Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2675 Fragaria x ananassa HOM05D015912 ORTHO05D029635 1.1e-113 413.3 202 100.0
FAN19G0607 Fragaria x ananassa HOM05D015912 ORTHO05D029635 5.9e-112 407.5 202 98.5
FvH4_1g21610 Fragaria vesca HOM05D015912 ORTHO05D029635 1.3e-111 406.4 202 98.0
FvH4_1g21620 Fragaria vesca HOM05D015912 ORTHO05D045714 3.2e-49 199.1 182 53.8
FAN23G1008 Fragaria x ananassa HOM05D015912 ORTHO05D045714 4.6e-48 195.3 181 53.0
Manes.09G046600 Manihot esculenta HOM05D002687 ORTHO05D002052 5.1e-23 112.1 183 35.5
Prupe.7G097000 Prunus persica HOM05D002687 ORTHO05D002052 6.7e-23 111.7 191 37.2
Cfa016686 Carpinus fangiana HOM05D002687 ORTHO05D002052 4.3e-22 109.0 185 35.7
CiPaw.10G094600 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.1e-20 104.4 182 32.4
CiPaw.09G020300 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.8e-20 103.6 185 31.9
FvH4_6g20177 Fragaria vesca HOM05D002687 ORTHO05D002052 6.9e-20 101.7 168 33.9
FAN14G3199 Fragaria x ananassa HOM05D029328 ORTHO05D002052 6.9e-20 101.7 168 33.9
AUR62031792 Chenopodium quinoa HOM05D002687 ORTHO05D002052 1.2e-19 100.9 183 33.3
MD12G1038800 Malus domestica HOM05D002687 ORTHO05D002052 1.5e-19 100.5 183 35.5
Cpa.g.sc104.46 Carica papaya HOM05D002687 ORTHO05D002052 2.0e-19 100.1 193 31.1
AUR62023990 Chenopodium quinoa HOM05D002687 ORTHO05D002052 5.8e-19 98.6 184 31.5
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 1.7e-18 97.1 190 32.6
Prupe.8G108100 Prunus persica HOM05D041935 ORTHO05D022631 2.9e-18 96.3 173 34.1
AUR62001543 Chenopodium quinoa HOM05D002687 ORTHO05D002052 1.4e-17 94.0 183 30.1
ATR0772G197 Amborella trichopoda HOM05D002687 ORTHO05D002052 3.2e-17 92.8 186 30.6
Ciclev10012623m.g Citrus clementina HOM05D002687 ORTHO05D002052 5.5e-17 92.0 189 33.9
FAN23G2755 Fragaria x ananassa HOM05D015912 ORTHO05D206108 9.3e-17 91.3 77 53.2
MBI01_g04539_MAGBIO Magnolia biondii HOM05D002687 ORTHO05D002052 9.3e-17 91.3 183 27.3
MD14G1037500 Malus domestica HOM05D002687 ORTHO05D002052 1.2e-16 90.9 187 33.2
RcHm_v2.0_Chr3g0475711 Rosa chinensis HOM05D002687 ORTHO05D002052 3.5e-16 89.4 165 32.1
FAN19G1551 Fragaria x ananassa HOM05D015912 ORTHO05D002052 1.0e-15 87.8 67 56.7
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.0e-15 87.8 187 28.9
EL10Ac7g16313 Beta vulgaris HOM05D002687 ORTHO05D002052 1.3e-15 87.4 181 30.4
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 1.3e-15 87.4 182 30.8
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 1.3e-15 87.4 182 30.8
FvH4_6g17371 Fragaria vesca HOM05D025439 ORTHO05D022631 1.8e-15 87.0 172 29.7
FAN05G0235 Fragaria x ananassa HOM05D025439 ORTHO05D022631 3.0e-15 86.3 167 29.9
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 3.0e-15 86.3 184 29.9
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 3.9e-15 85.9 175 30.3
Oeu009048.1 Olea europaea HOM05D002687 ORTHO05D002052 8.7e-15 84.7 184 29.9
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.5e-14 84.0 168 26.8
Rhsim13G0195600 Rhododendron simsii HOM05D002687 ORTHO05D002052 1.9e-14 83.6 172 30.8
CiPaw.04G111600 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.5e-14 83.2 182 29.7
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 2.5e-14 83.2 184 27.7
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 2.5e-14 83.2 184 28.8
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 3.3e-14 82.8 188 29.3
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 4.3e-14 82.4 188 27.7
FAN10G3605 Fragaria x ananassa HOM05D020649 ORTHO05D002052 4.3e-14 82.4 174 33.9
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 4.3e-14 82.4 188 28.7
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 4.3e-14 82.4 168 28.6
