Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 2.8e-103 378.6 191 100.0
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 2.8e-103 378.6 191 100.0
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 5.8e-101 370.9 191 98.4
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.1e-99 366.7 191 97.4
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 9.2e-99 363.6 191 96.9
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 1.7e-89 332.8 191 90.1
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 7.6e-77 290.8 191 77.5
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 1.0e-52 210.7 194 61.3
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 3.7e-47 192.2 195 59.0
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 8.2e-47 191.0 195 57.9
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 4.1e-46 188.7 194 55.7
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.5e-45 186.8 195 57.4
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 1.0e-44 184.1 194 56.7
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 6.5e-44 181.4 192 56.2
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.4e-43 180.3 192 55.7
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 2.5e-43 179.5 190 56.8
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 2.5e-43 179.5 195 58.5
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 2.1e-42 176.4 235 48.9
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 4.6e-42 175.3 195 53.8
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.9e-42 174.5 189 54.0
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 9.7e-40 167.5 195 52.3
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 1.6e-39 166.8 192 52.1
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 4.5e-37 158.7 192 52.6
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 5.0e-36 155.2 192 50.5
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 8.5e-36 154.5 192 49.5
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.1e-35 154.1 195 51.3
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 1.4e-35 153.7 169 55.0
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.5e-35 151.8 195 51.3
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.2e-35 151.4 195 50.3
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 7.2e-35 151.4 191 48.7
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 1.6e-34 150.2 196 51.0
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.6e-34 149.1 195 49.7
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 3.6e-34 149.1 201 48.8
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.6e-34 148.7 195 49.7
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 4.6e-34 148.7 204 51.0
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.1e-34 148.3 195 49.2
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.0e-33 147.5 195 49.2
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.4e-33 147.1 195 49.2
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 1.8e-33 146.7 199 49.7
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.8e-33 146.7 195 49.2
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 1.1e-32 144.1 195 48.2
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.1e-32 144.1 199 45.7
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.5e-32 143.7 200 46.0
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 2.6e-32 142.9 195 47.7
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 2.6e-32 142.9 191 48.7
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 3.3e-32 142.5 194 48.5
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 9.7e-32 141.0 189 49.7
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 1.7e-31 140.2 220 47.7
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 2.2e-31 139.8 185 47.0
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.8e-31 139.4 194 46.9
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 3.7e-31 139.0 195 46.2
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.8e-31 138.7 191 45.5
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 4.8e-31 138.7 148 52.7
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 4.8e-31 138.7 194 49.0
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 1.1e-30 137.5 196 45.9
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 1.1e-30 137.5 205 47.8
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.8e-30 136.7 185 45.9
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 2.4e-30 136.3 193 45.1
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.1e-30 136.0 195 47.2
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 3.1e-30 136.0 197 47.2
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 4.1e-30 135.6 198 45.5
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 5.3e-30 135.2 181 47.5
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 4.5e-29 132.1 182 45.1
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 5.9e-29 131.7 153 52.9
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 7.7e-29 131.3 196 43.9
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 7.7e-29 131.3 177 46.3
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 7.7e-29 131.3 193 44.0
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 7.7e-29 131.3 193 44.0
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 2.9e-28 129.4 87 81.6
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 1.9e-27 126.7 192 45.3
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 4.2e-27 125.6 195 48.7
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 4.2e-27 125.6 191 43.5
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 9.4e-27 124.4 147 49.7
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 9.4e-27 124.4 197 45.2
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 1.2e-26 124.0 198 48.0
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 1.6e-26 123.6 185 44.9
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 6.1e-26 121.7 198 43.4
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 7.9e-26 121.3 193 42.0
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 1.8e-25 120.2 189 42.3
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 8.8e-25 117.9 189 43.4
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 1.1e-24 117.5 197 43.7
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 2.0e-24 116.7 229 39.7
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 4.4e-24 115.5 186 40.9
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 5.7e-24 115.2 193 40.9
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 7.4e-24 114.8 203 44.3
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 7.4e-24 114.8 197 44.2
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.7e-23 113.6 200 42.5
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.7e-23 113.6 200 42.5
