Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 6.0e-52 207.2 104 100.0
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 6.0e-52 207.2 104 100.0
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 2.8e-25 118.6 65 92.3
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 2.8e-25 118.6 65 92.3
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 2.8e-25 118.6 65 92.3
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 8.2e-25 117.1 65 90.8
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 8.2e-25 117.1 65 89.2
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 2.2e-22 109.0 65 84.6
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 3.5e-20 101.7 65 80.0
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 3.9e-19 98.2 65 76.9
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 1.1e-18 96.7 65 73.8
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 3.3e-18 95.1 65 72.3
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 9.7e-18 93.6 66 72.7
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 1.6e-17 92.8 66 75.8
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 6.3e-17 90.9 102 55.9
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 8.2e-17 90.5 102 55.9
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 2.0e-15 85.9 65 69.2
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 2.6e-15 85.5 66 66.7
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 3.4e-15 85.1 103 53.4
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 1.0e-14 83.6 66 66.7
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 1.7e-14 82.8 108 50.9
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 1.7e-14 82.8 108 49.1
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 5.0e-14 81.3 66 66.7
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 5.0e-14 81.3 94 51.1
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 6.5e-14 80.9 66 65.2
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 2.5e-13 79.0 66 62.1
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 3.2e-13 78.6 66 57.6
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 3.2e-13 78.6 66 63.6
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 3.2e-13 78.6 66 63.6
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 4.2e-13 78.2 66 63.6
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 4.2e-13 78.2 66 60.6
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 5.5e-13 77.8 65 64.6
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 1.2e-12 76.6 92 51.1
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 1.6e-12 76.3 66 57.6
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 2.1e-12 75.9 91 48.4
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 2.1e-12 75.9 91 49.5
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 2.1e-12 75.9 91 49.5
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 2.7e-12 75.5 107 47.7
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 2.7e-12 75.5 108 46.3
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 2.7e-12 75.5 91 48.4
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 4.6e-12 74.7 66 57.6
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 7.9e-12 73.9 91 48.4
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 1.0e-11 73.6 64 64.1
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 2.3e-11 72.4 66 56.1
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 3.9e-11 71.6 107 43.9
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 5.1e-11 71.2 101 43.6
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 6.7e-11 70.9 64 53.1
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 8.8e-11 70.5 66 59.1
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 8.8e-11 70.5 66 59.1
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 8.8e-11 70.5 64 62.5
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 1.1e-10 70.1 101 43.6
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 1.5e-10 69.7 65 56.9
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 2.0e-10 69.3 100 50.0
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 2.0e-10 69.3 64 60.9
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 2.0e-10 69.3 66 57.6
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 3.3e-10 68.6 43 74.4
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 4.3e-10 68.2 107 42.1
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 4.3e-10 68.2 65 55.4
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 4.3e-10 68.2 66 57.6
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 4.3e-10 68.2 112 43.8
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 5.7e-10 67.8 106 40.6
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 5.7e-10 67.8 66 54.5
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 7.4e-10 67.4 66 54.5
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 9.7e-10 67.0 65 53.8
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 1.3e-09 66.6 65 53.8
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 1.3e-09 66.6 65 52.3
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 1.3e-09 66.6 105 46.7
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 1.7e-09 66.2 66 53.0
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 2.2e-09 65.9 35 88.6
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 2.2e-09 65.9 105 46.7
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 2.2e-09 65.9 106 46.2
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 2.2e-09 65.9 44 68.2
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 2.2e-09 65.9 101 46.5
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 3.7e-09 65.1 65 52.3
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 3.7e-09 65.1 64 57.8
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 6.3e-09 64.3 64 57.8
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 6.3e-09 64.3 64 57.8
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 6.3e-09 64.3 64 57.8
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 1.4e-08 63.2 33 87.9
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 2.4e-08 62.4 65 53.8
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 3.1e-08 62.0 37 83.8
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 4.1e-08 61.6 66 50.0
Lj9A617T57 Lonicera japonica HOM05D004910 ORTHO05D006864 1.2e-07 60.1 35 82.9
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 2.0e-07 59.3 35 82.9
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 2.6e-07 58.9 37 81.1
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 2.2e-06 55.8 37 70.3
SEGI_03420 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 6.5e-06 54.3 35 74.3


User provided reference genes

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