Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0129 Fragaria x ananassa HOM05D000647 ORTHO05D000485 2.6e-29 131.3 64 100.0
FvH4_2g20720 Fragaria vesca HOM05D000647 ORTHO05D000485 8.3e-28 126.3 64 98.4
FAN20G1045 Fragaria x ananassa HOM05D000647 ORTHO05D000485 2.0e-26 121.7 64 95.3
FAN27G1324 Fragaria x ananassa HOM05D000647 ORTHO05D000485 2.0e-26 121.7 64 95.3
FAN15G2101 Fragaria x ananassa HOM05D000647 ORTHO05D000485 1.1e-24 115.9 64 93.8
RcHm_v2.0_Chr6g0286901 Rosa chinensis HOM05D000647 ORTHO05D000485 1.5e-24 115.5 64 89.1
Prupe.8G216700 Prunus persica HOM05D000647 ORTHO05D000485 4.1e-19 97.4 65 75.4
Cfa019644 Carpinus fangiana HOM05D000647 ORTHO05D000485 1.7e-17 92.0 65 69.2
Haze_24690 Corylus avellana HOM05D000647 ORTHO05D000485 2.3e-17 91.7 65 69.2
QL09p041145 Quercus lobata HOM05D000647 ORTHO05D000485 2.3e-17 91.7 64 71.9
CiPaw.03G269800 Carya illinoinensis HOM05D000647 ORTHO05D000485 3.3e-16 87.8 64 68.8
MD00G1060800 Malus domestica HOM05D000647 ORTHO05D000485 7.3e-16 86.7 63 63.5
Oeu052071.1 Olea europaea HOM05D000647 ORTHO05D000485 3.4e-13 77.8 44 75.0
CANSAT01G0164 Cannabis sativa HOM05D000647 ORTHO05D000485 1.3e-12 75.9 67 59.7
ClCG07G001330 Citrullus lanatus HOM05D000647 ORTHO05D000485 1.3e-12 75.9 67 55.2
Aqoxy239s002 Aquilegia oxysepala HOM05D000647 ORTHO05D000485 4.9e-12 73.9 58 63.8
Aqoxy2G03738 Aquilegia oxysepala HOM05D000647 ORTHO05D000485 4.9e-12 73.9 58 63.8
Thecc.01G252100 Theobroma cacao HOM05D000647 ORTHO05D000485 6.4e-12 73.6 61 60.7
GSVIVG01028404001 Vitis vinifera HOM05D000647 ORTHO05D000485 6.4e-12 73.6 64 59.4
Duzib211G0046 Durio zibethinus HOM05D000647 ORTHO05D000485 8.3e-12 73.2 64 59.4
Potri.002G257700 Populus trichocarpa HOM05D000647 ORTHO05D000485 1.1e-11 72.8 64 54.7
MBI10_g30719_MAGBIO Magnolia biondii HOM05D000647 ORTHO05D000485 1.4e-11 72.4 53 62.3
MBI10_g44040_MAGBIO Magnolia biondii HOM05D000647 ORTHO05D000485 1.4e-11 72.4 53 62.3
Atru.chr5.1816 Acer truncatum HOM05D000647 ORTHO05D000485 1.9e-11 72.0 55 61.8
Manes.12G035700 Manihot esculenta HOM05D000647 ORTHO05D000485 1.9e-11 72.0 64 53.1
C08p00890 Brassica napus HOM05D000647 ORTHO05D000485 2.4e-11 71.6 75 54.7
COL.COLO4_10586 Corchorus olitorius HOM05D000647 ORTHO05D000485 2.4e-11 71.6 65 60.0
vmacro14804 Vaccinium macrocarpon HOM05D000647 ORTHO05D000485 2.4e-11 71.6 70 58.6
Sed0024157 Sechium edule HOM05D000647 ORTHO05D000485 4.1e-11 70.9 64 53.1
BcaC07g36935 Brassica carinata HOM05D000647 ORTHO05D000485 5.4e-11 70.5 73 56.2
BcaNung05491 Brassica carinata HOM05D000647 ORTHO05D000485 5.4e-11 70.5 73 56.2
Thhalv10008462m.g Eutrema salsugineum HOM05D000647 ORTHO05D000485 7.0e-11 70.1 67 59.7
Sabra02G0196100 Salix brachista HOM05D000647 ORTHO05D000485 7.0e-11 70.1 64 54.7
unitig_736.g22487 Utricularia gibba HOM05D000647 ORTHO05D000485 7.0e-11 70.1 65 52.3
