Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 6.7e-50 200.3 95 100.0
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 6.7e-50 200.3 95 100.0
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.5e-49 199.1 95 98.9
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.9e-49 198.7 95 98.9
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 7.7e-46 186.8 95 92.6
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 6.5e-21 104.0 95 61.1
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.5e-20 102.8 90 62.2
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.5e-20 102.8 78 65.4
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 9.4e-20 100.1 95 55.8
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 9.4e-20 100.1 95 55.8
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 1.2e-19 99.8 95 57.9
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.6e-19 99.4 95 55.8
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 1.8e-18 95.9 95 52.6
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 2.3e-18 95.5 95 56.8
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 4.0e-18 94.7 95 56.8
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.0e-17 92.4 95 52.6
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.4e-17 91.3 95 52.6
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 4.4e-17 91.3 95 52.6
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 1.7e-16 89.4 96 57.3
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 1.1e-15 86.7 96 49.0
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.4e-15 86.3 95 49.5
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.8e-15 85.9 92 56.5
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 5.4e-15 84.3 77 55.8
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 9.1e-15 83.6 93 48.4
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 9.1e-15 83.6 48 77.1
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 9.1e-15 83.6 95 48.4
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 9.1e-15 83.6 95 48.4
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.6e-14 82.8 95 44.2
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.7e-14 82.0 76 55.3
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 2.7e-14 82.0 95 51.6
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 3.5e-14 81.6 95 50.5
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 7.7e-14 80.5 46 78.3
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 1.0e-13 80.1 83 57.8
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 1.3e-13 79.7 95 46.3
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.9e-13 78.6 82 50.0
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 3.8e-13 78.2 95 48.4
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 3.8e-13 78.2 95 48.4
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 6.5e-13 77.4 46 76.1
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 3.2e-12 75.1 46 73.9
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 3.2e-12 75.1 84 48.8
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 4.2e-12 74.7 84 50.0
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 5.5e-12 74.3 47 68.1
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 7.2e-12 73.9 96 49.0
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 2.8e-11 72.0 83 47.0
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 3.6e-11 71.6 96 47.9
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 3.6e-11 71.6 96 47.9
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 4.7e-11 71.2 85 48.2
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 6.1e-11 70.9 96 46.9
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 6.1e-11 70.9 96 46.9
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 8.0e-11 70.5 94 44.7
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 1.0e-10 70.1 79 48.1
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 1.0e-10 70.1 79 48.1
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 1.0e-10 70.1 79 48.1
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 1.8e-10 69.3 47 66.0
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 2.3e-10 68.9 91 45.1
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 2.3e-10 68.9 91 45.1
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 4.0e-10 68.2 82 47.6
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 6.8e-10 67.4 41 70.7
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 8.8e-10 67.0 75 46.7
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 1.2e-09 66.6 78 48.7
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.5e-09 66.2 89 44.9
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.0e-09 65.9 83 48.2
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 2.6e-09 65.5 91 44.0
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 3.4e-09 65.1 91 40.7
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 4.4e-09 64.7 97 44.3
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 7.5e-09 63.9 91 40.7
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 9.8e-09 63.5 82 45.1
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 9.8e-09 63.5 82 45.1
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 9.8e-09 63.5 95 42.1
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 9.8e-09 63.5 50 52.0
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 1.3e-08 63.2 95 37.9
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 1.3e-08 63.2 67 46.3
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.7e-08 62.8 91 41.8
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 1.7e-08 62.8 83 43.4
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 2.2e-08 62.4 55 54.5
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 2.8e-08 62.0 89 42.7
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 2.8e-08 62.0 91 42.9
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 4.9e-08 61.2 74 44.6
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 4.9e-08 61.2 74 44.6
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 4.9e-08 61.2 74 44.6
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 4.9e-08 61.2 74 44.6
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 4.9e-08 61.2 56 55.4
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.9e-08 61.2 74 43.2
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 4.9e-08 61.2 55 52.7
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 4.9e-08 61.2 83 42.2
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 6.3e-08 60.8 68 45.6
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 6.3e-08 60.8 34 73.5
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 8.3e-08 60.5 74 43.2
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 1.1e-07 60.1 56 55.4
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 1.1e-07 60.1 82 47.6
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 1.1e-07 60.1 82 47.6
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 1.1e-07 60.1 82 47.6
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 1.1e-07 60.1 79 40.5
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 1.8e-07 59.3 82 46.3
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 1.8e-07 59.3 66 45.5
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 1.8e-07 59.3 82 46.3
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 1.8e-07 59.3 66 45.5
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 1.8e-07 59.3 66 45.5
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.8e-07 59.3 83 44.6
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.8e-07 59.3 80 45.0
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.8e-07 59.3 81 40.7
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.8e-07 59.3 82 40.2
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.4e-07 58.9 97 38.1
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 2.4e-07 58.9 78 41.0
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 3.1e-07 58.5 106 36.8
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 3.1e-07 58.5 74 43.2
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 4.1e-07 58.2 80 36.2
Migut.L00808 Erythranthe guttata HOM05D004540 ORTHO05D004852 4.1e-07 58.2 93 36.6
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 4.1e-07 58.2 47 57.4
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 4.1e-07 58.2 80 41.2
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 9.2e-07 57.0 76 42.1
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 9.2e-07 57.0 76 44.7
TPR.G10141 Trifolium pratense HOM05D004540 ORTHO05D004852 9.2e-07 57.0 55 50.9
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 1.2e-06 56.6 78 39.7
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-06 56.2 104 37.5
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 1.6e-06 56.2 104 37.5
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.6e-06 56.2 79 43.0
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 3.5e-06 55.1 92 45.7
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 3.5e-06 55.1 27 81.5
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 3.5e-06 55.1 27 81.5
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 3.5e-06 55.1 27 81.5
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 3.5e-06 55.1 64 45.3
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 4.5e-06 54.7 25 88.0
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 4.5e-06 54.7 80 33.8
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 4.5e-06 54.7 28 78.6
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 4.5e-06 54.7 71 45.1
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 5.9e-06 54.3 28 78.6


User provided reference genes

Program Settings