Migut.N02460 Erythranthe guttata HOM05D002687 ORTHO05D002052 5.7e-14 82.0 184 27.7
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 7.4e-14 81.6 168 29.8
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 7.4e-14 81.6 177 29.4
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 9.6e-14 81.3 182 29.1
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 9.6e-14 81.3 182 29.7
Ca_09050_v3 Cicer arietinum L. HOM05D002687 ORTHO05D002052 1.3e-13 80.9 177 32.2
Oeu035584.1 Olea europaea HOM05D002687 ORTHO05D002052 1.3e-13 80.9 183 27.9
FvH4_7g02250 Fragaria vesca HOM05D020649 ORTHO05D046499 2.1e-13 80.1 152 35.5
FAN06G4035 Fragaria x ananassa HOM05D020649 ORTHO05D046499 3.7e-13 79.3 152 35.5
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 4.8e-13 79.0 184 26.1
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 4.8e-13 79.0 197 31.5
Prupe.1G192300 Prunus persica HOM05D028866 ORTHO05D335567 4.8e-13 79.0 140 36.4
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 6.2e-13 78.6 181 32.6
Sp4g10070 Schrenkiella parvula HOM05D002687 ORTHO05D002052 6.2e-13 78.6 189 28.6
Solyc06g074050.3 Solanum lycopersicum HOM05D002687 ORTHO05D002052 1.8e-12 77.0 187 28.9
PGSC0003DMG400005897 Solanum tuberosum HOM05D002687 ORTHO05D002052 1.8e-12 77.0 185 29.2
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 2.4e-12 76.6 183 26.8
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 2.4e-12 76.6 143 30.1
Sopen06g030470 Solanum pennellii HOM05D002687 ORTHO05D002052 2.4e-12 76.6 187 28.9
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 3.1e-12 76.3 169 26.6
CAN.G1463.1 Capsicum annuum HOM05D002687 ORTHO05D002065 5.3e-12 75.5 187 26.7
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 5.3e-12 75.5 168 25.6
Carub.0001s0701 Capsella rubella HOM05D002687 ORTHO05D002052 6.9e-12 75.1 184 27.2
SGA_v2.0_scaffold100G29631 Striga asiatica HOM05D002687 ORTHO05D002052 6.9e-12 75.1 185 30.8
Thhalv10002076m.g Eutrema salsugineum HOM05D002687 ORTHO05D002052 9.0e-12 74.7 194 27.8
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 1.2e-11 74.3 191 25.7
Prupe.1G193600 Prunus persica HOM05D028866 ORTHO05D334605 2.0e-11 73.6 135 34.1
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 2.0e-11 73.6 184 26.1
RcHm_v2.0_Chr3g0471581 Rosa chinensis HOM05D025439 ORTHO05D022631 2.6e-11 73.2 183 29.5
MSTRG.12384 Avicennia marina HOM05D002687 ORTHO05D002052 3.4e-11 72.8 166 28.9
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 3.4e-11 72.8 190 28.4
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 3.4e-11 72.8 190 25.3
Prupe.1G192400 Prunus persica HOM05D028866 ORTHO05D336417 3.4e-11 72.8 138 34.8
Nitab4.5_0000380g0140 Nicotiana tabacum HOM05D002687 ORTHO05D002052 5.8e-11 72.0 190 26.3
Nitab4.5_0000657g0070 Nicotiana tabacum HOM05D002687 ORTHO05D002052 7.6e-11 71.6 190 26.3
unitig_8.g3658 Utricularia gibba HOM05D002687 ORTHO05D002052 7.6e-11 71.6 173 27.7
Prupe.1G194000 Prunus persica HOM05D028866 ORTHO05D335152 1.0e-10 71.2 113 37.2
unitig_27.g25123 Utricularia gibba HOM05D000738 ORTHO05D000675 1.7e-10 70.5 183 24.6
BcaB06g28135 Brassica carinata HOM05D002687 ORTHO05D002052 2.2e-10 70.1 189 27.0
PGR119G0132 Punica granatum HOM05D002687 ORTHO05D002052 2.2e-10 70.1 191 25.1
Psat0s3916g0200 Pisum sativum HOM05D002687 ORTHO05D002052 2.9e-10 69.7 164 28.7
Manes.01G175800 Manihot esculenta HOM05D017088 ORTHO05D029635 3.8e-10 69.3 191 27.7
BcaC02g08259 Brassica carinata HOM05D002687 ORTHO05D002052 5.0e-10 68.9 189 26.5
C04p56620 Brassica napus HOM05D002687 ORTHO05D002052 5.0e-10 68.9 189 26.5
BolC4t27189H Brassica oleracea HOM05D002687 ORTHO05D002052 5.0e-10 68.9 189 26.5
BraA04t17653Z Brassica rapa HOM05D002687 ORTHO05D002052 5.0e-10 68.9 189 26.5