AL1G13650 Arabidopsis lyrata HOM05D000647 ORTHO05D000485 1.2e-10 69.3 75 54.7
A08p37120 Brassica napus HOM05D000647 ORTHO05D000485 1.2e-10 69.3 67 59.7
BolC8t46887H Brassica oleracea HOM05D000647 ORTHO05D000485 1.2e-10 69.3 75 53.3
BraA08t35611Z Brassica rapa HOM05D000647 ORTHO05D000485 1.2e-10 69.3 67 59.7
MSTRG.21468 Avicennia marina HOM05D000647 ORTHO05D000485 1.6e-10 68.9 60 55.0
Nitab4.5_0000845g0080 Nicotiana tabacum HOM05D000647 ORTHO05D000485 1.6e-10 68.9 64 56.2
Peaxi162Scf00415g00912 Petunia axillaris HOM05D000647 ORTHO05D000485 1.6e-10 68.9 65 60.0
Sabra10G0040900 Salix brachista HOM05D000647 ORTHO05D000485 1.6e-10 68.9 64 53.1
TWI12G1278 Tripterygium wilfordii HOM05D000647 ORTHO05D000485 1.6e-10 68.9 62 56.5
TAR362G0070 Trochodendron aralioides HOM05D000647 ORTHO05D000485 1.6e-10 68.9 63 54.0
Potri.010G066500 Populus trichocarpa HOM05D000647 ORTHO05D000485 2.0e-10 68.6 64 53.1
BraA09t42141Z Brassica rapa HOM05D000647 ORTHO05D000485 2.7e-10 68.2 75 53.3
Carub.0001s0320 Capsella rubella HOM05D000647 ORTHO05D000485 2.7e-10 68.2 68 61.8
Glyma.19G167600 Glycine max HOM05D000647 ORTHO05D000485 2.7e-10 68.2 82 47.6
HanXRQChr02g0059321 Helianthus annuus HOM05D000647 ORTHO05D000485 3.5e-10 67.8 59 50.8
Hma1.2p1_0112F.1_g054640 Hydrangea macrophylla HOM05D000647 ORTHO05D000485 3.5e-10 67.8 64 54.7
unitig_899.g14850 Utricularia gibba HOM05D000647 ORTHO05D000485 6.0e-10 67.0 65 49.2
Gohir.A07G150800 Gossypium hirsutum HOM05D000647 ORTHO05D000485 7.8e-10 66.6 61 57.4
Gohir.D07G157400 Gossypium hirsutum HOM05D000647 ORTHO05D000485 7.8e-10 66.6 61 57.4
Dinv29810 Davidia involucrata HOM05D000647 ORTHO05D000485 1.0e-09 66.2 63 54.0
Duzib138G0594 Durio zibethinus HOM05D000647 ORTHO05D000485 1.0e-09 66.2 64 56.2
Glyma.03G166500 Glycine max HOM05D000647 ORTHO05D000485 1.0e-09 66.2 83 44.6
Nn1g02937 Nelumbo nucifera HOM05D000647 ORTHO05D000485 1.0e-09 66.2 56 58.9
AT1G04040 Arabidopsis thaliana HOM05D000647 ORTHO05D000485 1.3e-09 65.9 75 53.3
Gorai.001G180400 Gossypium raimondii HOM05D000647 ORTHO05D000485 1.3e-09 65.9 61 55.7
Sp1g02880 Schrenkiella parvula HOM05D000647 ORTHO05D000485 1.3e-09 65.9 65 58.5
BcaC07g42214 Brassica carinata HOM05D000647 ORTHO05D000485 1.7e-09 65.5 70 55.7
BolC8t52777H Brassica oleracea HOM05D000647 ORTHO05D000485 2.3e-09 65.1 69 56.5
Cpa.g.sc87.5 Carica papaya HOM05D000647 ORTHO05D000485 2.3e-09 65.1 55 56.4
CANSAT78G0104 Cannabis sativa HOM05D000647 ORTHO05D000485 3.0e-09 64.7 59 49.2
Lj5g0024354 Lotus japonicus HOM05D000647 ORTHO05D000485 3.0e-09 64.7 64 50.0
CARHR003390 Cardamine hirsuta HOM05D000647 ORTHO05D000485 3.9e-09 64.3 75 50.7
Cc01_g17910 Coffea canephora HOM05D000647 ORTHO05D000485 3.9e-09 64.3 46 58.7
Medtr1g073610 Medicago truncatula HOM05D000647 ORTHO05D000485 3.9e-09 64.3 56 53.6
Rhsim04G0173100 Rhododendron simsii HOM05D000647 ORTHO05D000485 3.9e-09 64.3 65 49.2