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.2e-23 113.2 145 48.3
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.2e-23 113.2 145 48.3
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 2.8e-23 112.8 169 43.2
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 3.7e-23 112.5 201 42.3
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 4.8e-23 112.1 190 39.5
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 6.3e-23 111.7 190 39.5
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 8.2e-23 111.3 149 51.7
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 1.1e-22 110.9 190 39.5
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 1.1e-22 110.9 190 39.5
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 1.1e-22 110.9 185 42.7
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 1.1e-22 110.9 199 39.7
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 7.0e-22 108.2 166 39.2
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 2.0e-21 106.7 192 38.0
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.6e-21 106.3 198 40.4
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 2.6e-21 106.3 191 37.7
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 2.6e-21 106.3 140 47.9
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 2.6e-21 106.3 191 38.7
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 2.6e-21 106.3 187 38.5
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 3.5e-21 105.9 167 41.9
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 5.9e-21 105.1 193 41.5
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 7.7e-21 104.8 204 38.7
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.0e-20 104.4 152 46.1
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.7e-20 103.6 193 39.9
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 2.2e-20 103.2 199 37.7
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 2.9e-20 102.8 196 37.8
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 5.0e-20 102.1 86 62.8
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 6.5e-20 101.7 190 38.4
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 1.9e-19 100.1 196 42.3
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 2.5e-19 99.8 202 37.6
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 7.2e-19 98.2 194 36.6
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 7.2e-19 98.2 155 43.9
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 7.2e-19 98.2 193 37.8
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 1.6e-18 97.1 184 37.5
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 1.6e-18 97.1 86 58.1
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 1.6e-18 97.1 86 58.1
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 2.1e-18 96.7 192 38.0
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 2.7e-18 96.3 86 58.1
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 2.7e-18 96.3 195 36.9
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 2.7e-18 96.3 195 36.9
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 3.6e-18 95.9 167 40.7
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 3.6e-18 95.9 196 38.8
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 1.4e-17 94.0 166 38.6
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 1.4e-17 94.0 189 37.0
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 1.4e-17 94.0 191 36.1
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 2.3e-17 93.2 190 35.8
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 2.3e-17 93.2 156 42.3
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 3.0e-17 92.8 148 41.9
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 4.0e-17 92.4 148 41.9
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 6.7e-17 91.7 83 57.8
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 2.6e-16 89.7 190 35.8
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 3.3e-16 89.4 192 33.9
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 3.3e-16 89.4 192 33.9
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 4.4e-16 89.0 198 36.9
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 2.8e-15 86.3 192 34.4
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 4.8e-15 85.5 145 40.7
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 1.1e-14 84.3 189 32.8
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 4.1e-14 82.4 189 32.8
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 5.3e-14 82.0 188 37.2
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 9.1e-14 81.3 84 51.2
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 1.2e-13 80.9 201 35.3
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 3.5e-13 79.3 198 35.4
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 3.5e-13 79.3 198 35.4
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 3.5e-13 79.3 191 37.7
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 5.9e-13 78.6 198 35.4
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 1.7e-12 77.0 170 35.9
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.8e-12 75.9 45 77.8
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.8e-12 75.9 45 77.8
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 5.0e-12 75.5 169 34.3
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 1.9e-11 73.6 144 36.1
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 1.9e-11 73.6 144 36.1
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 2.5e-11 73.2 195 35.4
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 2.5e-11 73.2 191 32.5
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 3.2e-11 72.8 182 36.3
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 5.5e-11 72.0 199 33.2
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 1.2e-10 70.9 98 41.8
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 1.2e-10 70.9 98 41.8
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 2.7e-10 69.7 146 34.2
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 6.1e-10 68.6 145 35.2
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 8.0e-10 68.2 144 34.7
ATR0037G046 Amborella trichopoda HOM05D004036 ORTHO05D004576 2.0e-08 63.5 201 31.8
Actinidia15710 Actinidia chinensis HOM05D004036 ORTHO05D004576 9.8e-08 61.2 112 40.2
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 9.8e-08 61.2 84 40.5
VMungo1309G1209 Vigna mungo HOM05D033454 ORTHO05D050263 1.4e-06 57.4 72 45.8
Dinv40932 Davidia involucrata HOM05D000001 ORTHO05D004044 5.4e-06 55.5 66 47.0
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 7.0e-06 55.1 150 30.7
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 7.0e-06 55.1 45 53.3
unitig_85.g27159 Utricularia gibba HOM05D050274 ORTHO05D004576 7.0e-06 55.1 165 29.7
Actinidia01324 Actinidia chinensis HOM05D000001 ORTHO05D004044 9.1e-06 54.7 60 53.3


User provided reference genes

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