Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.1e-116 423.3 212 100.0
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 3.9e-114 414.8 210 98.6
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.9e-114 414.8 210 98.1
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.9e-113 412.5 210 97.6
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 1.8e-111 406.0 210 95.2
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 2.1e-99 365.9 210 84.3
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 1.1e-97 360.1 210 83.3
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 1.5e-97 359.8 207 85.5
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.9e-97 359.4 210 81.9
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 2.5e-97 359.0 210 82.4
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 3.3e-97 358.6 206 83.0
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 7.3e-97 357.5 209 82.3
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 4.7e-96 354.8 209 81.3
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 4.7e-96 354.8 205 83.4
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 8.1e-96 354.0 209 81.8
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.1e-95 353.6 206 81.1
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 1.1e-95 353.6 209 79.9
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 1.1e-95 353.6 209 81.8
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 1.8e-95 352.8 210 81.0
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 2.4e-95 352.4 209 82.3
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 2.4e-95 352.4 206 83.0
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 2.4e-95 352.4 206 82.0
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 2.4e-95 352.4 209 81.3
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 6.8e-95 350.9 210 80.5
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 1.2e-94 350.1 209 80.4
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 1.5e-94 349.7 209 82.3
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 3.4e-94 348.6 206 79.6
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 3.4e-94 348.6 210 78.1
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 5.8e-94 347.8 209 79.4
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 2.2e-93 345.9 209 79.9
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 2.2e-93 345.9 210 79.0
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 2.9e-93 345.5 209 78.9
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 3.8e-93 345.1 209 78.9
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 6.4e-93 344.4 209 78.0
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 6.4e-93 344.4 209 77.0
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 8.4e-93 344.0 209 78.0
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 8.4e-93 344.0 209 79.4
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 1.1e-92 343.6 207 78.7
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.1e-92 343.6 206 79.6
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 1.4e-92 343.2 209 77.5
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.9e-92 342.8 210 79.0
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 4.2e-92 341.7 209 78.9
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 7.1e-92 340.9 208 78.8
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 7.1e-92 340.9 206 80.1
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 7.1e-92 340.9 209 78.0
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 1.2e-91 340.1 209 76.6
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 1.6e-91 339.7 209 78.0
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 2.1e-91 339.3 206 79.6
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 2.7e-91 339.0 213 79.3
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 2.7e-91 339.0 209 78.0
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 4.6e-91 338.2 215 75.8
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 7.8e-91 337.4 209 77.5
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 1.0e-90 337.0 209 77.0
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 1.3e-90 336.7 205 77.6
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 3.0e-90 335.5 210 77.1
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 3.0e-90 335.5 205 79.5
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 5.1e-90 334.7 230 71.3
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 6.6e-90 334.3 205 78.0
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 8.7e-90 334.0 205 79.5
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 1.1e-89 333.6 210 76.2
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 5.6e-89 331.3 206 76.2
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 5.6e-89 331.3 208 75.0
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 1.3e-88 330.1 206 77.2
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.3e-88 330.1 210 77.1
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 1.6e-88 329.7 206 77.2
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 2.1e-88 329.3 206 77.2
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 2.1e-88 329.3 206 77.2
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 2.1e-88 329.3 206 77.2
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 4.8e-88 328.2 206 76.7
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 8.1e-88 327.4 206 77.2
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 1.1e-87 327.0 206 76.7
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 1.1e-87 327.0 206 76.7
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 1.4e-87 326.6 206 75.7
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 1.4e-87 326.6 206 76.7
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 4.0e-87 325.1 206 76.2
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 5.3e-87 324.7 211 73.0
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 6.9e-87 324.3 206 75.2
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 9.0e-87 323.9 209 74.6
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 2.6e-86 322.4 209 74.2
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 4.4e-86 321.6 206 75.2
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 4.4e-86 321.6 203 76.4
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 5.8e-86 321.2 206 75.2
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 4.9e-85 318.2 215 72.1
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 6.4e-85 317.8 211 72.5
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 6.4e-85 317.8 210 72.9
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 8.4e-85 317.4 209 73.7
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 1.9e-84 316.2 208 74.0
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 7.1e-84 314.3 203 71.9
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 3.5e-83 312.0 210 74.3
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 3.9e-82 308.5 186 76.9
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 5.1e-82 308.1 178 87.6
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 8.7e-82 307.4 210 69.5
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 3.3e-81 305.4 212 68.4
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 1.3e-80 303.5 210 71.9
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 2.8e-80 302.4 214 69.6
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 1.2e-78 297.0 203 68.0
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 1.9e-76 289.7 207 68.1
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 2.7e-75 285.8 208 68.8
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 6.0e-75 284.6 191 73.3
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 7.9e-75 284.3 173 76.3
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.3e-74 283.5 203 67.5
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 8.7e-74 280.8 203 67.0
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 1.1e-71 273.9 167 76.0
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 3.1e-71 272.3 166 75.9
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 1.7e-69 266.5 157 80.9
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 5.7e-65 251.5 157 76.4
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 3.1e-63 245.7 157 76.4
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 4.1e-63 245.4 254 50.4
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 1.1e-60 237.3 193 61.7
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 8.2e-56 221.1 137 73.7
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 6.9e-55 218.0 211 50.2
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 2.6e-54 216.1 182 58.8
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 4.2e-52 208.8 208 51.4
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 3.6e-51 205.7 157 65.0
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 1.2e-46 190.7 127 71.7
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 1.2e-46 190.7 127 71.7
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 2.0e-46 189.9 142 65.5
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 3.4e-46 189.1 210 51.0
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 4.1e-39 165.6 95 84.2
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 4.5e-38 162.2 223 40.8
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 4.5e-38 162.2 223 40.8
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 5.2e-26 122.1 196 36.2
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 1.0e-21 107.8 96 61.5
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 5.5e-20 102.1 87 59.8
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 8.8e-18 94.7 65 64.6
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.5e-17 94.0 53 83.0
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.5e-17 94.0 52 84.6
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 7.0e-15 85.1 72 61.1
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 7.0e-15 85.1 57 66.7
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 3.5e-14 82.8 53 77.4
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 4.5e-14 82.4 48 79.2
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 6.1e-11 72.0 38 89.5
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 3.4e-09 66.2 48 64.6
arahy.Tifrunner.gnm1.ann1.43H8SX Arachis hypogaea HOM05D000371 ORTHO05D013217 1.7e-08 63.9 39 69.2
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 2.2e-08 63.5 134 35.8
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 8.3e-08 61.6 39 76.9
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 7.0e-07 58.5 39 76.9
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 2.0e-06 57.0 33 78.8
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 4.6e-06 55.8 36 63.9


User provided reference genes

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