arahy.Tifrunner.gnm1.ann1.7AQZ6X Arachis hypogaea HOM05D000647 ORTHO05D000485 5.0e-09 63.9 60 48.3
arahy.Tifrunner.gnm1.ann1.RZ4SVU Arachis hypogaea HOM05D000647 ORTHO05D000485 5.0e-09 63.9 60 48.3
BcaC07g42213 Brassica carinata HOM05D000647 ORTHO05D000485 5.0e-09 63.9 69 55.1
A09p68060 Brassica napus HOM05D000647 ORTHO05D000485 5.0e-09 63.9 68 57.4
C08p52500 Brassica napus HOM05D000647 ORTHO05D000485 5.0e-09 63.9 69 55.1
Ciclev10021795m.g Citrus clementina HOM05D000647 ORTHO05D000485 5.0e-09 63.9 57 59.6
Aa31LG1G20780 Aethionema arabicum HOM05D000647 ORTHO05D000485 8.6e-09 63.2 69 50.7
Eucgr.H02960 Eucalyptus grandis HOM05D000647 ORTHO05D000485 8.6e-09 63.2 60 48.3
Sed0004748 Sechium edule HOM05D000647 ORTHO05D000485 8.6e-09 63.2 67 50.7
Nitab4.5_0001051g0060 Nicotiana tabacum HOM05D000647 ORTHO05D000485 1.1e-08 62.8 61 49.2
Lsat_1_v5_gn_6_66480 Lactuca sativa HOM05D000647 ORTHO05D000485 1.5e-08 62.4 46 60.9
Lalb_Chr06g0169481 Lupinus albus HOM05D000647 ORTHO05D000485 1.5e-08 62.4 64 48.4
Phvul.001G164000 Phaseolus vulgaris HOM05D000647 ORTHO05D000485 1.5e-08 62.4 72 43.1
Rhsim01G0261100 Rhododendron simsii HOM05D000647 ORTHO05D000485 1.9e-08 62.0 51 56.9
SGA_v2.0_scaffold179G39581 Striga asiatica HOM05D000647 ORTHO05D000485 1.9e-08 62.0 45 60.0
VMungo1383G3309 Vigna mungo HOM05D000647 ORTHO05D000485 1.9e-08 62.0 81 43.2
CARHR179270 Cardamine hirsuta HOM05D000647 ORTHO05D000485 2.5e-08 61.6 72 47.2
TPR.G28841 Trifolium pratense HOM05D000647 ORTHO05D000485 2.5e-08 61.6 60 50.0
Sc13g0006180 Simmondsia chinensis HOM05D000647 ORTHO05D000485 3.3e-08 61.2 68 47.1
BcaC04g21875 Brassica carinata HOM05D000647 ORTHO05D000485 4.3e-08 60.8 76 47.4
C09p26270 Brassica napus HOM05D000647 ORTHO05D000485 4.3e-08 60.8 76 47.4
BolC9t55529H Brassica oleracea HOM05D000647 ORTHO05D000485 4.3e-08 60.8 76 47.4
CAN.G220.80 Capsicum annuum HOM05D000647 ORTHO05D000485 4.3e-08 60.8 57 47.4
Psat6g129920 Pisum sativum HOM05D000647 ORTHO05D000485 4.3e-08 60.8 61 54.1
Actinidia35813 Actinidia chinensis HOM05D000647 ORTHO05D000485 5.6e-08 60.5 46 56.5
MELO3C006383.2 Cucumis melo HOM05D000647 ORTHO05D000485 5.6e-08 60.5 62 51.6
Solyc09g090600.3 Solanum lycopersicum HOM05D000647 ORTHO05D000485 5.6e-08 60.5 57 50.9
PGSC0003DMG400017152 Solanum tuberosum HOM05D000647 ORTHO05D000485 5.6e-08 60.5 57 50.9
THA.LOC104801134 Tarenaya hassleriana HOM05D000647 ORTHO05D000485 5.6e-08 60.5 49 55.1
Lalb_Chr21g0312481 Lupinus albus HOM05D000647 ORTHO05D000485 7.3e-08 60.1 56 50.0
ATR0736G195 Amborella trichopoda HOM05D000647 ORTHO05D000485 9.5e-08 59.7 46 56.5
RcHm_v2.0_Chr4g0395141 Rosa chinensis HOM05D000647 ORTHO05D000485 9.5e-08 59.7 48 54.2
AL8G16060 Arabidopsis lyrata HOM05D000647 ORTHO05D000485 1.2e-07 59.3 76 47.4
Lj2C1144G7 Lonicera japonica HOM05D000647 ORTHO05D000485 1.6e-07 58.9 61 49.2
