Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 7.3e-62 240.4 118 100.0
FvH4_2g11050 Fragaria vesca HOM05D007025 ORTHO05D008862 1.0e-47 193.4 95 97.9
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 1.0e-23 113.6 57 94.7
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 1.0e-23 113.6 57 94.7
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 3.9e-23 111.7 57 93.0
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.9e-23 111.7 57 93.0
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.9e-23 111.7 57 93.0
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.9e-23 111.7 57 93.0
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 2.5e-22 109.0 57 91.2
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 3.8e-18 95.1 63 74.6
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 3.2e-17 92.0 57 77.2
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 9.3e-17 90.5 62 67.7
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 1.2e-16 90.1 57 75.4
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 1.6e-16 89.7 64 68.8
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 1.6e-16 89.7 58 74.1
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 2.1e-16 89.4 63 69.8
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 2.1e-16 89.4 58 74.1
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 3.5e-16 88.6 63 71.4
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 3.5e-16 88.6 64 67.2
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 4.6e-16 88.2 63 69.8
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 4.6e-16 88.2 63 74.6
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 6.0e-16 87.8 58 74.1
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 6.0e-16 87.8 58 74.1
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 6.0e-16 87.8 63 74.6
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 7.9e-16 87.4 63 69.8
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 7.9e-16 87.4 63 69.8
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.0e-15 87.0 63 68.3
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 1.0e-15 87.0 63 68.3
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 1.0e-15 87.0 63 73.0
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 1.3e-15 86.7 63 66.7
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 1.8e-15 86.3 63 73.0
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 1.8e-15 86.3 63 73.0
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 1.8e-15 86.3 63 73.0
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 1.8e-15 86.3 57 71.9
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 2.3e-15 85.9 63 68.3
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 3.0e-15 85.5 63 66.7
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 3.0e-15 85.5 89 51.7
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 3.9e-15 85.1 63 69.8
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 3.9e-15 85.1 63 63.5
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 6.7e-15 84.3 62 66.1
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 6.7e-15 84.3 63 66.7
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 6.7e-15 84.3 63 65.1
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 6.7e-15 84.3 63 68.3
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 8.7e-15 84.0 63 65.1
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 8.7e-15 84.0 63 69.8
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 8.7e-15 84.0 94 50.0
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 1.1e-14 83.6 58 69.0
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 1.1e-14 83.6 62 64.5
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 1.1e-14 83.6 62 64.5
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 1.5e-14 83.2 63 65.1
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 1.5e-14 83.2 58 67.2
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 1.9e-14 82.8 58 65.5
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 2.5e-14 82.4 63 66.7
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 2.5e-14 82.4 58 70.7
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 4.3e-14 81.6 74 58.1
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 5.6e-14 81.3 63 65.1
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 5.6e-14 81.3 63 66.7
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 7.4e-14 80.9 63 63.5
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 7.4e-14 80.9 63 63.5
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 7.4e-14 80.9 57 63.2
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 9.6e-14 80.5 58 65.5
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 9.6e-14 80.5 63 68.3
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 1.3e-13 80.1 59 66.1
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 1.3e-13 80.1 57 63.2
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 1.3e-13 80.1 57 63.2
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 1.3e-13 80.1 57 63.2
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 1.3e-13 80.1 57 63.2
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 1.3e-13 80.1 57 68.4
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 1.6e-13 79.7 63 63.5
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 1.6e-13 79.7 64 62.5
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 2.8e-13 79.0 58 63.8
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 2.8e-13 79.0 57 61.4
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 3.7e-13 78.6 57 61.4
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 3.7e-13 78.6 63 61.9
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 4.8e-13 78.2 58 65.5
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 6.2e-13 77.8 58 62.1
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 1.4e-12 76.6 64 59.4
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 1.4e-12 76.6 63 66.7
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 1.4e-12 76.6 64 59.4
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 1.4e-12 76.6 83 49.4
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 1.8e-12 76.3 63 58.7
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 3.1e-12 75.5 58 62.1
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 4.0e-12 75.1 64 62.5
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 4.0e-12 75.1 58 62.1
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 5.3e-12 74.7 58 63.8
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 9.0e-12 73.9 63 58.7
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 1.2e-11 73.6 58 62.1
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 2.0e-11 72.8 58 62.1
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 2.0e-11 72.8 59 64.4
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 2.6e-11 72.4 63 60.3
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 7.6e-11 70.9 63 58.7
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 4.9e-10 68.2 58 58.6
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 8.4e-10 67.4 58 58.6
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 1.1e-09 67.0 63 54.0
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 2.4e-09 65.9 62 54.8
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 2.4e-09 65.9 62 54.8
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 2.4e-09 65.9 57 49.1
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 3.2e-09 65.5 42 78.6
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 3.2e-09 65.5 42 78.6
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 3.2e-09 65.5 56 51.8
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 5.5e-09 64.7 55 56.4
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 2.1e-08 62.8 75 46.7
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 1.0e-07 60.5 71 52.1
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 5.1e-07 58.2 55 47.3
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 6.7e-07 57.8 66 45.5
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 1.1e-06 57.0 55 49.1
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 1.1e-06 57.0 55 47.3
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 1.9e-06 56.2 41 63.4
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 2.5e-06 55.8 112 35.7


User provided reference genes

Program Settings