Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.8e-59 231.9 126 100.0
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.8e-57 223.4 126 97.6
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.8e-57 223.4 126 97.6
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 1.1e-55 219.9 126 96.0
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.4e-55 219.5 126 96.0
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.8e-55 219.2 126 96.0
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 6.6e-53 210.7 126 91.3
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.5e-49 197.2 126 84.9
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.9e-48 195.3 126 84.1
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 3.7e-48 194.9 126 83.3
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.7e-48 194.9 126 83.3
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 4.9e-48 194.5 126 84.1
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.9e-48 194.5 126 84.1
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.4e-48 194.1 126 83.3
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.4e-47 193.0 126 83.3
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.1e-47 191.4 126 81.7
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 5.6e-44 181.0 126 84.1
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 2.1e-38 162.5 127 74.0
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 6.0e-38 161.0 118 72.0
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 5.1e-37 157.9 124 72.6
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 1.5e-36 156.4 124 71.0
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.9e-36 156.0 123 71.5
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 1.9e-36 156.0 126 69.8
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 2.5e-36 155.6 123 73.2
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 3.3e-36 155.2 123 73.2
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.6e-35 152.9 127 69.3
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 2.1e-35 152.5 96 83.3
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 2.1e-35 152.5 124 69.4
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 3.6e-35 151.8 125 69.6
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 6.2e-35 151.0 123 67.5
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 1.1e-34 150.2 123 69.9
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.8e-34 149.4 121 68.6
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.8e-34 149.4 121 69.4
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 3.1e-34 148.7 121 68.6
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 3.1e-34 148.7 125 68.8
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.2e-34 147.9 103 78.6
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 6.8e-34 147.5 124 67.7
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 8.9e-34 147.1 113 73.5
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 1.2e-33 146.7 124 65.3
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.0e-33 146.0 125 68.8
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 2.0e-33 146.0 124 66.1
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 4.4e-33 144.8 121 67.8
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 5.8e-33 144.4 127 66.9
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 7.6e-33 144.1 128 68.0
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 7.6e-33 144.1 125 68.0
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 1.7e-32 142.9 119 66.4
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.7e-32 142.9 125 68.8
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.9e-32 142.1 128 68.0
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 4.9e-32 141.4 125 68.0
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 6.4e-32 141.0 124 65.3
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 6.4e-32 141.0 123 64.2
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 6.4e-32 141.0 125 68.0
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 6.4e-32 141.0 122 66.4
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 8.4e-32 140.6 124 67.7
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.1e-31 140.2 103 70.9
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 1.4e-31 139.8 105 71.4
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 1.9e-31 139.4 123 62.6
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 2.4e-31 139.0 123 62.6
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 4.1e-31 138.3 123 65.0
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 5.4e-31 137.9 123 64.2
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 1.2e-30 136.7 127 66.9
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 3.5e-30 135.2 125 65.6
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 4.6e-30 134.8 123 63.4
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 7.8e-30 134.0 129 63.6
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 7.8e-30 134.0 126 63.5
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 7.8e-30 134.0 123 64.2
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 1.0e-29 133.7 125 63.2
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 2.3e-29 132.5 126 62.7
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 2.3e-29 132.5 123 61.8
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 3.0e-29 132.1 125 65.6
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 3.0e-29 132.1 127 64.6
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 6.6e-29 131.0 118 66.9
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 8.6e-29 130.6 124 62.9
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 8.6e-29 130.6 123 61.0
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 8.6e-29 130.6 125 67.2
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 1.1e-28 130.2 94 79.8
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 1.1e-28 130.2 124 64.5
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 1.5e-28 129.8 120 60.8
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 1.9e-28 129.4 120 61.7
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 1.9e-28 129.4 123 62.6
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 1.9e-28 129.4 123 63.4
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 3.3e-28 128.6 128 60.9
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 3.3e-28 128.6 127 64.6
