Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0263 Fragaria x ananassa HOM05D006114 ORTHO05D007609 2.5e-224 781.9 449 100.0
FvH4_2g14200 Fragaria vesca HOM05D006114 ORTHO05D007609 8.3e-167 590.9 282 99.6
FAN15G0766 Fragaria x ananassa HOM05D006114 ORTHO05D007609 1.6e-165 586.6 282 98.6
RcHm_v2.0_Chr6g0276341 Rosa chinensis HOM05D006114 ORTHO05D007609 8.7e-148 527.7 280 89.3
MD05G1021300 Malus domestica HOM05D006114 ORTHO05D007609 1.4e-134 483.8 283 80.6
MD10G1022100 Malus domestica HOM05D006114 ORTHO05D007609 1.6e-133 480.3 283 79.9
Prupe.8G025000 Prunus persica HOM05D006114 ORTHO05D007609 2.1e-133 479.9 281 80.1
Cfa018335 Carpinus fangiana HOM05D006114 ORTHO05D007609 6.0e-133 478.4 284 78.2
Haze_17740 Corylus avellana HOM05D006114 ORTHO05D007609 3.0e-132 476.1 284 77.5
CANSAT25G1256 Cannabis sativa HOM05D006114 ORTHO05D007609 3.7e-130 469.2 282 78.4
CiPaw.16G014300 Carya illinoinensis HOM05D006114 ORTHO05D007609 2.6e-128 463.0 286 76.9
QL02p024207 Quercus lobata HOM05D006114 ORTHO05D007609 9.9e-128 461.1 282 77.7
TAR381G1603 Trochodendron aralioides HOM05D006114 ORTHO05D007609 9.3e-126 454.5 281 76.9
CSS0028797 Camellia sinensis var. sinensis HOM05D006114 ORTHO05D007609 1.0e-124 451.1 283 73.9
DCAR_010096 Daucus carota HOM05D006114 ORTHO05D007609 6.7e-124 448.4 281 76.2
Dinv41097 Davidia involucrata HOM05D006114 ORTHO05D007609 5.6e-123 445.3 282 75.2
Sed0024386 Sechium edule HOM05D006114 ORTHO05D007609 1.6e-122 443.7 280 75.4
Hma1.2p1_0616F.1_g190010 Hydrangea macrophylla HOM05D006114 ORTHO05D007609 4.8e-122 442.2 282 75.9
TAR625G1556 Trochodendron aralioides HOM05D006114 ORTHO05D007609 1.2e-120 437.6 282 73.8
Cpa.g.sc21.182 Carica papaya HOM05D006114 ORTHO05D007609 2.6e-120 436.4 284 74.6
Eucgr.F02716 Eucalyptus grandis HOM05D006114 ORTHO05D007609 3.4e-120 436.0 288 72.6
Sabra02G0054600 Salix brachista HOM05D006114 ORTHO05D007609 3.4e-120 436.0 284 72.9
Nn1g06119 Nelumbo nucifera HOM05D006114 ORTHO05D007609 2.9e-119 433.0 281 73.7
Actinidia15143 Actinidia chinensis HOM05D006114 ORTHO05D007609 4.9e-119 432.2 285 72.6
PSO675G2834 Papaver somniferum HOM05D006114 ORTHO05D007609 8.4e-119 431.4 283 71.0
Lj7A371T45 Lonicera japonica HOM05D006114 ORTHO05D007609 1.1e-118 431.0 282 73.4
Potri.002G069900 Populus trichocarpa HOM05D006114 ORTHO05D007609 1.4e-118 430.6 284 72.2
Lalb_Chr19g0130321 Lupinus albus HOM05D006114 ORTHO05D007609 1.9e-118 430.3 300 71.0
Lj2g0010896 Lotus japonicus HOM05D006114 ORTHO05D007609 9.3e-118 427.9 295 70.5
Ca_27292_v3 Cicer arietinum L. HOM05D006114 ORTHO05D007609 1.2e-117 427.6 299 69.9
Lsat_1_v5_gn_1_8460 Lactuca sativa HOM05D006114 ORTHO05D007609 3.5e-117 426.0 284 73.2
PSO541G3056 Papaver somniferum HOM05D006114 ORTHO05D007609 6.0e-117 425.2 283 70.0
