Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2642 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.0e-64 250.0 134 100.0
FvH4_1g19631 Fragaria vesca HOM05D003192 ORTHO05D003596 1.0e-59 233.4 133 94.0
FAN19G3065 Fragaria x ananassa HOM05D003192 ORTHO05D003596 2.9e-59 231.9 133 93.2
FAN26G1555 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.1e-58 229.9 133 92.5
FAN28G2653 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.2e-55 219.9 133 91.0
RcHm_v2.0_Chr2g0111201 Rosa chinensis HOM05D003192 ORTHO05D003596 9.8e-55 216.9 133 87.2
Prupe.6G201700 Prunus persica HOM05D003192 ORTHO05D003596 7.0e-45 184.1 133 73.7
Haze_03871 Corylus avellana HOM05D003192 ORTHO05D003596 2.9e-38 162.2 133 66.2
Cfa006881 Carpinus fangiana HOM05D003192 ORTHO05D003596 4.9e-38 161.4 133 66.2
Dinv13601 Davidia involucrata HOM05D003192 ORTHO05D003596 4.6e-36 154.8 133 62.4
CiPaw.08G140100 Carya illinoinensis HOM05D003192 ORTHO05D003596 5.6e-34 147.9 133 61.7
Manes.13G100000 Manihot esculenta HOM05D003192 ORTHO05D003596 1.4e-32 143.3 131 58.0
Potri.001G415800 Populus trichocarpa HOM05D003192 ORTHO05D003596 1.8e-32 142.9 131 56.5
Ciclev10024755m.g Citrus clementina HOM05D003192 ORTHO05D003596 3.1e-32 142.1 131 60.3
Atru.chr3.1246 Acer truncatum HOM05D003192 ORTHO05D003596 4.0e-32 141.7 131 62.6
CANSAT01G3047 Cannabis sativa HOM05D003192 ORTHO05D003596 4.4e-31 138.3 132 53.0
Duzib147G1583 Durio zibethinus HOM05D003192 ORTHO05D003596 2.2e-30 136.0 131 58.8
Cc07_g14090 Coffea canephora HOM05D003192 ORTHO05D003596 2.9e-30 135.6 133 56.4
Sabra16G0282500 Salix brachista HOM05D003192 ORTHO05D003596 3.7e-30 135.2 131 55.7
Potri.011G131500 Populus trichocarpa HOM05D003192 ORTHO05D003596 1.1e-29 133.7 125 57.6
Actinidia06514 Actinidia chinensis HOM05D003192 ORTHO05D003596 1.2e-28 130.2 132 53.0
Actinidia25308 Actinidia chinensis HOM05D003192 ORTHO05D003596 2.7e-28 129.0 129 54.3
TAR625G0274 Trochodendron aralioides HOM05D003192 ORTHO05D003596 6.0e-28 127.9 132 54.5
Gohir.D11G216300 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.0e-27 127.1 129 57.4
TWI77G0115 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 1.3e-27 126.7 131 55.0
Gohir.D11G053800 Gossypium hirsutum HOM05D003192 ORTHO05D003596 2.3e-27 125.9 130 54.6
Sabra11G0118600 Salix brachista HOM05D003192 ORTHO05D003596 3.0e-27 125.6 125 56.8
Gorai.007G058900 Gossypium raimondii HOM05D003192 ORTHO05D003596 3.9e-27 125.2 130 53.8
Gorai.007G232500 Gossypium raimondii HOM05D003192 ORTHO05D003596 1.1e-26 123.6 129 57.4
MSTRG.15688 Avicennia marina HOM05D003192 ORTHO05D003596 1.9e-26 122.9 133 51.9
Gohir.A11G050500 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.9e-26 122.9 130 54.6
Nn5g29883 Nelumbo nucifera HOM05D003192 ORTHO05D003596 1.9e-26 122.9 126 52.4
TAR381G0021 Trochodendron aralioides HOM05D003192 ORTHO05D003596 1.9e-26 122.9 131 55.7
Glyma.18G147000 Glycine max HOM05D003192 ORTHO05D003596 2.5e-26 122.5 131 50.4
Gohir.A02G144501 Gossypium hirsutum HOM05D003192 ORTHO05D003596 2.5e-26 122.5 131 52.7
Gohir.A11G207000 Gossypium hirsutum HOM05D003192 ORTHO05D003596 3.3e-26 122.1 129 55.8
Gorai.003G037800 Gossypium raimondii HOM05D003192 ORTHO05D003596 3.3e-26 122.1 131 52.7
CSS0015283 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 5.6e-26 121.3 133 50.4
QL06p035789 Quercus lobata HOM05D003192 ORTHO05D003596 1.2e-25 120.2 133 54.9
CsaV3_6G044990 Cucumis sativus L. HOM05D003192 ORTHO05D003596 1.6e-25 119.8 131 49.6
