Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G3136 Fragaria x ananassa HOM05D006141 ORTHO05D007670 6.8e-111 404.1 212 100.0
FAN28G2755 Fragaria x ananassa HOM05D006141 ORTHO05D007670 1.2e-107 393.3 212 98.1
FAN19G0972 Fragaria x ananassa HOM05D006141 ORTHO05D007670 8.6e-106 387.1 212 96.2
FAN26G1012 Fragaria x ananassa HOM05D006141 ORTHO05D007670 8.1e-104 380.6 233 88.8
FvH4_1g26260 Fragaria vesca HOM05D006141 ORTHO05D007670 4.0e-103 378.3 212 95.3
RcHm_v2.0_Chr3g0485921 Rosa chinensis HOM05D006141 ORTHO05D007670 3.0e-90 335.5 212 85.4
Prupe.3G003000 Prunus persica HOM05D006141 ORTHO05D007670 7.9e-75 284.3 211 74.9
MD17G1284800 Malus domestica HOM05D006141 ORTHO05D007670 1.9e-73 279.6 209 74.2
Ca_09244_v3 Cicer arietinum L. HOM05D006141 ORTHO05D007670 1.5e-65 253.4 213 64.3
Atru.chr5.866 Acer truncatum HOM05D006141 ORTHO05D007670 4.3e-65 251.9 214 66.8
Glyma.19G221200 Glycine max HOM05D006141 ORTHO05D007670 7.4e-65 251.1 213 65.3
Thecc.01G324800 Theobroma cacao HOM05D006141 ORTHO05D007670 1.3e-64 250.4 202 68.8
CANSAT25G1526 Cannabis sativa HOM05D006141 ORTHO05D007670 1.6e-64 250.0 212 66.0
CiPaw.08G082900 Carya illinoinensis HOM05D006141 ORTHO05D007670 3.7e-64 248.8 211 65.9
Rhsim01G0000200 Rhododendron simsii HOM05D006141 ORTHO05D007670 3.7e-64 248.8 206 65.5
Duzib138G1179 Durio zibethinus HOM05D006141 ORTHO05D007670 1.1e-63 247.3 202 67.3
Ciclev10022224m.g Citrus clementina HOM05D006141 ORTHO05D007670 3.1e-63 245.7 211 62.6
Potri.014G112900 Populus trichocarpa HOM05D006141 ORTHO05D007670 3.1e-63 245.7 202 67.8
Cfa004908 Carpinus fangiana HOM05D006141 ORTHO05D007670 5.3e-63 245.0 211 64.5
Manes.01G234600 Manihot esculenta HOM05D006141 ORTHO05D007670 9.0e-63 244.2 211 66.4
Glyma.03G224200 Glycine max HOM05D006141 ORTHO05D007670 1.2e-62 243.8 213 63.8
Sabra14G0083000 Salix brachista HOM05D006141 ORTHO05D007670 2.0e-62 243.0 211 65.4
TPR.G2465 Trifolium pratense HOM05D006141 ORTHO05D007670 3.8e-61 238.8 213 62.0
Medtr7g110620 Medicago truncatula HOM05D006141 ORTHO05D007670 5.0e-61 238.4 213 62.4
Nn4g25355 Nelumbo nucifera HOM05D006141 ORTHO05D007670 8.4e-61 237.7 203 65.5
Psat3g016880 Pisum sativum HOM05D006141 ORTHO05D007670 8.4e-61 237.7 213 62.0
QL12p034897 Quercus lobata HOM05D006141 ORTHO05D007670 2.5e-60 236.1 211 63.0
Phvul.001G218100 Phaseolus vulgaris HOM05D006141 ORTHO05D007670 4.2e-60 235.3 204 62.7
TWI59G0338 Tripterygium wilfordii HOM05D006141 ORTHO05D007670 1.6e-59 233.4 202 62.9
VMungo1383G2247 Vigna mungo HOM05D006141 ORTHO05D007670 1.6e-59 233.4 204 62.7
Gohir.A08G036900 Gossypium hirsutum HOM05D006141 ORTHO05D007670 2.1e-59 233.0 202 65.3
GSVIVG01028253001 Vitis vinifera HOM05D006141 ORTHO05D007670 3.5e-59 232.3 202 62.4