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 3.3e-28 128.6 124 58.1
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 4.3e-28 128.3 123 62.6
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 5.6e-28 127.9 125 64.0
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 5.6e-28 127.9 122 62.3
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 9.6e-28 127.1 123 60.2
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 1.2e-27 126.7 122 60.7
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 1.6e-27 126.3 129 60.5
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 1.6e-27 126.3 123 60.2
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.8e-27 125.6 125 62.4
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 3.6e-27 125.2 127 64.6
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 3.6e-27 125.2 125 60.0
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 4.7e-27 124.8 126 57.1
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 8.1e-27 124.0 129 62.8
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 1.1e-26 123.6 124 55.6
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 1.4e-26 123.2 120 60.0
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 2.4e-26 122.5 123 58.5
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 2.4e-26 122.5 123 60.2
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 3.1e-26 122.1 117 60.7
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 3.1e-26 122.1 125 59.2
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 4.0e-26 121.7 120 63.3
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 5.2e-26 121.3 122 56.6
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 5.2e-26 121.3 122 56.6
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 5.2e-26 121.3 120 61.7
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 8.9e-26 120.6 124 60.5
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 8.9e-26 120.6 126 57.9
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 1.2e-25 120.2 129 62.8
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 1.2e-25 120.2 129 62.8
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 1.2e-25 120.2 120 62.5
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 1.5e-25 119.8 129 62.8
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 1.5e-25 119.8 129 62.8
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 1.5e-25 119.8 129 62.8
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 1.5e-25 119.8 129 61.2
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 2.0e-25 119.4 123 56.9
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 2.0e-25 119.4 126 58.7
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 2.6e-25 119.0 123 58.5
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 2.6e-25 119.0 123 59.3
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 3.4e-25 118.6 127 59.1
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 4.4e-25 118.2 133 57.9
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 5.8e-25 117.9 126 57.1
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 5.8e-25 117.9 131 59.5
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 7.6e-25 117.5 131 61.1
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 7.6e-25 117.5 125 61.6
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 7.6e-25 117.5 125 56.8
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 7.6e-25 117.5 129 58.9
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 7.6e-25 117.5 131 55.7
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 9.9e-25 117.1 123 56.9
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 9.9e-25 117.1 124 58.1
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 1.7e-24 116.3 131 60.3
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 2.2e-24 115.9 131 60.3
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 2.2e-24 115.9 109 61.5
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 8.4e-24 114.0 130 56.2
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 1.1e-23 113.6 124 55.6
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 1.9e-23 112.8 131 55.0
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 1.9e-23 112.8 123 57.7
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 5.4e-23 111.3 124 56.5
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.2e-22 110.2 128 54.7
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 1.6e-22 109.8 122 53.3
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 6.0e-22 107.8 127 53.5
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 7.8e-22 107.5 128 53.9
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 8.7e-21 104.0 126 49.2
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 2.5e-20 102.4 122 54.9
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 2.1e-19 99.4 127 55.9
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 8.1e-19 97.4 118 50.0
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 8.1e-19 97.4 124 50.0
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 2.6e-17 92.4 113 49.6
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 9.9e-17 90.5 105 51.4
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 2.2e-16 89.4 123 45.5
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 2.9e-16 89.0 73 68.5
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 5.4e-15 84.7 79 63.3
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 2.1e-14 82.8 122 41.8
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 4.6e-14 81.6 51 88.2
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 1.0e-13 80.5 88 51.1
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.7e-13 79.7 122 39.3
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 6.6e-13 77.8 58 72.4
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 1.9e-12 76.3 125 44.0
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 5.6e-12 74.7 71 57.7
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 4.8e-11 71.6 109 46.8
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 2.6e-09 65.9 124 37.9
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 4.9e-08 61.6 124 36.3
Actinidia12967 Actinidia chinensis HOM05D008110 ORTHO05D000088 5.5e-07 58.2 79 45.6
Psat3g122680 Pisum sativum HOM05D004388 ORTHO05D005106 1.2e-06 57.0 114 43.0


User provided reference genes

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