Aqoxy5G02132 Aquilegia oxysepala HOM05D006114 ORTHO05D007609 8.7e-116 421.4 281 72.2
COL.COLO4_24672 Corchorus olitorius HOM05D006114 ORTHO05D007609 8.7e-116 421.4 290 70.3
Ciclev10001576m.g Citrus clementina HOM05D006114 ORTHO05D007609 1.1e-115 421.0 286 71.0
Manes.02G177800 Manihot esculenta HOM05D006114 ORTHO05D007609 1.1e-115 421.0 305 67.5
Potri.005G190400 Populus trichocarpa HOM05D006114 ORTHO05D007609 1.1e-115 421.0 287 70.7
TWI34G0188 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 3.3e-115 419.5 284 69.4
PGR042G1057 Punica granatum HOM05D006114 ORTHO05D007609 7.4e-115 418.3 289 71.3
PGR122G0006 Punica granatum HOM05D006114 ORTHO05D007609 7.4e-115 418.3 289 71.3
AT1G76920 Arabidopsis thaliana HOM05D006114 ORTHO05D007609 1.6e-114 417.2 284 71.1
Carub.0002s2378 Capsella rubella HOM05D006114 ORTHO05D007609 2.8e-114 416.4 284 71.1
SpUn0346_0010 Schrenkiella parvula HOM05D006114 ORTHO05D007609 2.8e-114 416.4 284 71.1
AL2G37050 Arabidopsis lyrata HOM05D006114 ORTHO05D007609 4.8e-114 415.6 284 70.8
THA.LOC104812044 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 8.2e-114 414.8 284 70.1
C06p31720 Brassica napus HOM05D006114 ORTHO05D007609 1.8e-113 413.7 284 71.1
BolC6t38302H Brassica oleracea HOM05D006114 ORTHO05D007609 1.8e-113 413.7 284 71.1
BraA07t30466Z Brassica rapa HOM05D006114 ORTHO05D007609 1.8e-113 413.7 284 71.1
Ah.08g215970 Amaranthus hybridus HOM05D006114 ORTHO05D007609 2.4e-113 413.3 293 69.6
TWI32G1226 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 2.4e-113 413.3 284 70.1
EL10Ac7g15790 Beta vulgaris HOM05D006114 ORTHO05D007609 3.1e-113 412.9 283 70.0
BcaC08g45501 Brassica carinata HOM05D006114 ORTHO05D007609 3.1e-113 412.9 284 71.1
Thhalv10019824m.g Eutrema salsugineum HOM05D006114 ORTHO05D007609 3.1e-113 412.9 284 70.4
BcaB05g25019 Brassica carinata HOM05D006114 ORTHO05D007609 4.1e-113 412.5 284 71.1
A07p28250 Brassica napus HOM05D006114 ORTHO05D007609 4.1e-113 412.5 284 70.8
BcaB02g07084 Brassica carinata HOM05D006114 ORTHO05D007609 5.3e-113 412.1 285 70.5
Gohir.D05G271900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 6.9e-113 411.8 288 69.1
Gorai.009G284900 Gossypium raimondii HOM05D006114 ORTHO05D007609 6.9e-113 411.8 288 69.1
Gohir.A05G269900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 1.5e-112 410.6 288 68.8
Duzib116G0820 Durio zibethinus HOM05D006114 ORTHO05D007609 2.6e-112 409.8 288 68.4
THA.LOC104813707 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 2.6e-112 409.8 284 68.7
AUR62039242 Chenopodium quinoa HOM05D006114 ORTHO05D007609 3.4e-112 409.5 295 68.1
HanXRQChr02g0039921 Helianthus annuus HOM05D006114 ORTHO05D007609 3.4e-112 409.5 282 69.5
Thecc.08G149100 Theobroma cacao HOM05D006114 ORTHO05D007609 4.5e-112 409.1 290 68.6
Solyc04g071130.1 Solanum lycopersicum HOM05D006114 ORTHO05D007609 5.9e-112 408.7 288 67.0