Solyc11g010620.3 Solanum lycopersicum HOM05D003192 ORTHO05D003596 2.1e-25 119.4 133 49.6
Sopen11g005420 Solanum pennellii HOM05D003192 ORTHO05D003596 2.8e-25 119.0 133 48.9
QL11p025213 Quercus lobata HOM05D003192 ORTHO05D003596 6.2e-25 117.9 131 49.6
Cfa005735 Carpinus fangiana HOM05D003192 ORTHO05D003596 1.4e-24 116.7 133 49.6
Gohir.D03G036033 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.4e-24 116.7 131 51.9
Eucgr.I00559 Eucalyptus grandis HOM05D003192 ORTHO05D003596 1.8e-24 116.3 132 47.0
MD01G1039400 Malus domestica HOM05D003192 ORTHO05D003596 2.3e-24 115.9 73 76.7
SGA_v2.0_scaffold115G32126 Striga asiatica HOM05D003192 ORTHO05D003596 2.3e-24 115.9 130 46.9
Peaxi162Scf00191g00034 Petunia axillaris HOM05D003192 ORTHO05D003596 6.8e-24 114.4 131 48.1
VMungo0251G1378 Vigna mungo HOM05D003192 ORTHO05D003596 8.9e-24 114.0 131 48.9
Prupe.8G069900 Prunus persica HOM05D003192 ORTHO05D003596 1.5e-23 113.2 133 48.9
MELO3C007714.2 Cucumis melo HOM05D003192 ORTHO05D003596 3.4e-23 112.1 131 48.1
Aqoxy5G01385 Aquilegia oxysepala HOM05D003192 ORTHO05D003596 4.4e-23 111.7 133 50.4
BcaB03g12309 Brassica carinata HOM05D003192 ORTHO05D003596 4.4e-23 111.7 129 50.4
Thhalv10027141m.g Eutrema salsugineum HOM05D003192 ORTHO05D003596 5.8e-23 111.3 129 48.8
CSS0015843 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 7.5e-23 110.9 133 48.9
ClCG01G018360 Citrullus lanatus HOM05D003192 ORTHO05D003596 9.8e-23 110.5 131 47.3
Dinv24148 Davidia involucrata HOM05D003192 ORTHO05D003596 1.3e-22 110.2 133 49.6
MD05G1047500 Malus domestica HOM05D003192 ORTHO05D003596 1.3e-22 110.2 133 48.1
MD10G1054400 Malus domestica HOM05D003192 ORTHO05D003596 4.9e-22 108.2 133 47.4
Sed0023170 Sechium edule HOM05D003192 ORTHO05D003596 4.9e-22 108.2 131 46.6
PSO210G4022 Papaver somniferum HOM05D003192 ORTHO05D003596 6.4e-22 107.8 133 44.4
PSO170G5608 Papaver somniferum HOM05D003192 ORTHO05D003596 8.3e-22 107.5 133 44.4
Psat4g119640 Pisum sativum HOM05D003192 ORTHO05D003596 8.3e-22 107.5 131 45.0
A08p23070 Brassica napus HOM05D003192 ORTHO05D003596 1.1e-21 107.1 129 48.1
CiPaw.05G029500 Carya illinoinensis HOM05D003192 ORTHO05D003596 1.1e-21 107.1 133 45.9
BraA08t34266Z Brassica rapa HOM05D003192 ORTHO05D003596 1.4e-21 106.7 133 46.6
Migut.K00798 Erythranthe guttata HOM05D003192 ORTHO05D003596 3.2e-21 105.5 132 47.0
Lalb_Chr05g0228511 Lupinus albus HOM05D003192 ORTHO05D003596 4.1e-21 105.1 131 45.0
CSS0047518 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 5.4e-21 104.8 133 47.4
Solyc10g047540.3 Solanum lycopersicum HOM05D003192 ORTHO05D003596 5.4e-21 104.8 133 46.6
Sopen10g017840 Solanum pennellii HOM05D003192 ORTHO05D003596 5.4e-21 104.8 133 46.6
EL10Ac9g22072 Beta vulgaris HOM05D003192 ORTHO05D003596 7.1e-21 104.4 120 47.5
Sp7g35710 Schrenkiella parvula HOM05D003192 ORTHO05D003596 7.1e-21 104.4 129 47.3
PGR031G3296 Punica granatum HOM05D003192 ORTHO05D003596 1.2e-20 103.6 133 45.1
ECA238G4297 Erigeron canadensis HOM05D003192 ORTHO05D003596 1.6e-20 103.2 132 43.2
Sed0023722 Sechium edule HOM05D003192 ORTHO05D003596 1.6e-20 103.2 131 42.0
BcaC01g00350 Brassica carinata HOM05D003192 ORTHO05D003596 2.1e-20 102.8 129 48.8
MBI16_g12462_MAGBIO Magnolia biondii HOM05D003192 ORTHO05D003596 2.1e-20 102.8 107 53.3
Carub.0007s0215 Capsella rubella HOM05D003192 ORTHO05D003596 2.7e-20 102.4 129 43.4
BolC3t20120H Brassica oleracea HOM05D003192 ORTHO05D003596 4.6e-20 101.7 129 48.8