Gohir.D08G047500 Gossypium hirsutum HOM05D006141 ORTHO05D007670 1.0e-58 230.7 202 64.4
Sopen01g030090 Solanum pennellii HOM05D006141 ORTHO05D007670 1.3e-58 230.3 218 60.6
TAR362G0148 Trochodendron aralioides HOM05D006141 ORTHO05D007670 1.3e-58 230.3 203 64.5
Aqoxy2G02498 Aquilegia oxysepala HOM05D006141 ORTHO05D007670 5.1e-58 228.4 206 65.0
Gorai.004G046700 Gossypium raimondii HOM05D006141 ORTHO05D007670 5.1e-58 228.4 202 63.9
Lalb_Chr18g0046401 Lupinus albus HOM05D006141 ORTHO05D007670 6.7e-58 228.0 207 61.8
Solyc01g068150.3 Solanum lycopersicum HOM05D006141 ORTHO05D007670 6.3e-56 221.5 208 61.1
PGR042G1406 Punica granatum HOM05D006141 ORTHO05D007670 8.2e-56 221.1 203 65.5
Actinidia20966 Actinidia chinensis HOM05D006141 ORTHO05D007670 1.4e-55 220.3 211 61.6
COL.COLO4_23134 Corchorus olitorius HOM05D006141 ORTHO05D007670 3.1e-55 219.2 204 61.8
CSS0000718 Camellia sinensis var. sinensis HOM05D006141 ORTHO05D007670 4.1e-55 218.8 177 66.1
MBI18_g10378_MAGBIO Magnolia biondii HOM05D006141 ORTHO05D007670 6.9e-55 218.0 205 62.0
Nitab4.5_0000222g0340 Nicotiana tabacum HOM05D006141 ORTHO05D007670 6.9e-55 218.0 217 58.1
DCAR_012301 Daucus carota HOM05D006141 ORTHO05D007670 1.2e-54 217.2 205 61.0
Hma1.2p1_0408F.1_g146310 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 7.7e-54 214.5 202 60.9
Migut.D00015 Erythranthe guttata HOM05D006141 ORTHO05D007670 1.3e-53 213.8 216 57.9
AL5G44810 Arabidopsis lyrata HOM05D006141 ORTHO05D007670 3.8e-53 212.2 214 59.3
ClCG01G007160 Citrullus lanatus HOM05D006141 ORTHO05D007670 3.8e-53 212.2 203 59.1
arahy.Tifrunner.gnm1.ann1.YFT3VK Arachis hypogaea HOM05D006141 ORTHO05D007670 1.1e-52 210.7 230 55.7
arahy.Tifrunner.gnm1.ann1.3ZI6V8 Arachis hypogaea HOM05D006141 ORTHO05D007670 1.4e-52 210.3 227 54.2
AUR62004945 Chenopodium quinoa HOM05D006141 ORTHO05D007670 1.4e-52 210.3 215 57.2
AUR62001013 Chenopodium quinoa HOM05D006141 ORTHO05D007670 1.9e-52 209.9 215 57.2
arahy.Tifrunner.gnm1.ann1.XETR8R Arachis hypogaea HOM05D006141 ORTHO05D007670 3.2e-52 209.1 228 54.4
PSO210G0852 Papaver somniferum HOM05D006141 ORTHO05D007670 9.4e-52 207.6 205 60.0
THA.LOC104817433 Tarenaya hassleriana HOM05D006141 ORTHO05D007670 9.4e-52 207.6 208 58.2
AT3G62140 Arabidopsis thaliana HOM05D006141 ORTHO05D007670 1.6e-51 206.8 214 58.4
Carub.0005s2889 Capsella rubella HOM05D006141 ORTHO05D007670 1.6e-51 206.8 219 59.4
MSTRG.21729 Avicennia marina HOM05D006141 ORTHO05D007670 2.1e-51 206.5 202 57.9
SGA_v2.0_scaffold417G51257 Striga asiatica HOM05D006141 ORTHO05D007670 2.7e-51 206.1 219 56.2
PSO761G0605 Papaver somniferum HOM05D006141 ORTHO05D007670 3.6e-51 205.7 205 60.0