Medtr7g106100 Medicago truncatula HOM05D002687 ORTHO05D002052 5.0e-10 68.9 176 27.8
TPR.G35571 Trifolium pratense HOM05D002687 ORTHO05D002052 5.0e-10 68.9 177 27.1
unitig_899.g15378 Utricularia gibba HOM05D002687 ORTHO05D002052 5.0e-10 68.9 186 25.3
Nn2g14281 Nelumbo nucifera HOM05D002687 ORTHO05D002052 6.5e-10 68.6 188 24.5
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.1e-09 67.8 166 30.1
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 1.4e-09 67.4 187 27.3
MSTRG.21015 Avicennia marina HOM05D002687 ORTHO05D002052 1.9e-09 67.0 183 25.1
A04p20800 Brassica napus HOM05D002687 ORTHO05D002052 4.2e-09 65.9 189 25.9
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 4.2e-09 65.9 191 24.6
Aa31LG5G8690 Aethionema arabicum HOM05D002687 ORTHO05D002052 7.1e-09 65.1 190 24.2
Glyma.07G009700 Glycine max HOM05D002137 ORTHO05D002144 9.3e-09 64.7 181 23.8
Potri.009G019800 Populus trichocarpa HOM05D002687 ORTHO05D002052 9.3e-09 64.7 189 27.0
Oeu026755.1 Olea europaea HOM05D002137 ORTHO05D002144 1.6e-08 63.9 185 21.6
FvH4_3g26690 Fragaria vesca HOM05D002687 ORTHO05D002052 2.7e-08 63.2 185 25.9
FAN03G2851 Fragaria x ananassa HOM05D020649 ORTHO05D002052 2.7e-08 63.2 131 35.1
FAN11G1248 Fragaria x ananassa HOM05D002687 ORTHO05D002052 3.5e-08 62.8 185 25.9
CSS0036580 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 4.6e-08 62.4 185 28.1
AT2G27260 Arabidopsis thaliana HOM05D002687 ORTHO05D002052 7.9e-08 61.6 184 24.5
DCAR_013440 Daucus carota HOM05D002687 ORTHO05D002052 1.0e-07 61.2 184 25.5
Glyma.13G313600 Glycine max HOM05D002687 ORTHO05D002052 1.3e-07 60.8 192 25.0
RcHm_v2.0_Chr5g0048091 Rosa chinensis HOM05D002687 ORTHO05D002052 1.3e-07 60.8 185 24.9
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 1.8e-07 60.5 190 25.8
arahy.Tifrunner.gnm1.ann1.AI123M Arachis hypogaea HOM05D002687 ORTHO05D002052 3.0e-07 59.7 191 26.2
Dinv31751 Davidia involucrata HOM05D002687 ORTHO05D002052 3.0e-07 59.7 139 28.1
FvH4_6g15981 Fragaria vesca HOM05D041935 ORTHO05D045610 3.0e-07 59.7 164 29.3
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 3.9e-07 59.3 187 24.6
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.9e-07 59.3 172 25.6
FvH4_2g25004 Fragaria vesca HOM05D031442 ORTHO05D045543 5.1e-07 58.9 177 28.2
FvH4_1g15100 Fragaria vesca HOM05D020842 ORTHO05D035472 6.7e-07 58.5 166 28.3
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 6.7e-07 58.5 194 23.7
Lalb_Chr20g0122491 Lupinus albus HOM05D000733 ORTHO05D000649 6.7e-07 58.5 155 27.7
FAN21G1704 Fragaria x ananassa HOM05D002687 ORTHO05D002052 8.7e-07 58.2 187 25.1
CsaV3_6G038540 Cucumis sativus L. HOM05D002687 ORTHO05D002052 1.1e-06 57.8 192 26.6
FAN16G1005 Fragaria x ananassa HOM05D002687 ORTHO05D002052 1.1e-06 57.8 185 24.9
FAN24G3102 Fragaria x ananassa HOM05D031442 ORTHO05D046342 1.5e-06 57.4 189 27.5
unitig_699.g19454 Utricularia gibba HOM05D002687 ORTHO05D002052 2.5e-06 56.6 125 28.0
Glyma.11G203000 Glycine max HOM05D000973 ORTHO05D000652 3.3e-06 56.2 136 25.7
MSTRG.21082 Avicennia marina HOM05D000980 ORTHO05D000649 4.3e-06 55.8 176 25.6
Ciclev10012533m.g Citrus clementina HOM05D000973 ORTHO05D000652 4.3e-06 55.8 108 31.5
CiPaw.06G041100 Carya illinoinensis HOM05D000733 ORTHO05D000644 5.7e-06 55.5 111 30.6
VMungo0331G0439 Vigna mungo HOM05D002137 ORTHO05D002144 5.7e-06 55.5 180 21.7
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 7.4e-06 55.1 190 23.2
FAN15G1665 Fragaria x ananassa HOM05D002137 ORTHO05D002144 7.4e-06 55.1 203 23.2
FAN24G0714 Fragaria x ananassa HOM05D002137 ORTHO05D002144 7.4e-06 55.1 203 23.2
Glyma.18G047800 Glycine max HOM05D000973 ORTHO05D000652 7.4e-06 55.1 137 27.0


User provided reference genes

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