39.4
COL.COLO4_26572 Corchorus olitorius HOM05D004226 ORTHO05D004842 5.1e-14 82.0 152 42.1
MD05G1159600 Malus domestica HOM05D004226 ORTHO05D004842 8.7e-14 81.3 163 39.3
Nitab4.5_0002167g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 8.7e-14 81.3 166 39.8
Duzib168G0485 Durio zibethinus HOM05D004226 ORTHO05D004842 1.1e-13 80.9 125 43.2
Medtr7g052690 Medicago truncatula HOM05D004226 ORTHO05D004842 1.1e-13 80.9 153 39.9
ATR0686G035 Amborella trichopoda HOM05D004226 ORTHO05D004842 1.9e-13 80.1 161 41.0
SGA_v2.0_scaffold29G12070 Striga asiatica HOM05D004226 ORTHO05D004842 1.9e-13 80.1 180 35.0
CSS0019192 Camellia sinensis var. sinensis HOM05D004226 ORTHO05D004842 2.5e-13 79.7 115 43.5
MSTRG.21303 Avicennia marina HOM05D004226 ORTHO05D004842 4.3e-13 79.0 152 37.5
MD10G1152100 Malus domestica HOM05D004226 ORTHO05D004842 5.6e-13 78.6 159 34.6
Mapoly0001s0501 Marchantia polymorpha HOM05D004226 ORTHO05D004842 5.6e-13 78.6 161 36.0
Migut.D00735 Erythranthe guttata HOM05D004226 ORTHO05D004842 7.4e-13 78.2 126 42.9
C09p04850 Brassica napus HOM05D004226 ORTHO05D004842 9.6e-13 77.8 174 37.9
Lj3g0009756 Lotus japonicus HOM05D004226 ORTHO05D004842 1.6e-12 77.0 157 38.2
BolC9t53412H Brassica oleracea HOM05D004226 ORTHO05D004842 2.1e-12 76.6 172 36.6
BcaC04g23773 Brassica carinata HOM05D004226 ORTHO05D004842 4.8e-12 75.5 155 37.4
Sp2g18850 Schrenkiella parvula HOM05D004226 ORTHO05D004842 6.2e-12 75.1 155 37.4
PSO017G4362 Papaver somniferum HOM05D004226 ORTHO05D004842 8.1e-12 74.7 164 37.2
PSO675G4654 Papaver somniferum HOM05D004226 ORTHO05D004842 1.1e-11 74.3 164 36.0
Sopen11g003480 Solanum pennellii HOM05D004226 ORTHO05D004842 1.4e-11 73.9 156 39.7
THA.LOC104818997 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 1.8e-11 73.6 159 36.5
Thhalv10005050m.g Eutrema salsugineum HOM05D004226 ORTHO05D004842 4.0e-11 72.4 153 39.9
CDE05G0628 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 5.3e-11 72.0 115 41.7
A09p04540 Brassica napus HOM05D004226 ORTHO05D004842 9.0e-11 71.2 157 38.2
BolC7t44438H Brassica oleracea HOM05D004226 ORTHO05D004842 9.0e-11 71.2 154 37.7
BraA09t36089Z Brassica rapa HOM05D004226 ORTHO05D004842 9.0e-11 71.2 157 38.2
SMO146G0354 Selaginella moellendorffii HOM05D004226 ORTHO05D004842 9.0e-11 71.2 125 37.6
BcaC03g17654 Brassica carinata HOM05D004226 ORTHO05D004842 1.2e-10 70.9 144 39.6
BcaC06g30793 Brassica carinata HOM05D004226 ORTHO05D004842 1.2e-10 70.9 154 37.0
BolC2t11714H Brassica oleracea HOM05D004226 ORTHO05D004842 2.0e-10 70.1 144 38.9
A06p39150 Brassica napus HOM05D004226 ORTHO05D004842 2.6e-10 69.7 151 37.1
C02p56560 Brassica napus HOM05D004226 ORTHO05D004842 2.6e-10 69.7 144 38.9
BraA06t26830Z Brassica rapa HOM05D004226 ORTHO05D004842 3.4e-10 69.3 151 37.1
BraA02t08736Z Brassica rapa HOM05D004226 ORTHO05D004842 4.5e-10 68.9 152 34.2
Ca_07469_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 9.9e-10 67.8 90 50.0
Ca_30573_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 9.9e-10 67.8 90 50.0
CARHR183600 Cardamine hirsuta HOM05D004226 ORTHO05D004842 1.7e-09 67.0 154 37.0
SHI10249 Sapria himalayana HOM05D004226 ORTHO05D004842 1.7e-09 67.0 123 36.6
C07p39180 Brassica napus HOM05D004226 ORTHO05D004842 2.9e-09 66.2 156 37.2
AT5G48480 Arabidopsis thaliana HOM05D004226 ORTHO05D004842 4.9e-09 65.5 162 35.2
BcaB07g30025 Brassica carinata HOM05D004226 ORTHO05D004842 8.4e-09 64.7 152 36.8
Duzib170G0075 Durio zibethinus HOM05D004226 ORTHO05D004842 8.4e-09 64.7 127 37.8
Gohir.D07G094900 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.4e-08 63.9 138 37.7
Gorai.001G102200 Gossypium raimondii HOM05D004226 ORTHO05D004842 1.4e-08 63.9 138 37.7
Carub.0008s0806 Capsella rubella HOM05D004226 ORTHO05D004842 3.2e-08 62.8 162 37.7
AL8G21330 Arabidopsis lyrata HOM05D004226 ORTHO05D004842 7.1e-08 61.6 174 33.9
Duzib138G0271 Durio zibethinus HOM05D004226 ORTHO05D004842 7.1e-08 61.6 127 39.4
Gohir.A07G090200 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.6e-07 60.5 139 36.7
Duzib205G0826 Durio zibethinus HOM05D004226 ORTHO05D004842 2.7e-07 59.7 153 34.0
Duzib211G0475 Durio zibethinus HOM05D004226 ORTHO05D004842 2.7e-07 59.7 127 37.8
Glyma.14G148600 Glycine max HOM05D004226 ORTHO05D004842 4.6e-07 58.9 71 50.7


User provided reference genes

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