CARHR172480 Cardamine hirsuta HOM05D006141 ORTHO05D007670 6.1e-51 204.9 205 60.0
ATR0796G189 Amborella trichopoda HOM05D006141 ORTHO05D007670 1.4e-50 203.8 204 57.4
Thhalv10006233m.g Eutrema salsugineum HOM05D006141 ORTHO05D007670 1.8e-50 203.4 222 57.7
CsaV3_5G018600 Cucumis sativus L. HOM05D006141 ORTHO05D007670 2.3e-50 203.0 204 58.8
Ah.11g045950 Amaranthus hybridus HOM05D006141 ORTHO05D007670 3.0e-50 202.6 209 58.4
Sed0006054 Sechium edule HOM05D006141 ORTHO05D007670 3.9e-50 202.2 203 58.6
EL10Ac6g14128 Beta vulgaris HOM05D006141 ORTHO05D007670 8.8e-50 201.1 209 57.9
MELO3C005194.2 Cucumis melo HOM05D006141 ORTHO05D007670 8.8e-50 201.1 204 57.8
Aa31LG10G16170 Aethionema arabicum HOM05D006141 ORTHO05D007670 1.1e-49 200.7 217 57.1
HanXRQChr06g0167971 Helianthus annuus HOM05D006141 ORTHO05D007670 3.3e-49 199.1 202 57.4
CDE09G0801 Ceratophyllum demersum HOM05D006141 ORTHO05D007670 4.3e-49 198.7 203 59.6
Dinv33165 Davidia involucrata HOM05D006141 ORTHO05D007670 1.7e-48 196.8 210 54.3
ECA236G4451 Erigeron canadensis HOM05D006141 ORTHO05D007670 2.2e-48 196.4 212 55.2
Peaxi162Scf00309g01021 Petunia axillaris HOM05D006141 ORTHO05D007670 3.1e-47 192.6 217 53.0
Cc01_g21800 Coffea canephora HOM05D006141 ORTHO05D007670 4.1e-47 192.2 202 56.9
Sp5g01230 Schrenkiella parvula HOM05D006141 ORTHO05D007670 4.1e-47 192.2 215 56.3
HPP92_018284 Vanilla planifolia HOM05D006141 ORTHO05D007670 4.5e-46 188.7 202 56.4
BcaC07g40706 Brassica carinata HOM05D006141 ORTHO05D007670 7.7e-46 188.0 205 55.6
SalBow6G5482 Salvia bowleyana HOM05D006141 ORTHO05D007670 5.0e-45 185.3 202 54.0
C06p28110 Brassica napus HOM05D006141 ORTHO05D007670 6.5e-45 184.9 213 53.1
BolC6t37977H Brassica oleracea HOM05D006141 ORTHO05D007670 6.5e-45 184.9 213 53.1
C08p37090 Brassica napus HOM05D006141 ORTHO05D007670 3.2e-44 182.6 205 54.6
BolC8t51287H Brassica oleracea HOM05D006141 ORTHO05D007670 3.2e-44 182.6 205 54.6
A07p25870 Brassica napus HOM05D006141 ORTHO05D007670 5.5e-44 181.8 215 53.5
Rhsim01G0085900 Rhododendron simsii HOM05D006141 ORTHO05D007670 4.7e-43 178.7 205 50.7
Os01g0321800 Oryza sativa ssp. japonica HOM05D006141 ORTHO05D007670 6.1e-43 178.3 211 52.6
A09p54230 Brassica napus HOM05D006141 ORTHO05D007670 1.4e-42 177.2 207 55.1
BraA09t40835Z Brassica rapa HOM05D006141 ORTHO05D007670 1.4e-42 177.2 207 55.1
Cpa.g.sc57.10 Carica papaya HOM05D006141 ORTHO05D007670 1.8e-42 176.8 128 72.7
Lsat_1_v5_gn_8_167241 Lactuca sativa HOM05D006141 ORTHO05D007670 1.8e-42 176.8 206 54.4
BcaB02g07358 Brassica carinata HOM05D002572 ORTHO05D002800 3.9e-42 175.6 199 56.8
Rhsim01G0080900 Rhododendron simsii HOM05D006141 ORTHO05D007670 6.7e-42 174.9 172 59.3