Sopen04g027070 Solanum pennellii HOM05D006114 ORTHO05D007609 5.9e-112 408.7 288 67.0
PGSC0003DMG400000797 Solanum tuberosum HOM05D006114 ORTHO05D007609 5.9e-112 408.7 288 67.0
Medtr6g034935 Medicago truncatula HOM05D006114 ORTHO05D007609 1.7e-111 407.1 303 67.0
Hund26709 Selenicereus undatus HOM05D006114 ORTHO05D000105 1.7e-111 407.1 293 68.3
Duzib041G0274 Durio zibethinus HOM05D006114 ORTHO05D007609 2.9e-111 406.4 288 69.1
FAN27G1342 Fragaria x ananassa HOM05D006114 ORTHO05D007609 2.9e-111 406.4 198 97.0
CAN.G175.3 Capsicum annuum HOM05D006114 ORTHO05D007609 8.5e-111 404.8 289 66.4
Aa31LG4G6950 Aethionema arabicum HOM05D006114 ORTHO05D007609 1.9e-110 403.7 284 69.4
Nitab4.5_0000032g0440 Nicotiana tabacum HOM05D006114 ORTHO05D007609 2.5e-110 403.3 299 64.5
Atru.chr13.2189 Acer truncatum HOM05D006114 ORTHO05D007609 3.2e-110 402.9 284 68.3
Nitab4.5_0006608g0010 Nicotiana tabacum HOM05D006114 ORTHO05D007609 3.2e-110 402.9 298 64.8
VMungo0464G2055 Vigna mungo HOM05D006114 ORTHO05D007609 1.2e-109 401.0 292 67.1
Sed0010814 Sechium edule HOM05D006114 ORTHO05D007609 1.4e-108 397.5 281 68.7
SalBow7G1400 Salvia bowleyana HOM05D006114 ORTHO05D007609 2.5e-107 393.3 289 64.0
Phvul.004G097500 Phaseolus vulgaris HOM05D006114 ORTHO05D007609 3.3e-107 392.9 293 65.2
Rhsim05G0182400 Rhododendron simsii HOM05D006114 ORTHO05D007609 3.3e-107 392.9 286 67.8
Oeu032982.1 Olea europaea HOM05D006114 ORTHO05D007609 2.2e-106 390.2 304 61.8
Cc10_g14550 Coffea canephora HOM05D006114 ORTHO05D007609 8.2e-106 388.3 295 65.4
MSTRG.1356 Avicennia marina HOM05D006114 ORTHO05D007609 2.0e-104 383.6 300 60.3
Peaxi162Scf00263g01414 Petunia axillaris HOM05D006114 ORTHO05D007609 4.2e-102 375.9 273 66.3
Glyma.02G083400 Glycine max HOM05D006114 ORTHO05D007609 7.2e-102 375.2 287 66.2
MSTRG.22368 Avicennia marina HOM05D006114 ORTHO05D007609 2.7e-101 373.2 300 61.0
Migut.C01010 Erythranthe guttata HOM05D006114 ORTHO05D007609 2.3e-100 370.2 304 58.9
ECA247G0840 Erigeron canadensis HOM05D006114 ORTHO05D007609 5.7e-99 365.5 240 74.2
unitig_749.g13920 Utricularia gibba HOM05D006114 ORTHO05D007609 2.2e-98 363.6 297 60.3
MBI17_g34067_MAGBIO Magnolia biondii HOM05D006114 ORTHO05D007609 9.7e-91 338.2 264 67.0
HPP92_009302 Vanilla planifolia HOM05D006114 ORTHO05D007609 1.8e-89 334.0 312 56.4
Medtr6g049050 Medicago truncatula HOM05D006114 ORTHO05D007609 3.8e-87 326.2 292 56.5
Lj7A371T46 Lonicera japonica HOM05D006114 ORTHO05D007609 1.9e-86 323.9 281 58.4
CARHR070420 Cardamine hirsuta HOM05D006114 ORTHO05D007609 1.0e-84 318.2 220 70.9
Zm00001eb434300 Zea mays HOM05D006114 ORTHO05D007609 7.0e-81 305.4 322 48.4
Zm00001eb076050 Zea mays HOM05D006114 ORTHO05D007609 3.5e-80 303.1 318 49.1
AUR62009796 Chenopodium quinoa HOM05D006114 ORTHO05D007609 3.6e-77 293.1 190 73.7
