Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.6e-256 888.3 469 100.0
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 9.5e-198 693.7 431 89.6
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 7.1e-185 651.0 456 82.5
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.1e-185 651.0 456 82.5
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 6.0e-184 647.9 468 79.5
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.8e-184 647.5 456 82.2
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.4e-171 605.5 431 81.7
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 5.6e-166 588.2 457 75.1
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 9.6e-166 587.4 406 83.7
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 5.8e-155 551.6 454 70.9
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 4.8e-141 505.4 450 65.1
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.5e-139 500.4 458 64.2
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 2.0e-134 483.4 465 62.8
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 9.1e-132 474.6 419 66.8
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 9.1e-132 474.6 432 64.8
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 5.9e-131 471.9 476 60.9
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.7e-130 470.3 489 59.9
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 7.2e-129 464.9 442 62.9
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 3.6e-128 462.6 437 62.0
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 8.0e-128 461.5 394 67.0
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 1.8e-127 460.3 411 65.0
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 1.1e-126 457.6 459 61.2
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 2.6e-126 456.4 430 62.6
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 2.6e-126 456.4 409 64.8
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 1.4e-124 450.7 404 64.6
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 2.6e-123 446.4 412 62.4
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 3.5e-123 446.0 457 58.0
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 1.7e-122 443.7 420 62.4
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 2.2e-122 443.4 423 61.0
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 1.9e-121 440.3 414 61.8
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 4.2e-121 439.1 409 63.1
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 7.2e-121 438.3 410 61.7
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 9.4e-121 438.0 412 61.9
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 1.6e-120 437.2 468 56.4
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 2.1e-120 436.8 392 64.8
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 8.0e-120 434.9 423 58.9
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 1.0e-119 434.5 460 57.0
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 3.0e-119 433.0 429 59.2
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 6.8e-119 431.8 402 62.4
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 8.8e-119 431.4 465 58.5
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 5.7e-118 428.7 424 58.7
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 4.8e-117 425.6 437 57.9
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 4.8e-117 425.6 483 55.5
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.1e-116 424.5 383 64.8
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 1.1e-116 424.5 474 54.4
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 4.1e-116 422.5 413 59.6
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 1.6e-115 420.6 413 59.6
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 2.0e-115 420.2 352 67.0
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 2.2e-114 416.8 437 56.5
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 8.5e-114 414.8 412 58.7
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 8.5e-114 414.8 404 59.4
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 5.5e-113 412.1 454 55.3
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 5.5e-113 412.1 462 55.2
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 7.2e-113 411.8 461 55.1
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 9.4e-113 411.4 394 59.9
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 1.2e-112 411.0 459 55.1
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 6.1e-112 408.7 421 57.7
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 6.1e-112 408.7 468 54.3
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 8.0e-112 408.3 441 56.2
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 1.5e-110 404.1 391 59.3
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 2.0e-110 403.7 422 56.2
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 7.5e-110 401.7 476 51.9
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 1.4e-108 397.5 428 56.1
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 1.4e-108 397.5 428 56.1
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 4.1e-108 396.0 428 56.1
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 4.1e-108 396.0 428 56.1
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 9.1e-108 394.8 471 52.0
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 2.0e-107 393.7 411 56.0
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 2.7e-107 393.3 428 56.3
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 1.7e-106 390.6 428 55.6
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 2.3e-106 390.2 427 54.3
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 3.3e-105 386.3 303 70.6
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 6.1e-104 382.1 414 54.1
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 1.0e-103 381.3 410 53.9
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 7.5e-102 375.2 387 59.4
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 1.3e-98 364.4 403 54.1
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 1.1e-97 361.3 397 52.9
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 1.9e-97 360.5 408 56.4
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 2.5e-97 360.1 361 59.0
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 4.3e-97 359.4 361 56.5
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 9.5e-97 358.2 393 54.5
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 1.6e-91 340.9 454 47.4
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 1.6e-91 340.9 456 48.5
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 4.6e-91 339.3 320 62.5
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 8.0e-88 328.6 313 61.7
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 6.8e-87 325.5 413 50.4
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 1.3e-85 321.2 285 66.0
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 1.7e-85 320.9 457 46.8
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 8.3e-85 318.5 413 47.5
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.2e-83 314.7 463 45.8
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 1.9e-81 307.4 289 61.6
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 4.7e-80 302.8 290 62.1
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 1.2e-78 298.1 313 60.1
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 2.1e-72 277.3 370 48.9
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 1.1e-71 275.0 242 66.9
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 1.8e-71 274.2 346 52.3
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 2.0e-70 270.8 230 67.0
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 7.3e-65 252.3 248 60.9
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 3.6e-64 250.0 243 57.2
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 5.3e-63 246.1 407 41.8
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 6.0e-59 232.6 257 58.4
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 7.3e-57 225.7 292 47.6
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 1.3e-56 224.9 263 53.2
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 9.3e-52 208.8 250 54.0
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 2.7e-51 207.2 359 40.1
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 6.7e-50 202.6 247 50.6
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 3.3e-49 200.3 286 45.1
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 5.6e-49 199.5 351 41.6
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 8.1e-48 195.7 411 35.8
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 4.5e-46 189.9 156 68.6
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 3.8e-45 186.8 247 52.6
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 4.2e-44 183.3 128 75.8
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 3.5e-43 180.3 422 34.4
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 3.7e-40 170.2 236 45.3
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 1.1e-39 168.7 129 69.0
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.0e-37 159.8 116 80.2
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 1.4e-36 158.3 225 45.3
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.5e-36 156.4 139 69.8
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 6.7e-34 149.4 303 37.0
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-33 147.1 238 40.8
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.4e-33 146.0 82 97.6
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 2.2e-32 144.4 118 64.4
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 4.8e-32 143.3 381 33.9
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 3.1e-31 140.6 102 75.5
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 3.1e-31 140.6 132 68.2
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 2.6e-30 137.5 103 73.8
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 2.9e-29 134.0 305 30.5
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 3.3e-25 120.6 324 33.0
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.5e-22 111.7 104 61.5
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 7.7e-22 109.4 362 29.8
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 7.7e-22 109.4 319 28.8
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 7.7e-22 109.4 149 45.6
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.0e-21 109.0 296 29.1
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 1.4e-20 105.1 82 72.0
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 7.2e-20 102.8 95 63.2
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 9.4e-20 102.4 68 83.8
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 2.1e-19 101.3 168 42.9
FAN01G2288 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.9e-19 99.4 54 94.4
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 1.3e-16 92.0 62 75.8
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 1.4e-15 88.6 140 41.4
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 5.0e-13 80.1 84 57.1
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 6.5e-13 79.7 59 71.2
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 1.5e-12 78.6 97 52.6
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 5.5e-12 76.6 156 33.3
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 6.1e-11 73.2 154 34.4
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 2.3e-10 71.2 88 50.0
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 3.3e-09 67.4 119 38.7
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 1.7e-08 65.1 144 35.4
Ca_12794_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 8.2e-08 62.8 54 63.0
CDE08G0076 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 2.4e-07 61.2 35 82.9
FAN19G1644 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.4e-07 61.2 59 59.3
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 2.4e-07 61.2 141 33.3
SEGI_13629 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 4.1e-07 60.5 52 61.5
MELO3C034937.2 Cucumis melo HOM05D005062 ORTHO05D006410 3.5e-06 57.4 68 54.4


User provided reference genes

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