Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 3.8e-282 974.2 483 100.0
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 7.1e-281 969.9 483 99.2
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 4.6e-280 967.2 483 99.0
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.7e-279 965.3 483 99.0
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 4.3e-278 960.7 483 98.6
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 3.8e-274 947.6 483 97.3
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 6.7e-255 883.6 483 89.2
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 4.8e-253 877.5 484 89.5
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 3.2e-241 838.2 483 83.4
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 1.2e-240 836.3 483 84.1
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 2.7e-240 835.1 483 83.6
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 1.0e-239 833.2 483 84.7
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 6.7e-239 830.5 482 83.6
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 4.8e-237 824.3 483 83.9
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 4.1e-236 821.2 482 83.2
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 2.0e-235 818.9 482 82.4
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 4.5e-235 817.8 482 82.2
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 5.9e-235 817.4 483 82.8
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 5.9e-235 817.4 483 82.0
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 7.7e-235 817.0 483 82.4
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 1.7e-234 815.8 482 81.5
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 6.5e-234 813.9 483 82.4
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 1.2e-232 809.7 482 82.0
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 1.2e-232 809.7 483 82.8
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 1.6e-232 809.3 484 82.4
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 2.1e-232 808.9 482 82.6
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 8.0e-232 807.0 483 82.0
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 1.4e-231 806.2 483 82.8
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 1.5e-230 802.7 484 81.2
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 7.4e-230 800.4 489 79.8
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 1.3e-229 799.7 489 79.8
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 2.8e-229 798.5 484 81.2
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 6.3e-229 797.3 483 81.4
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 8.2e-229 797.0 484 80.8
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 9.1e-228 793.5 485 80.4
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 2.9e-226 788.5 483 80.3
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 2.9e-226 788.5 483 80.5
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 2.5e-225 785.4 483 80.7
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 7.2e-225 783.9 483 79.5
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 9.4e-225 783.5 483 79.9
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 9.4e-225 783.5 483 79.9
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 1.6e-224 782.7 514 75.7
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 4.7e-224 781.2 483 80.1
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 3.0e-223 778.5 483 79.9
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 5.2e-223 777.7 484 78.3
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 1.2e-222 776.5 483 79.9
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 1.5e-222 776.2 485 78.4
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 2.0e-222 775.8 485 78.4
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 2.6e-222 775.4 483 79.7
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 4.4e-222 774.6 484 78.7
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 7.5e-222 773.9 483 79.7
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 1.7e-221 772.7 484 79.3
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 3.7e-221 771.5 484 79.1
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 4.8e-221 771.2 483 79.1
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 4.8e-221 771.2 483 79.1
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 1.1e-220 770.0 481 79.6
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 3.1e-220 768.5 484 78.3
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 4.1e-220 768.1 483 78.9
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 7.0e-220 767.3 483 78.7
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 7.0e-220 767.3 481 79.0
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 7.0e-220 767.3 485 78.8
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.2e-219 766.5 483 78.5
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 1.6e-219 766.1 485 78.8
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.0e-219 765.8 485 78.8
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 4.5e-219 764.6 484 78.1
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 5.9e-219 764.2 488 78.9
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 7.7e-219 763.8 485 77.7
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 1.0e-218 763.5 483 77.4
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.7e-218 762.7 485 78.8
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 2.2e-218 762.3 483 78.9
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 2.9e-218 761.9 481 78.4
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 3.8e-218 761.5 483 78.1
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 5.0e-218 761.1 483 77.8
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 8.5e-218 760.4 486 78.2
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 1.1e-217 760.0 483 77.8
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 5.5e-217 757.7 484 79.3
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 8.0e-216 753.8 485 77.9
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 8.0e-216 753.8 482 77.2
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 1.4e-215 753.1 484 78.1
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 1.4e-215 753.1 484 77.5
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 6.8e-215 750.7 486 77.8
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 2.0e-214 749.2 484 77.9
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 7.5e-214 747.3 419 85.4
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 1.7e-213 746.1 483 77.6
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 1.8e-212 742.7 488 76.6
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 1.8e-212 742.7 488 76.6
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 2.4e-212 742.3 483 76.4
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 2.9e-210 735.3 485 77.1
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 5.0e-210 734.6 483 76.8
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 1.1e-209 733.4 393 88.5
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 1.5e-209 733.0 396 87.9
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 1.9e-209 732.6 396 87.9
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 2.5e-209 732.3 486 75.9
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 2.8e-208 728.8 483 76.2
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 6.1e-208 727.6 483 76.4
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 6.1e-208 727.6 484 76.0
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 3.0e-207 725.3 483 76.0
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 2.6e-206 722.2 393 87.3
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 1.0e-202 710.3 444 79.5
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 3.2e-196 688.7 428 77.1
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 2.5e-193 679.1 430 76.0
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 2.5e-193 679.1 482 69.9
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 1.8e-191 672.9 450 73.1
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 6.8e-191 671.0 389 80.5
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 5.8e-190 667.9 483 71.6
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 3.7e-189 665.2 448 75.0
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 1.9e-185 652.9 383 82.5
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 1.4e-175 620.2 401 72.8
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 3.3e-169 599.0 432 71.3
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 9.6e-169 597.4 389 69.7
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 2.9e-165 585.9 483 63.4
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 1.1e-164 583.9 397 66.5
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 1.1e-156 557.4 289 92.7
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 5.4e-156 555.1 289 93.1
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 3.8e-141 505.8 328 75.9
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 2.4e-135 486.5 341 71.3
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.9e-100 370.5 237 75.5
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.1e-95 354.8 271 67.5
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 9.8e-81 305.1 172 82.6
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 2.1e-62 244.2 130 87.7
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 3.9e-61 240.0 196 61.7
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 4.3e-60 236.5 135 85.9
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 5.8e-57 226.1 139 77.7
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 2.9e-48 197.2 140 73.6
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 1.5e-44 184.9 157 60.5
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 1.3e-37 161.8 94 86.2
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 3.2e-31 140.6 105 66.7
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 5.7e-12 76.6 59 61.0
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 3.1e-10 70.9 285 25.3
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 5.9e-09 66.6 151 29.8
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 4.2e-07 60.5 149 28.2
Zm00001eb098110 Zea mays HOM05D000776 ORTHO05D001624 4.2e-07 60.5 153 29.4
SEGI_37678 Sequoiadendron giganteum HOM05D000776 ORTHO05D001624 5.5e-07 60.1 154 28.6
Nn2g15146 Nelumbo nucifera HOM05D000776 ORTHO05D001624 1.6e-06 58.5 153 29.4
PSO170G4404 Papaver somniferum HOM05D000776 ORTHO05D001624 1.6e-06 58.5 152 28.3
PSO063G2869 Papaver somniferum HOM05D000776 ORTHO05D001624 2.1e-06 58.2 152 28.3
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 4.7e-06 57.0 158 27.2
SGA_v2.0_scaffold126G33852 Striga asiatica HOM05D000739 ORTHO05D001171 7.9e-06 56.2 309 22.3


User provided reference genes

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