Psat0s3019g0080 Pisum sativum HOM05D006114 ORTHO05D007609 1.0e-76 291.6 205 70.2
Os04g0686700 Oryza sativa ssp. japonica HOM05D006114 ORTHO05D007609 5.7e-75 285.8 305 49.2
Migut.N03218 Erythranthe guttata HOM05D006114 ORTHO05D007609 2.6e-67 260.4 306 48.4
GSVIVG01034899001 Vitis vinifera HOM05D006114 ORTHO05D007609 9.2e-65 251.9 237 55.7
TPR.G36696 Trifolium pratense HOM05D006114 ORTHO05D007609 3.6e-61 240.0 151 74.8
FAN14G0378 Fragaria x ananassa HOM05D006114 ORTHO05D007609 1.0e-55 221.9 124 91.1
Oeu046020.2 Olea europaea HOM05D006114 ORTHO05D007609 1.6e-53 214.5 250 46.0
SGA_v2.0_scaffold48G17978 Striga asiatica HOM05D006114 ORTHO05D007609 3.7e-50 203.4 143 65.0
unitig_26.g9904 Utricularia gibba HOM05D006114 ORTHO05D007609 2.3e-47 194.1 179 54.2
SEGI_30218 Sequoiadendron giganteum HOM05D006114 ORTHO05D007609 8.6e-47 192.2 279 34.8
Zm00001eb268540 Zea mays HOM05D006114 ORTHO05D007609 2.2e-42 177.6 184 48.9
FvH4_3g14282 Fragaria vesca HOM05D006114 ORTHO05D007609 2.9e-42 177.2 90 95.6
ATR0772G199 Amborella trichopoda HOM05D006114 ORTHO05D007609 9.9e-35 152.1 199 45.2
AUR62039241 Chenopodium quinoa HOM05D006114 ORTHO05D007609 3.8e-34 150.2 199 45.2
unitig_26.g9903 Utricularia gibba HOM05D006114 ORTHO05D007609 2.4e-33 147.5 98 70.4
AUR62009795 Chenopodium quinoa HOM05D006114 ORTHO05D007609 2.1e-32 144.4 201 43.8
Zm00001eb182860 Zea mays HOM05D006114 ORTHO05D007609 2.4e-25 120.9 144 41.7
CDE08G0205 Ceratophyllum demersum HOM05D006114 ORTHO05D007609 7.1e-25 119.4 93 63.4
FvH4_6g34681 Fragaria vesca HOM05D006114 ORTHO05D007609 1.1e-22 112.1 60 91.7
Zm00001eb346130 Zea mays HOM05D003599 ORTHO05D004221 1.6e-21 108.2 93 54.8
Zm00001eb268570 Zea mays HOM05D006114 ORTHO05D007609 1.8e-20 104.8 129 43.4
Zm00001eb243390 Zea mays HOM05D006114 ORTHO05D007609 4.0e-20 103.6 95 52.6
FvH4_6g34680 Fragaria vesca HOM05D006114 ORTHO05D007609 6.4e-18 96.3 49 93.9
VMungo1383G2819 Vigna mungo HOM05D006114 ORTHO05D007609 8.4e-18 95.9 77 62.3
Zm00001eb080990 Zea mays HOM05D006114 ORTHO05D007609 9.3e-17 92.4 77 54.5
Zm00001eb268560 Zea mays HOM05D006114 ORTHO05D007609 7.9e-16 89.4 102 44.1
Zm00001eb080980 Zea mays HOM05D006114 ORTHO05D007609 3.0e-15 87.4 103 42.7
arahy.Tifrunner.gnm1.ann1.0BPN3L Arachis hypogaea HOM05D000034 ORTHO05D000037 3.7e-13 80.5 58 63.8
DCAR_025461 Daucus carota HOM05D004302 ORTHO05D004939 6.9e-12 76.3 280 27.9
SGA_v2.0_scaffold52G19058 Striga asiatica HOM05D004302 ORTHO05D004939 9.0e-12 75.9 283 27.2
GSVIVG01036521001 Vitis vinifera HOM05D004302 ORTHO05D004939 9.0e-12 75.9 280 28.2
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 2.6e-11 74.3 282 27.0
VMungo1383G1338 Vigna mungo HOM05D004302 ORTHO05D004939 2.6e-11 74.3 280 28.2
Glyma.08G253600 Glycine max HOM05D004302 ORTHO05D004939 3.4e-11 73.9 280 28.2
