Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.2e-69 266.5 145 100.0
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.2e-60 235.7 132 97.7
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.2e-60 235.7 132 97.7
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.4e-59 232.3 132 96.2
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 8.6e-57 223.8 132 94.7
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 2.4e-35 152.5 141 68.8
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 5.1e-33 144.8 139 63.3
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 4.3e-32 141.7 148 65.5
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 5.5e-27 124.8 140 59.3
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 2.7e-26 122.5 147 56.5
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 2.7e-26 122.5 147 56.5
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 3.0e-25 119.0 150 52.7
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 3.3e-24 115.5 145 53.1
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 3.3e-24 115.5 143 56.6
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 3.3e-24 115.5 144 56.9
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 9.6e-24 114.0 135 53.3
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 3.7e-23 112.1 135 57.0
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 1.1e-22 110.5 130 56.2
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 1.8e-22 109.8 129 53.5
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 4.0e-22 108.6 136 53.7
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 5.3e-22 108.2 143 55.2
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 5.3e-22 108.2 143 55.2
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 6.9e-22 107.8 130 54.6
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 2.0e-21 106.3 140 52.9
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.7e-20 103.2 128 50.8
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.9e-20 102.4 143 52.4
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.9e-19 99.8 128 50.8
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.9e-19 99.8 128 50.8
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 5.5e-19 98.2 130 50.0
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 5.5e-19 98.2 130 50.0
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 9.3e-19 97.4 158 48.7
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 2.1e-18 96.3 130 51.5
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 3.5e-18 95.5 134 52.2
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 3.5e-18 95.5 133 52.6
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.5e-18 95.5 130 49.2
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 4.6e-18 95.1 134 50.7
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 1.3e-17 93.6 128 53.9
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 1.8e-17 93.2 139 46.0
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 2.3e-17 92.8 139 48.2
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 3.0e-17 92.4 144 45.8
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 3.9e-17 92.0 147 48.3
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 5.1e-17 91.7 137 49.6
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 6.7e-17 91.3 149 47.0
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 6.7e-17 91.3 141 45.4
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 1.1e-16 90.5 136 50.7
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 1.5e-16 90.1 138 49.3
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 1.5e-16 90.1 131 48.9
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 1.9e-16 89.7 149 45.6
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 2.5e-16 89.4 133 51.9
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 3.3e-16 89.0 134 46.3
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 7.4e-16 87.8 139 48.2
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 9.7e-16 87.4 140 45.7
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 1.6e-15 86.7 139 45.3
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 1.6e-15 86.7 140 46.4
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.6e-15 86.7 160 46.9
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 2.2e-15 86.3 138 48.6
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 2.2e-15 86.3 146 45.2
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 3.7e-15 85.5 140 47.1
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 4.8e-15 85.1 155 47.7
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 1.4e-14 83.6 137 46.7
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 2.4e-14 82.8 141 46.1
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.1e-14 82.4 151 45.0
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 4.1e-14 82.0 121 50.4
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 5.3e-14 81.6 140 44.3
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 9.0e-14 80.9 133 48.1
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 9.0e-14 80.9 155 43.9
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 1.2e-13 80.5 134 43.3
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 3.4e-13 79.0 148 44.6
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 3.4e-13 79.0 168 39.9
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 4.5e-13 78.6 137 42.3
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 4.5e-13 78.6 118 48.3
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 5.9e-13 78.2 151 43.7
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 1.3e-12 77.0 118 49.2
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 1.3e-12 77.0 131 49.6
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 1.7e-12 76.6 140 45.7
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 1.7e-12 76.6 128 48.4
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 1.7e-12 76.6 140 45.7
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 2.2e-12 76.3 135 44.4
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 2.2e-12 76.3 157 38.9
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 2.2e-12 76.3 132 46.2
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 2.9e-12 75.9 169 36.7
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 2.9e-12 75.9 133 43.6
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 2.9e-12 75.9 169 38.5
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 3.8e-12 75.5 79 58.2
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 3.8e-12 75.5 161 39.8
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 3.8e-12 75.5 169 37.9
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 5.0e-12 75.1 143 43.4
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 5.0e-12 75.1 145 42.1
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 5.0e-12 75.1 141 42.6
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 5.0e-12 75.1 141 42.6
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 5.0e-12 75.1 150 38.7
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 5.0e-12 75.1 158 40.5
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 6.5e-12 74.7 143 43.4
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 6.5e-12 74.7 147 41.5
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 6.5e-12 74.7 169 37.9
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 8.5e-12 74.3 170 40.0
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 8.5e-12 74.3 150 42.7
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.1e-11 73.9 134 42.5
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 1.4e-11 73.6 161 35.4
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 1.9e-11 73.2 161 38.5
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 1.9e-11 73.2 161 38.5
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 3.2e-11 72.4 141 40.4
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 7.2e-11 71.2 155 37.4
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 7.2e-11 71.2 151 42.4
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 7.2e-11 71.2 167 38.9
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 7.2e-11 71.2 144 41.0
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 9.4e-11 70.9 150 42.0
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.1e-10 69.7 157 38.2
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.1e-10 69.7 161 38.5
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 2.7e-10 69.3 162 35.2
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 3.6e-10 68.9 129 45.0
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 4.6e-10 68.6 146 39.7
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 6.1e-10 68.2 144 39.6
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 1.0e-09 67.4 141 41.8
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 1.8e-09 66.6 139 37.4
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.8e-09 66.6 149 38.9
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 2.3e-09 66.2 39 79.5
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.3e-09 66.2 166 34.3
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 3.0e-09 65.9 138 39.9
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 3.9e-09 65.5 147 43.5
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 3.9e-09 65.5 147 38.1
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 3.9e-09 65.5 162 34.0
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 5.1e-09 65.1 151 39.7
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 5.1e-09 65.1 149 40.9
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 8.8e-09 64.3 147 38.8
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 8.8e-09 64.3 153 39.2
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.5e-08 63.5 145 39.3
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.0e-08 63.2 159 42.1
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 2.0e-08 63.2 127 40.9
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 3.3e-08 62.4 77 49.4
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 3.3e-08 62.4 42 76.2
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 5.7e-08 61.6 59 57.6
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 5.7e-08 61.6 141 39.0
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.2e-07 59.7 39 74.4
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 3.7e-07 58.9 71 49.3
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 8.2e-07 57.8 130 37.7
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.1e-06 57.4 108 43.5
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 4.1e-06 55.5 152 36.2
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 5.3e-06 55.1 146 35.6
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 6.9e-06 54.7 151 32.5
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 6.9e-06 54.7 139 36.7


User provided reference genes

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