Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.4e-223 779.2 384 100.0
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 1.5e-217 759.2 384 96.9
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.4e-217 758.1 384 97.4
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.2e-216 755.4 384 96.9
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.5e-214 748.0 406 92.1
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 7.5e-201 703.7 384 88.5
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 3.8e-168 595.1 392 75.0
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 2.8e-163 578.9 395 72.9
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 4.8e-163 578.2 392 74.0
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 4.0e-162 575.1 391 73.9
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 1.9e-159 566.2 387 72.6
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 3.0e-157 558.9 383 72.3
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 5.1e-157 558.1 392 72.4
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 5.1e-157 558.1 391 71.4
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 4.3e-156 555.1 383 72.6
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 1.3e-155 553.5 393 70.7
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 1.4e-154 550.1 393 71.0
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 6.9e-154 547.7 387 70.8
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 7.6e-153 544.3 410 68.5
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 1.3e-152 543.5 391 70.1
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 3.8e-152 542.0 408 67.9
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 5.0e-152 541.6 393 68.4
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 6.5e-152 541.2 388 69.6
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 3.5e-150 535.4 391 68.0
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 4.6e-150 535.0 389 69.7
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 1.0e-149 533.9 409 66.5
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 1.8e-149 533.1 387 69.5
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 3.0e-149 532.3 391 68.0
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 6.7e-149 531.2 365 72.9
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 8.7e-149 530.8 376 71.0
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 1.1e-148 530.4 388 67.8
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.9e-148 529.6 409 65.5
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 1.9e-148 529.6 387 69.0
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 2.5e-148 529.3 362 72.9
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 2.5e-148 529.3 387 69.3
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 5.7e-148 528.1 391 68.0
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 1.6e-147 526.6 388 67.8
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 2.8e-147 525.8 367 70.8
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 6.3e-147 524.6 387 67.4
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 1.1e-146 523.9 393 67.4
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 2.4e-146 522.7 391 67.0
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 3.1e-146 522.3 393 67.4
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 5.3e-146 521.5 391 67.5
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 2.6e-145 519.2 390 67.7
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 2.6e-145 519.2 390 66.7
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 1.3e-144 516.9 390 66.2
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 1.7e-144 516.5 390 67.4
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 5.0e-144 515.0 388 67.0
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 1.1e-143 513.8 390 65.6
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 2.5e-143 512.7 392 67.1
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 3.2e-143 512.3 386 66.8
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 3.2e-143 512.3 345 72.8
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 9.4e-143 510.8 344 73.0
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 2.1e-142 509.6 390 65.1
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 2.7e-142 509.2 393 66.9
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 2.7e-142 509.2 381 66.7
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 2.7e-142 509.2 380 67.1
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 3.6e-142 508.8 387 65.9
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.0e-141 507.3 391 65.5
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 1.0e-141 507.3 393 66.7
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 3.0e-141 505.8 391 67.0
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 3.0e-141 505.8 386 66.1
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 6.7e-141 504.6 399 64.2
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 1.1e-140 503.8 391 65.0
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 1.1e-140 503.8 389 65.0
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 3.3e-140 502.3 379 66.5
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 4.8e-139 498.4 392 65.1
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 6.3e-139 498.0 390 65.4
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 4.1e-138 495.4 390 64.9
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 5.3e-138 495.0 390 64.6
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 7.7e-137 491.1 390 64.4
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 2.9e-136 489.2 392 63.5
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 6.5e-136 488.0 392 64.3
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 1.1e-135 487.3 415 61.4
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 1.9e-135 486.5 391 64.7
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 4.2e-135 485.3 391 63.2
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 7.2e-135 484.6 375 66.1
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 1.2e-134 483.8 378 65.3
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 1.2e-134 483.8 363 66.9
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 3.6e-134 482.3 392 63.3
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 7.9e-134 481.1 345 69.6
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 1.0e-133 480.7 390 63.8
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 1.0e-133 480.7 390 63.8
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 1.5e-132 476.9 329 70.2
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 7.4e-132 474.6 391 62.7
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 1.2e-129 467.2 384 62.8
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 1.3e-128 463.8 377 63.4
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 6.5e-128 461.5 389 62.7
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 3.0e-125 452.6 358 64.5
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 1.5e-124 450.3 389 60.7
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 3.3e-124 449.1 415 57.8
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 1.1e-122 444.1 425 57.4
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 4.5e-121 438.7 349 65.0
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 1.3e-115 420.6 376 58.0
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 1.8e-114 416.8 337 63.2
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 2.9e-112 409.5 322 65.2
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 2.5e-111 406.4 263 73.0
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 1.8e-109 400.2 251 74.5
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 2.6e-108 396.4 344 59.0
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 2.3e-101 373.2 323 59.8
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 1.1e-95 354.4 382 51.3
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.2e-94 350.9 261 67.8
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 6.4e-91 338.6 322 55.0
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 3.2e-90 336.3 262 62.6
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 2.5e-87 326.6 201 75.6
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 1.4e-85 320.9 193 74.1
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 2.5e-79 300.1 163 85.3
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 6.2e-78 295.4 223 66.8
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 4.4e-76 289.3 279 49.8
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.4e-69 267.7 130 97.7
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 1.3e-67 261.2 193 67.4
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 1.4e-66 257.7 188 64.4
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 1.2e-65 254.6 219 57.5
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 2.1e-54 217.2 235 47.2
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 2.1e-49 200.7 113 77.9
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 2.1e-49 200.7 197 48.2
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 1.3e-46 191.4 124 75.0
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 9.3e-42 175.3 133 61.7
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 1.2e-41 174.9 185 53.5
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 1.0e-40 171.8 133 60.9
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 2.5e-39 167.2 131 61.8
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 5.5e-34 149.4 200 43.0
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 5.5e-34 149.4 243 37.9
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 2.4e-29 134.0 84 73.8
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 5.0e-27 126.3 177 44.1
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.1e-26 125.2 215 40.5
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 1.4e-26 124.8 73 78.1
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 3.0e-24 117.1 74 70.3
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 6.7e-24 115.9 109 52.3
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 4.4e-23 113.2 63 79.4
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 7.7e-20 102.4 151 44.4
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.2e-17 95.1 119 47.1
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 5.3e-13 79.7 94 51.1
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 9.1e-13 79.0 45 77.8
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 5.9e-12 76.3 104 43.3
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 6.5e-11 72.8 45 71.1
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 6.1e-09 66.2 64 56.2
Lalb_Chr16g0388221 Lupinus albus HOM05D005612 ORTHO05D007014 2.2e-06 57.8 34 70.6


User provided reference genes

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