SEGI_07518 Sequoiadendron giganteum HOM05D006141 ORTHO05D007670 1.5e-41 173.7 204 51.5
unitig_578.g16642 Utricularia gibba HOM05D006141 ORTHO05D007670 1.7e-40 170.2 210 48.6
Hma1.2p1_0408F.1_g146320 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 6.3e-40 168.3 111 78.4
CAN.G100.55 Capsicum annuum HOM05D006141 ORTHO05D007670 1.8e-39 166.8 122 70.5
Zm00001eb340460 Zea mays HOM05D006141 ORTHO05D007670 1.1e-36 157.5 113 70.8
BcaC08g45187 Brassica carinata HOM05D006141 ORTHO05D007670 1.5e-36 157.1 123 69.1
Lj1g0014608 Lotus japonicus HOM05D006141 ORTHO05D007670 3.2e-36 156.0 204 47.5
Rhsim01G0086800 Rhododendron simsii HOM05D006141 ORTHO05D007670 3.0e-34 149.4 206 48.1
Ciclev10030010m.g Citrus clementina HOM05D006141 ORTHO05D007670 5.7e-33 145.2 203 46.8
Ciclev10030079m.g Citrus clementina HOM05D006141 ORTHO05D007670 2.0e-30 136.7 187 44.9
Ciclev10030249m.g Citrus clementina HOM05D006141 ORTHO05D007670 3.5e-30 136.0 187 45.5
BcaB02g07360 Brassica carinata HOM05D006141 ORTHO05D007670 1.7e-29 133.7 91 74.7
BraA07t30234Z Brassica rapa HOM05D006141 ORTHO05D007670 1.7e-29 133.7 88 77.3
Lj2A1216T56 Lonicera japonica HOM05D006141 ORTHO05D007670 3.6e-27 125.9 75 82.7
Pp3c2_35190 Physcomitrium patens HOM05D006141 ORTHO05D007670 8.8e-26 121.3 204 39.2
Mapoly0026s0067 Marchantia polymorpha HOM05D006141 ORTHO05D007670 4.4e-25 119.0 213 40.4
Rhsim12G0140700 Rhododendron simsii HOM05D006141 ORTHO05D007670 4.2e-20 102.4 153 47.1
Haze_05144 Corylus avellana HOM05D006141 ORTHO05D007670 9.4e-20 101.3 211 36.0
Rhsim01G0082900 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.4e-18 97.4 167 41.3
SHI33165 Sapria himalayana HOM05D006141 ORTHO05D007670 2.6e-17 93.2 123 46.3
Nitab4.5_0008976g0040 Nicotiana tabacum HOM05D006141 ORTHO05D007670 3.8e-13 79.3 126 42.9
FAN03G1225 Fragaria x ananassa HOM05D006141 ORTHO05D007670 8.6e-13 78.2 44 81.8
CBR_g57079 Chara braunii HOM05D006141 ORTHO05D007670 3.3e-12 76.3 67 58.2
Rhsim01G0081900 Rhododendron simsii HOM05D006141 ORTHO05D007670 7.3e-12 75.1 53 71.7
BcaC09g48717 Brassica carinata HOM05D001214 ORTHO05D001029 2.1e-11 73.6 45 77.8
AagrBONN_evm.TU.Sc2ySwM_368.766 Anthoceros agrestis HOM05D006141 ORTHO05D007670 3.0e-10 69.7 150 36.7
DCAR_012300 Daucus carota HOM05D006141 ORTHO05D007670 4.9e-08 62.4 36 75.0
Atru.chr5.867 Acer truncatum HOM05D006141 ORTHO05D007670 1.8e-07 60.5 88 42.0
Rhsim01G0083000 Rhododendron simsii HOM05D006141 ORTHO05D007670 5.4e-07 58.9 113 42.5
Cpa.g.sc57.9 Carica papaya HOM05D006141 ORTHO05D007670 1.6e-06 57.4 78 44.9
Cre11.g477250 Chlamydomonas reinhardtii HOM05D006141 ORTHO05D007670 4.6e-06 55.8 101 36.6


User provided reference genes

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