Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.0e-231 805.4 427 100.0
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.4e-200 701.0 429 90.7
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 1.1e-192 676.8 365 98.9
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.1e-191 672.5 365 98.4
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 2.9e-185 652.1 365 94.5
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 8.5e-161 570.9 366 83.6
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 1.6e-159 566.6 367 82.3
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 8.2e-148 527.7 352 81.8
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 1.8e-147 526.6 364 78.3
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 1.8e-147 526.6 364 78.3
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 6.5e-145 518.1 364 76.9
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 8.0e-143 511.1 368 78.3
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 2.3e-142 509.6 364 77.2
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 3.0e-142 509.2 364 78.0
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 1.3e-140 503.8 363 76.3
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.2e-140 503.1 371 76.8
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 2.8e-140 502.7 371 76.0
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 1.8e-139 500.0 373 75.1
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 2.7e-138 496.1 372 74.5
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 4.5e-138 495.4 364 76.1
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.2e-137 493.0 372 73.4
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 5.0e-137 491.9 367 75.2
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.1e-136 490.7 361 75.6
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 2.5e-136 489.6 367 75.2
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 4.2e-136 488.8 376 71.8
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 9.4e-136 487.6 369 74.3
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.6e-135 486.9 343 77.0
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 8.0e-135 484.6 373 73.2
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 1.4e-134 483.8 351 75.5
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 1.8e-134 483.4 364 74.2
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 2.3e-134 483.0 363 74.4
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 4.0e-134 482.3 368 74.2
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 6.8e-134 481.5 373 74.0
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 6.8e-134 481.5 329 78.4
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 8.8e-134 481.1 342 76.9
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 1.2e-133 480.7 351 76.6
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 1.5e-133 480.3 373 73.7
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 1.5e-133 480.3 358 75.4
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 2.6e-133 479.6 340 76.5
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 4.4e-133 478.8 373 73.2
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 7.5e-133 478.0 373 73.7
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 9.8e-133 477.6 370 73.0
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 9.8e-133 477.6 373 72.9
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 9.8e-133 477.6 371 73.6
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 9.8e-133 477.6 370 73.0
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 2.8e-132 476.1 372 72.8
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 2.8e-132 476.1 370 73.0
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 2.8e-132 476.1 370 73.0
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 2.8e-132 476.1 358 74.9
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 3.7e-132 475.7 341 75.4
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 3.7e-132 475.7 364 72.8
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 1.1e-131 474.2 362 74.0
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 1.4e-131 473.8 358 74.6
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.4e-131 473.8 344 75.6
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 2.4e-131 473.0 369 71.3
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 3.1e-131 472.6 343 75.8
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 4.1e-131 472.2 358 74.3
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 4.1e-131 472.2 341 76.2
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 4.1e-131 472.2 339 75.5
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 7.0e-131 471.5 359 74.9
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 7.0e-131 471.5 350 76.0
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 9.1e-131 471.1 358 74.9
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 9.1e-131 471.1 358 74.9
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 1.2e-130 470.7 352 75.6
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.2e-130 470.7 349 75.6
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 1.6e-130 470.3 352 75.6
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 1.6e-130 470.3 367 71.1
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 2.7e-130 469.5 343 75.2
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 3.5e-130 469.2 377 71.6
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 4.5e-130 468.8 351 73.5
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 7.7e-130 468.0 352 75.0
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 5.0e-129 465.3 371 73.0
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 1.5e-128 463.8 376 69.7
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 3.3e-128 462.6 326 76.4
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 4.2e-128 462.2 379 69.1
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 4.2e-128 462.2 323 76.2
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 5.5e-128 461.8 336 75.3
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 1.2e-127 460.7 329 76.9
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 1.6e-127 460.3 322 77.3
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 2.8e-127 459.5 354 72.3
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 3.6e-127 459.1 320 78.8
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 6.1e-127 458.4 354 72.0
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 8.0e-127 458.0 342 74.6
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 8.0e-127 458.0 371 70.1
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 1.0e-126 457.6 353 71.4
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 1.0e-126 457.6 353 72.5
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 1.4e-126 457.2 376 66.8