Nitab4.5_0014618g0010 Nicotiana tabacum HOM05D000647 ORTHO05D000485 1.6e-07 58.9 61 49.2
THA.LOC104815971 Tarenaya hassleriana HOM05D000647 ORTHO05D000485 1.6e-07 58.9 78 43.6
BraA09t37680Z Brassica rapa HOM05D000647 ORTHO05D000485 2.1e-07 58.5 76 46.1
Lj6g0016502 Lotus japonicus HOM05D000647 ORTHO05D000485 2.1e-07 58.5 64 50.0
Manes.15G045000 Manihot esculenta HOM05D000647 ORTHO05D000485 2.1e-07 58.5 55 49.1
Psat6g106120 Pisum sativum HOM05D000647 ORTHO05D000485 2.1e-07 58.5 54 53.7
TPR.G23997 Trifolium pratense HOM05D000647 ORTHO05D000485 2.1e-07 58.5 63 50.8
Thhalv10003258m.g Eutrema salsugineum HOM05D000647 ORTHO05D000485 2.8e-07 58.2 79 43.0
Lj3A649T62 Lonicera japonica HOM05D000647 ORTHO05D000485 2.8e-07 58.2 60 50.0
Glyma.20G085500 Glycine max HOM05D000647 ORTHO05D000485 3.6e-07 57.8 64 48.4
TWI09G0306 Tripterygium wilfordii HOM05D000647 ORTHO05D000485 4.7e-07 57.4 56 50.0
BcaC06g31661 Brassica carinata HOM05D000647 ORTHO05D000485 6.2e-07 57.0 76 44.7
BcaC06g34602 Brassica carinata HOM05D000647 ORTHO05D000485 6.2e-07 57.0 74 43.2
A06p47530 Brassica napus HOM05D000647 ORTHO05D000485 6.2e-07 57.0 74 45.9
C07p26640 Brassica napus HOM05D000647 ORTHO05D000485 6.2e-07 57.0 74 43.2
BolC7t43193H Brassica oleracea HOM05D000647 ORTHO05D000485 6.2e-07 57.0 74 43.2
BraA06t27622Z Brassica rapa HOM05D000647 ORTHO05D000485 6.2e-07 57.0 74 45.9
Medtr1g045120 Medicago truncatula HOM05D000647 ORTHO05D000485 6.2e-07 57.0 64 50.0
Phvul.007G270800 Phaseolus vulgaris HOM05D000647 ORTHO05D000485 6.2e-07 57.0 65 46.2
BcaB07g30981 Brassica carinata HOM05D000647 ORTHO05D000485 1.1e-06 56.2 76 44.7
CSS0015592 Camellia sinensis var. sinensis HOM05D000647 ORTHO05D000485 2.3e-06 55.1 78 41.0
Glyma.10G134700 Glycine max HOM05D000647 ORTHO05D000485 2.3e-06 55.1 64 45.3
Peaxi162Scf00033g03015 Petunia axillaris HOM05D000647 ORTHO05D000485 2.3e-06 55.1 60 48.3
AT5G44020 Arabidopsis thaliana HOM05D000647 ORTHO05D000485 3.1e-06 54.7 76 43.4
Carub.0008s0452 Capsella rubella HOM05D000647 ORTHO05D000485 3.1e-06 54.7 72 43.1
Actinidia09522 Actinidia chinensis HOM05D000647 ORTHO05D000485 4.0e-06 54.3 49 49.0
BcaC03g16624 Brassica carinata HOM05D000647 ORTHO05D000485 4.0e-06 54.3 77 45.5
C02p44590 Brassica napus HOM05D000647 ORTHO05D000485 4.0e-06 54.3 77 45.5
BolC2t10500H Brassica oleracea HOM05D000647 ORTHO05D000485 4.0e-06 54.3 77 45.5
VMungo0720G1984 Vigna mungo HOM05D000647 ORTHO05D000485 4.0e-06 54.3 65 44.6
Aa31LG5G3250 Aethionema arabicum HOM05D000647 ORTHO05D000485 6.8e-06 53.5 62 46.8
HPP92_020777 Vanilla planifolia HOM05D000647 ORTHO05D000485 6.8e-06 53.5 51 49.0
A02p28190 Brassica napus HOM05D000647 ORTHO05D000485 8.9e-06 53.1 77 44.2
Sp2g08860 Schrenkiella parvula HOM05D000647 ORTHO05D000485 8.9e-06 53.1 59 49.2


User provided reference genes

Program Settings