Phvul.008G025000 Phaseolus vulgaris HOM05D004302 ORTHO05D004939 4.5e-11 73.6 278 28.1
THA.LOC104820986 Tarenaya hassleriana HOM05D004302 ORTHO05D004939 4.5e-11 73.6 287 26.1
AagrBONN_evm.TU.Sc2ySwM_228.846 Anthoceros agrestis HOM05D002809 ORTHO05D004939 5.8e-11 73.2 279 26.5
Glyma.18G275900 Glycine max HOM05D004302 ORTHO05D004939 1.0e-10 72.4 280 28.2
CANSAT64G2833 Cannabis sativa HOM05D004302 ORTHO05D004939 2.2e-10 71.2 280 28.2
COL.COLO4_10644 Corchorus olitorius HOM05D004302 ORTHO05D004939 2.2e-10 71.2 280 27.1
MELO3C022055.2 Cucumis melo HOM05D004302 ORTHO05D004939 2.2e-10 71.2 273 26.4
CsaV3_5G038750 Cucumis sativus L. HOM05D004302 ORTHO05D004939 2.2e-10 71.2 273 26.4
ClCG11G005010 Citrullus lanatus HOM05D004302 ORTHO05D004939 2.9e-10 70.9 273 26.4
Psat3g208160 Pisum sativum HOM05D004302 ORTHO05D004939 2.9e-10 70.9 277 28.2
Duzib138G0864 Durio zibethinus HOM05D004302 ORTHO05D004939 4.9e-10 70.1 280 27.1
Medtr7g017400 Medicago truncatula HOM05D004302 ORTHO05D004939 6.5e-10 69.7 279 28.0
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 6.5e-10 69.7 295 24.4
SGA_v2.0_scaffold17G07917 Striga asiatica HOM05D006114 ORTHO05D007609 6.5e-10 69.7 96 43.8
Pp3c7_9930 Physcomitrium patens HOM05D002809 ORTHO05D004939 1.9e-09 68.2 279 25.4
RcHm_v2.0_Chr2g0119661 Rosa chinensis HOM05D006114 ORTHO05D007609 2.5e-09 67.8 38 78.9
Thecc.02G004000 Theobroma cacao HOM05D005977 ORTHO05D007546 3.5e-08 63.9 287 25.8
CSS0018053 Camellia sinensis var. sinensis HOM05D005977 ORTHO05D007546 4.6e-08 63.5 294 26.5
Migut.M02009 Erythranthe guttata HOM05D005977 ORTHO05D007546 1.0e-07 62.4 281 26.3
Ciclev10017846m.g Citrus clementina HOM05D005977 ORTHO05D007546 1.3e-07 62.0 296 26.0
Cc09_g05180 Coffea canephora HOM05D005977 ORTHO05D007546 1.3e-07 62.0 289 26.3
Duzib132G1078 Durio zibethinus HOM05D005977 ORTHO05D007546 3.0e-07 60.8 287 25.4
PGR102G0169 Punica granatum HOM05D007753 ORTHO05D009385 3.0e-07 60.8 295 25.8
SMO116G0047 Selaginella moellendorffii HOM05D002809 ORTHO05D004563 5.1e-07 60.1 279 25.1
SHI24793 Sapria himalayana HOM05D005977 ORTHO05D007546 6.7e-07 59.7 294 25.5
Potri.003G074100 Populus trichocarpa HOM05D005977 ORTHO05D007546 1.9e-06 58.2 288 25.0
Sc20g0003450 Simmondsia chinensis HOM05D006114 ORTHO05D007609 1.9e-06 58.2 44 68.2
Actinidia34692 Actinidia chinensis HOM05D005977 ORTHO05D007546 4.3e-06 57.0 303 26.4
Eucgr.E04314 Eucalyptus grandis HOM05D005977 ORTHO05D007546 5.7e-06 56.6 287 25.8
SMO296G0037 Selaginella moellendorffii HOM05D003005 ORTHO05D021244 5.7e-06 56.6 210 27.1
Pp3c22_15730 Physcomitrium patens HOM05D003005 ORTHO05D009385 7.4e-06 56.2 266 25.6
SMO174G0259 Selaginella moellendorffii HOM05D003005 ORTHO05D021244 7.4e-06 56.2 210 27.1


User provided reference genes

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