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 1.8e-126 456.8 336 73.5
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 2.3e-126 456.4 369 68.6
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 3.0e-126 456.1 347 72.0
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 5.2e-126 455.3 370 70.5
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 8.9e-126 454.5 347 71.8
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.5e-125 453.8 375 69.6
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 2.0e-125 453.4 337 75.1
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 5.7e-125 451.8 376 62.8
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 5.7e-125 451.8 370 69.2
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 7.5e-125 451.4 361 69.3
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 7.5e-125 451.4 341 71.6
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 9.8e-125 451.1 373 67.6
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 9.8e-125 451.1 345 73.9
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 1.7e-124 450.3 349 70.5
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 8.3e-124 448.0 349 70.2
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 5.4e-123 445.3 346 69.4
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 5.4e-123 445.3 342 70.8
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 9.2e-123 444.5 332 72.6
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 1.6e-122 443.7 336 71.4
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 2.7e-122 443.0 354 71.8
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 6.6e-121 438.3 367 69.8
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 5.2e-118 428.7 363 68.0
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 5.2e-118 428.7 363 66.1
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 8.9e-118 427.9 368 67.7
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 2.2e-116 423.3 363 67.5
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 8.3e-116 421.4 363 66.4
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 3.3e-112 409.5 322 69.9
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 4.7e-111 405.6 370 61.6
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 1.8e-110 403.7 328 68.0
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 2.7e-106 389.8 316 72.8
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 3.3e-104 382.9 369 63.4
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 4.0e-102 375.9 298 72.1
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 4.4e-101 372.5 362 62.7
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 7.1e-99 365.2 334 62.0
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 2.7e-98 363.2 330 63.3
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 4.3e-96 355.9 336 59.5
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 2.9e-92 343.2 242 79.3
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 8.4e-92 341.7 289 68.5
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.2e-90 337.8 348 57.5
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 1.6e-90 337.4 242 77.7
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 2.5e-88 330.1 350 55.1
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.8e-86 323.9 316 58.9
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 3.4e-85 319.7 297 57.9
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 2.7e-82 310.1 203 76.4
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 6.0e-82 308.9 335 56.4
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.1e-75 288.1 322 54.3
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.4e-75 287.7 323 56.3
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.7e-66 256.9 233 60.5
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 5.1e-57 226.1 209 59.8
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 3.9e-49 199.9 231 51.1
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 1.6e-42 177.9 146 65.1
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 2.1e-42 177.6 128 73.4
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 7.4e-40 169.1 161 56.5
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 2.9e-36 157.1 103 74.8
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 2.5e-35 154.1 164 56.1
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 3.7e-31 140.2 96 71.9
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.8e-30 137.9 90 72.2
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 6.5e-28 129.4 95 67.4
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 2.1e-26 124.4 78 80.8
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 3.6e-26 123.6 128 52.3
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 4.4e-24 116.7 120 57.5
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 4.8e-23 113.2 95 65.3
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 8.3e-23 112.5 124 55.6
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 3.5e-21 107.1 284 32.4
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 5.5e-19 99.8 108 49.1
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 1.6e-18 98.2 66 75.8
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 8.0e-18 95.9 87 56.3
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.6e-13 81.6 52 78.8
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.7e-13 80.9 52 78.8
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 3.5e-13 80.5 346 27.7
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.3e-12 78.6 52 78.8
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.3e-12 78.6 52 75.0
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 1.7e-12 78.2 140 40.7
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 2.3e-12 77.8 178 35.4
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.9e-12 77.4 52 75.0
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.9e-11 74.7 52 75.0
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.8e-10 70.9 76 53.9
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.8e-10 70.9 76 53.9
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 6.1e-10 69.7 63 65.1
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 1.0e-09 68.9 42 81.0
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 2.3e-09 67.8 56 60.7
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.0e-08 64.7 52 59.6
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 1.1e-06 58.9 37 78.4
FAN02G1819 Fragaria x ananassa HOM05D024693 ORTHO05D004814 1.8e-06 58.2 84 45.2
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 2.4e-06 57.8 41 70.7
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 5.4e-06 56.6 43 65.1
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 5.4e-06 56.6 64 48.4
Ca_29028_v3 Cicer arietinum L. HOM05D020748 ORTHO05D028602 7.0e-06 56.2 136 29.4


User provided reference genes

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