Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.5e-130 468.8 235 100.0
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.2e-93 345.1 237 75.9
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.5e-74 283.5 179 84.9
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 2.5e-69 266.2 251 62.5
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 9.7e-66 254.2 249 60.6
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 1.3e-65 253.8 251 60.2
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-65 253.8 249 60.6
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 9.0e-64 247.7 251 59.8
FAN23G0109 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.7e-57 226.9 116 99.1
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.0e-55 219.9 256 53.9
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 1.3e-54 217.2 250 50.0
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 1.3e-49 200.7 250 48.4
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 7.7e-47 191.4 253 47.4
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 1.7e-46 190.3 259 47.1
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 1.1e-45 187.6 261 47.1
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.8e-43 180.3 248 44.0
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 5.2e-43 178.7 250 43.6
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 1.1e-42 177.6 251 42.2
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 1.5e-42 177.2 250 43.2
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 3.3e-42 176.0 247 44.5
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 4.4e-42 175.6 250 43.6
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 4.4e-42 175.6 248 44.8
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 7.5e-42 174.9 250 43.6
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 2.8e-41 172.9 248 42.3
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 4.8e-41 172.2 248 41.9
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 8.2e-41 171.4 239 46.4
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 1.1e-40 171.0 246 44.3
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 5.3e-40 168.7 249 42.6
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.2e-39 167.5 248 42.7
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 1.6e-39 167.2 234 42.3
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 1.6e-39 167.2 234 42.3
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.3e-38 164.1 235 41.3
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 3.8e-38 162.5 250 40.8
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 8.5e-38 161.4 263 40.3
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 8.5e-38 161.4 250 42.8
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 8.5e-38 161.4 248 43.1
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 8.5e-38 161.4 250 42.0
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 8.5e-38 161.4 188 50.5
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.5e-37 160.6 233 43.8
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 1.9e-37 160.2 250 42.4
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 3.2e-37 159.5 247 41.3
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.2e-37 159.5 250 40.8
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 4.2e-37 159.1 215 44.7
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 5.5e-37 158.7 250 40.4
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 1.2e-36 157.5 191 48.2
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 1.6e-36 157.1 248 41.5
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 2.7e-36 156.4 212 43.9
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.7e-36 156.4 194 46.4
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 3.6e-36 156.0 249 38.6
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 3.6e-36 156.0 233 39.9
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 4.7e-36 155.6 181 49.2
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 4.7e-36 155.6 249 40.2
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 6.1e-36 155.2 228 43.9
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 6.1e-36 155.2 171 51.5
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 6.1e-36 155.2 206 44.2
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 8.0e-36 154.8 248 39.1
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 8.0e-36 154.8 251 40.2
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 8.0e-36 154.8 250 41.6
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 1.4e-35 154.1 248 39.9
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.4e-35 154.1 203 45.8
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.4e-35 154.1 252 40.9
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 2.3e-35 153.3 247 39.3
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 4.0e-35 152.5 248 39.5
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 4.0e-35 152.5 247 38.9
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 4.0e-35 152.5 247 38.9
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 5.2e-35 152.1 249 41.4
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 6.8e-35 151.8 253 40.7
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 8.8e-35 151.4 215 44.2
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 1.5e-34 150.6 194 44.8
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 1.5e-34 150.6 229 41.9
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.5e-34 150.6 248 39.5
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 2.0e-34 150.2 206 42.7
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 2.0e-34 150.2 206 44.2
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 2.6e-34 149.8 250 37.6
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 5.7e-34 148.7 241 39.0
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 1.3e-33 147.5 248 41.1
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 1.3e-33 147.5 250 38.4
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 2.8e-33 146.4 187 45.5
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 2.8e-33 146.4 187 45.5
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 4.8e-33 145.6 216 42.1
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 4.8e-33 145.6 203 44.8
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 4.8e-33 145.6 209 43.5
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 6.3e-33 145.2 240 40.0
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 8.3e-33 144.8 194 43.8
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 8.3e-33 144.8 183 45.4
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 1.4e-32 144.1 201 43.8
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 1.8e-32 143.7 250 38.0
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 1.8e-32 143.7 187 44.4
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 2.4e-32 143.3 215 43.3
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 3.1e-32 142.9 187 44.4
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 3.1e-32 142.9 193 43.0
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 4.1e-32 142.5 201 42.3
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 4.1e-32 142.5 178 45.5
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 5.4e-32 142.1 198 43.9
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 9.1e-32 141.4 187 44.4
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.2e-31 141.0 188 44.1
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 2.7e-31 139.8 188 41.5
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 3.5e-31 139.4 188 44.7
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 4.5e-31 139.0 188 43.6
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 5.9e-31 138.7 203 42.9
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 2.2e-30 136.7 188 44.1
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 2.9e-30 136.3 188 44.1
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 3.8e-30 136.0 196 44.9
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 3.8e-30 136.0 189 45.5
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 5.0e-30 135.6 176 44.3
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 3.2e-29 132.9 188 43.6
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 9.5e-29 131.3 302 33.4
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 1.6e-28 130.6 246 37.4
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 2.1e-28 130.2 173 44.5
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 4.7e-28 129.0 188 43.1
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 6.1e-28 128.6 168 43.5
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 1.4e-27 127.5 191 43.5
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 1.5e-26 124.0 160 45.6
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.3e-25 120.9 99 56.6
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 1.7e-25 120.6 110 61.8
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.7e-25 120.6 222 36.9
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.4e-24 117.5 99 53.5
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 1.4e-24 117.5 99 54.5
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 4.5e-23 112.5 200 38.0
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 1.0e-22 111.3 159 40.3
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 3.8e-22 109.4 194 36.1
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 5.0e-22 109.0 160 38.1
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 1.1e-21 107.8 90 58.9
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 3.3e-21 106.3 90 56.7
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 2.8e-20 103.2 133 46.6
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 1.8e-19 100.5 145 42.8
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 3.0e-19 99.8 166 36.1
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 8.9e-19 98.2 190 38.4
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 4.4e-18 95.9 185 36.2
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 9.8e-18 94.7 99 51.5
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 8.6e-14 81.6 99 47.5
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 3.4e-10 69.7 90 36.7
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 1.7e-09 67.4 81 43.2
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 4.9e-09 65.9 153 31.4
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 1.4e-08 64.3 95 38.9
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.6e-07 60.8 67 58.2
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.6e-07 60.8 67 58.2
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 6.0e-07 58.9 114 39.5


User provided reference genes

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