Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.0e-238 829.7 840 100.0
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 1.8e-199 700.3 795 87.9
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.2e-188 662.9 795 93.1
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.1e-183 647.9 795 92.8
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.5e-180 637.5 815 88.5
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.7e-112 411.4 813 70.6
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 8.2e-67 259.6 240 70.4
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 1.4e-66 258.8 201 72.1
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.0e-61 242.7 205 68.3
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 5.2e-61 240.4 204 68.6
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 6.3e-59 233.4 201 67.2
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 2.7e-57 228.0 240 57.1
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.7e-56 225.3 208 61.5
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 2.9e-56 224.6 208 62.5
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 3.8e-56 224.2 208 64.9
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 8.5e-56 223.0 212 60.4
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 1.1e-55 222.6 210 60.5
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 1.6e-54 218.8 253 56.5
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 4.7e-54 217.2 212 59.4
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 4.7e-54 217.2 206 61.2
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 8.0e-54 216.5 238 56.3
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 8.0e-54 216.5 238 55.9
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 1.8e-53 215.3 211 58.3
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 3.0e-53 214.5 208 58.2
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 2.0e-52 211.8 207 60.4
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 2.6e-52 211.5 238 57.6
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 2.6e-52 211.5 239 59.0
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 3.4e-52 211.1 202 62.4
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 1.3e-51 209.1 208 56.7
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 4.8e-51 207.2 238 53.8
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.1e-50 206.1 161 73.3
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 1.1e-50 206.1 249 56.6
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 2.4e-50 204.9 210 56.7
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 3.1e-50 204.5 206 58.3
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 5.4e-50 203.8 205 56.1
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.7e-49 201.4 211 56.9
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.7e-49 201.4 205 57.6
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 2.3e-48 198.4 167 64.7
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 2.9e-48 198.0 211 58.3
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 1.1e-47 196.1 209 56.9
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 2.5e-47 194.9 209 57.9
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 4.2e-47 194.1 203 59.6
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 7.2e-47 193.4 281 45.2
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 1.2e-46 192.6 208 56.7
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 2.1e-46 191.8 208 58.2
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 2.8e-46 191.4 206 58.3
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 3.6e-46 191.0 206 57.8
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 3.6e-46 191.0 206 57.8
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 3.6e-46 191.0 206 57.8
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 3.6e-46 191.0 212 55.2
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 8.0e-46 189.9 239 53.1
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 1.4e-45 189.1 211 53.6
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 1.8e-45 188.7 211 56.9
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 1.8e-45 188.7 205 56.1
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.0e-45 188.0 190 60.5
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 5.2e-45 187.2 149 67.1
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 5.2e-45 187.2 184 61.4
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 1.2e-44 186.0 203 57.1
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 1.2e-44 186.0 241 52.3
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.5e-44 185.7 208 55.3
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.5e-44 185.7 195 57.4
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 2.0e-44 185.3 203 56.2
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 2.6e-44 184.9 205 53.7
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 2.6e-44 184.9 208 54.8
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 2.6e-44 184.9 205 53.7
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 3.4e-44 184.5 151 68.9
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 4.4e-44 184.1 191 62.8
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 9.8e-44 183.0 218 53.2
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 9.8e-44 183.0 218 53.2
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.3e-43 182.6 149 64.4
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 2.8e-43 181.4 151 66.9
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 2.8e-43 181.4 204 52.9
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.1e-42 179.5 178 59.0
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.1e-42 179.5 205 52.7
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 1.4e-42 179.1 241 48.1
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 1.4e-42 179.1 205 52.2
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.4e-42 179.1 180 58.3
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 1.4e-42 179.1 222 52.3
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.2e-41 176.0 206 51.9
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.0e-41 175.3 206 51.9
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.7e-41 174.9 206 51.0
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 1.3e-40 172.6 205 52.2
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 1.7e-40 172.2 207 51.2
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 5.0e-40 170.6 174 56.9
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 6.6e-40 170.2 144 63.9
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 6.6e-40 170.2 156 59.6
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.5e-39 168.3 204 53.4
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 4.3e-39 167.5 120 75.0
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 9.5e-39 166.4 156 60.3
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 2.1e-38 165.2 191 49.7
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 6.1e-38 163.7 133 66.2
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 8.0e-38 163.3 144 61.8
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 8.0e-38 163.3 155 58.7
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.3e-37 161.8 148 59.5
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.3e-37 161.8 160 60.6
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.0e-37 161.4 148 58.8
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 2.0e-36 158.7 120 68.3
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 3.4e-36 157.9 102 76.5
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 7.5e-36 156.8 240 44.6
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 1.3e-35 156.0 102 75.5
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.7e-35 155.6 203 48.3
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 3.7e-35 154.5 102 74.5
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 6.4e-35 153.7 176 51.1
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 8.3e-35 153.3 103 75.7
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 8.3e-35 153.3 114 67.5
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 1.1e-34 152.9 90 85.6
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 1.4e-34 152.5 178 53.4
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 5.4e-34 150.6 134 62.7
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 7.0e-34 150.2 106 72.6
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 1.2e-33 149.4 116 68.1
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 5.0e-32 144.1 203 50.2
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 1.2e-30 139.4 180 46.7
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 1.2e-30 139.4 138 58.7
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 4.7e-30 137.5 146 50.7
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 1.1e-29 136.3 221 44.3
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 1.7e-27 129.0 89 71.9
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 2.9e-27 128.3 95 68.4
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 3.7e-27 127.9 117 61.5
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 6.4e-27 127.1 144 54.9
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.2e-25 122.9 126 55.6
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 2.0e-25 122.1 193 43.5
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.7e-25 121.7 111 59.5
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 4.6e-25 120.9 142 50.7
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.3e-24 119.4 109 56.0
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 1.7e-24 119.0 80 75.0
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 5.0e-24 117.5 209 43.1
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.9e-23 115.5 198 43.4
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 8.1e-22 110.2 105 57.1
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.4e-21 109.4 108 52.8
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.8e-21 109.0 138 48.6
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 6.8e-21 107.1 144 44.4
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 6.8e-21 107.1 144 44.4
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 6.8e-21 107.1 109 55.0
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 8.9e-21 106.7 104 58.7
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 1.2e-20 106.3 104 55.8
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 2.6e-20 105.1 101 56.4
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.4e-20 104.8 104 58.7
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 5.8e-20 104.0 190 53.2
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.7e-19 102.4 105 53.3
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 3.7e-19 101.3 104 53.8
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 6.4e-19 100.5 107 54.2
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.1e-18 99.8 166 42.8
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.4e-18 98.6 151 45.0
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 2.4e-18 98.6 102 52.0
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 3.2e-18 98.2 100 57.0
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 9.2e-18 96.7 158 43.0
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 6.0e-17 94.0 100 54.0
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 6.6e-16 90.5 114 50.0
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 1.1e-15 89.7 112 47.3
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.9e-15 89.0 138 43.5
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 7.3e-15 87.0 105 41.9
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 4.7e-14 84.3 108 49.1
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.1e-13 83.2 52 75.0
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 1.5e-12 79.3 167 36.5
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 5.8e-12 77.4 63 68.3
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 1.3e-11 76.3 174 32.2
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 4.9e-11 74.3 97 42.3
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 1.1e-10 73.2 50 72.0
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 3.2e-10 71.6 84 52.4
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.6e-09 69.3 151 35.8
MD15G1110900 Malus domestica HOM05D004041 ORTHO05D004564 4.6e-09 67.8 112 45.5
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.1e-07 63.2 67 49.3
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 5.6e-07 60.8 68 51.5


User provided reference genes

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