Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 4.0e-204 714.5 360 100.0
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 3.7e-202 708.0 360 99.2
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.7e-202 708.0 360 99.2
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.7e-202 708.0 360 99.2
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 8.3e-202 706.8 360 98.9
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.9e-198 695.7 360 97.8
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 1.2e-179 633.3 361 88.6
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 4.1e-156 555.1 371 75.5
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 2.2e-149 532.7 372 73.4
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 1.0e-143 513.8 363 71.3
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 6.3e-141 504.6 368 70.4
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 1.2e-139 500.4 368 70.1
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 1.3e-138 496.9 368 69.6
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 9.4e-137 490.7 368 69.0
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 1.0e-135 487.3 363 68.3
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 1.1e-134 483.8 363 68.3
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 2.0e-134 483.0 363 69.7
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 2.4e-132 476.1 375 63.5
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 2.0e-131 473.0 366 64.2
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 1.5e-129 466.8 368 64.4
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 1.9e-129 466.5 370 63.8
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 9.4e-129 464.2 370 63.2
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 9.4e-129 464.2 367 65.4
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 1.6e-128 463.4 363 65.6
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 1.6e-128 463.4 366 62.8
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 2.1e-128 463.0 373 64.1
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 6.1e-128 461.5 355 68.5
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 1.0e-127 460.7 369 63.4
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 3.0e-127 459.1 376 62.5
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 6.8e-127 458.0 365 63.8
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 6.8e-127 458.0 368 64.7
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 8.8e-127 457.6 374 64.2
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 2.6e-126 456.1 373 63.0
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 3.4e-126 455.7 371 63.1
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 2.2e-125 453.0 369 63.1
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 2.8e-125 452.6 371 61.2
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 1.8e-124 449.9 370 63.0
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 2.4e-124 449.5 364 65.7
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 3.1e-124 449.1 366 63.4
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 2.7e-123 446.0 373 62.2
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 4.5e-123 445.3 375 61.6
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 1.7e-122 443.4 372 60.8
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 2.2e-122 443.0 373 62.2
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 2.2e-122 443.0 374 60.2
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 1.5e-121 440.3 378 58.7
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 3.2e-121 439.1 379 61.7
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 9.4e-121 437.6 365 62.5
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.2e-120 437.2 376 60.9
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.6e-120 436.8 376 60.9
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.7e-120 436.0 376 60.6
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 8.0e-120 434.5 371 62.5
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 1.0e-119 434.1 384 58.3
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 2.3e-119 433.0 372 59.9
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 4.0e-119 432.2 371 60.6
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 5.2e-119 431.8 371 60.4
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 6.8e-119 431.4 372 59.9
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 8.8e-119 431.0 373 59.5
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 3.4e-118 429.1 373 59.2
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 1.7e-117 426.8 372 59.1
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 2.2e-117 426.4 371 59.3
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 1.1e-116 424.1 372 57.8
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 1.4e-116 423.7 368 59.8
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.7e-115 419.5 374 57.8
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.3e-114 416.4 374 57.2
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 1.1e-113 414.1 368 58.2
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 2.5e-113 412.9 368 58.2
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 2.5e-113 412.9 368 58.2
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.5e-113 412.9 361 60.9
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.3e-113 412.5 374 57.2
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 4.2e-113 412.1 369 57.7
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 7.2e-113 411.4 366 57.9
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 7.2e-113 411.4 364 59.3
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 1.6e-112 410.2 350 60.9
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.1e-112 409.8 374 59.1
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 3.6e-112 409.1 363 58.1
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 1.4e-111 407.1 365 58.1
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.4e-111 407.1 374 59.4
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 2.3e-111 406.4 371 55.8
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 4.9e-109 398.7 364 58.0
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 6.3e-109 398.3 366 58.7
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 8.3e-109 397.9 363 60.6
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 8.3e-109 397.9 368 59.0
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 1.1e-108 397.5 365 59.5
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 1.1e-108 397.5 372 57.0
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 3.2e-108 396.0 368 58.2
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 5.4e-108 395.2 367 56.9
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 7.0e-108 394.8 372 57.8
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.5e-107 392.5 371 53.6
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.0e-106 391.0 375 57.1
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 3.9e-106 389.0 370 56.8
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 5.0e-106 388.7 369 56.4
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 1.9e-105 386.7 360 58.6
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 4.3e-105 385.6 380 54.7
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 7.3e-105 384.8 355 57.2
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.5e-105 384.4 358 53.9
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 2.1e-104 383.3 376 55.6
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.2e-102 377.5 360 53.9
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.7e-101 372.5 364 54.4
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 2.4e-100 369.8 355 56.3
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 1.2e-99 367.5 362 54.1
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 1.2e-99 367.5 381 52.8
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 3.5e-99 365.9 347 54.8
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.4e-95 354.0 363 52.6
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 1.9e-92 343.6 365 50.1
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 9.2e-92 341.3 365 50.4
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 2.1e-88 330.1 336 53.0
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 2.8e-88 329.7 336 53.0
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 3.2e-84 316.2 460 40.2
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 3.5e-83 312.8 347 48.1
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 1.7e-82 310.5 282 57.8
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 6.6e-82 308.5 291 52.6
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 4.0e-79 299.3 375 42.9
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.5e-78 297.4 362 45.0
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 2.3e-66 256.9 365 41.6
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 3.0e-66 256.5 337 43.6
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 2.5e-65 253.4 337 42.7
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 7.3e-65 251.9 373 39.4
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 3.5e-59 233.0 197 58.9
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 8.7e-58 228.4 229 55.9
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 4.0e-55 219.5 200 50.5
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 3.3e-49 199.9 183 54.6
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 4.8e-48 196.1 175 58.9
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 1.8e-47 194.1 250 54.0
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 9.0e-47 191.8 278 38.8
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 7.9e-43 178.7 242 40.9
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 1.5e-38 164.5 300 32.7
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 3.4e-38 163.3 160 54.4
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 2.9e-37 160.2 110 71.8
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.6e-35 154.5 123 61.8
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 4.6e-35 152.9 162 51.2
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.0e-34 151.8 135 57.8
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.9e-30 136.0 123 56.9
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 1.7e-29 134.4 89 82.0
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 2.5e-28 130.6 108 58.3
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 1.1e-23 115.2 283 30.4
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.4e-23 114.8 98 57.1
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.4e-23 114.8 86 61.6
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 7.0e-23 112.5 86 60.5
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.0e-22 110.9 86 59.3
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.5e-20 102.8 91 56.0
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.8e-16 90.5 94 52.1
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.8e-16 90.5 94 52.1
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 2.4e-15 87.4 105 50.5
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 6.5e-13 79.3 63 58.7
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.5e-12 78.2 79 55.7
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 1.2e-11 75.1 58 65.5
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.2e-11 75.1 65 60.0
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 4.0e-10 70.1 45 77.8
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.2e-09 68.6 59 57.6
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 1.5e-09 68.2 73 52.1


User provided reference genes

Program Settings