Duzib187G1957 Durio zibethinus HOM05D003192 ORTHO05D003596 4.6e-20 101.7 131 48.1
FvH4_2g11711 Fragaria vesca HOM05D003192 ORTHO05D003596 4.6e-20 101.7 129 46.5
Lj5C230T2 Lonicera japonica HOM05D003192 ORTHO05D003596 4.6e-20 101.7 133 48.1
FAN24G0742 Fragaria x ananassa HOM05D003192 ORTHO05D003596 6.0e-20 101.3 129 45.7
Phvul.003G289000 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 6.0e-20 101.3 131 43.5
PGSC0003DMG400037454 Solanum tuberosum HOM05D003192 ORTHO05D003596 6.0e-20 101.3 133 45.1
Aa31LG6G15020 Aethionema arabicum HOM05D003192 ORTHO05D003596 1.0e-19 100.5 129 43.4
AT4G38062 Arabidopsis thaliana HOM05D003192 ORTHO05D003596 1.0e-19 100.5 129 43.4
C03p78760 Brassica napus HOM05D003192 ORTHO05D003596 1.0e-19 100.5 129 48.1
Haze_10522 Corylus avellana HOM05D003192 ORTHO05D003596 1.0e-19 100.5 120 47.5
AL7G12570 Arabidopsis lyrata HOM05D003192 ORTHO05D003596 1.3e-19 100.1 129 45.0
Nitab4.5_0004153g0070 Nicotiana tabacum HOM05D003192 ORTHO05D003596 1.3e-19 100.1 133 42.1
Nitab4.5_0008998g0020 Nicotiana tabacum HOM05D003192 ORTHO05D003596 1.7e-19 99.8 131 45.8
DCAR_014184 Daucus carota HOM05D003192 ORTHO05D003596 2.3e-19 99.4 132 43.2
QL11p025224 Quercus lobata HOM05D003192 ORTHO05D003596 3.9e-19 98.6 131 42.7
RcHm_v2.0_Chr6g0271001 Rosa chinensis HOM05D003192 ORTHO05D003596 3.9e-19 98.6 129 42.6
HanXRQChr11g0346961 Helianthus annuus HOM05D003192 ORTHO05D003596 6.6e-19 97.8 132 40.2
Rhsim10G0172900 Rhododendron simsii HOM05D003192 ORTHO05D003596 6.6e-19 97.8 133 44.4
Atru.chr6.1263 Acer truncatum HOM05D003192 ORTHO05D003596 8.6e-19 97.4 133 45.1
THA.LOC104807671 Tarenaya hassleriana HOM05D003192 ORTHO05D003596 8.6e-19 97.4 131 45.0
Nitab4.5_0002017g0020 Nicotiana tabacum HOM05D003192 ORTHO05D003596 1.1e-18 97.1 133 44.4
Actinidia02392 Actinidia chinensis HOM05D003192 ORTHO05D003596 1.5e-18 96.7 133 43.6
MSTRG.20280 Avicennia marina HOM05D003192 ORTHO05D003596 3.3e-18 95.5 130 43.8
Thecc.01G090500 Theobroma cacao HOM05D003192 ORTHO05D003596 3.3e-18 95.5 131 47.3
Migut.B00551 Erythranthe guttata HOM05D003192 ORTHO05D003596 4.3e-18 95.1 129 42.6
Glyma.08G279600 Glycine max HOM05D003192 ORTHO05D003596 1.6e-17 93.2 131 41.2
Atru.chr6.1256 Acer truncatum HOM05D003192 ORTHO05D003596 6.2e-17 91.3 133 43.6
AUR62027110 Chenopodium quinoa HOM05D003192 ORTHO05D003596 8.1e-17 90.9 133 41.4
ECA233G2454 Erigeron canadensis HOM05D000169 ORTHO05D003596 8.1e-17 90.9 133 39.1
SGA_v2.0_scaffold83G26376 Striga asiatica HOM05D003192 ORTHO05D003596 1.1e-16 90.5 132 40.9
AUR62012886 Chenopodium quinoa HOM05D003192 ORTHO05D003596 1.4e-16 90.1 133 41.4
Ca_22609_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 1.8e-16 89.7 131 40.5
Lj6g0024173 Lotus japonicus HOM05D003192 ORTHO05D003596 3.1e-16 89.0 131 42.0
Medtr8g471150 Medicago truncatula HOM05D003192 ORTHO05D003596 6.8e-16 87.8 131 38.9
Glyma.13G256600 Glycine max HOM05D003192 ORTHO05D003596 8.9e-16 87.4 129 41.1
Manes.10G098500 Manihot esculenta HOM05D003192 ORTHO05D003596 8.9e-16 87.4 133 39.1
PGSC0003DMG400016132 Solanum tuberosum HOM05D003192 ORTHO05D003596 1.5e-15 86.7 133 40.6
CARHR246480 Cardamine hirsuta HOM05D003192 ORTHO05D003596 2.0e-15 86.3 123 41.5
Ah.01g007410 Amaranthus hybridus HOM05D003192 ORTHO05D003596 2.6e-15 85.9 108 42.6
Lj2g0008675 Lotus japonicus HOM05D003192 ORTHO05D003596 2.6e-15 85.9 119 42.0
Actinidia30717 Actinidia chinensis HOM05D003192 ORTHO05D003596 3.4e-15 85.5 109 45.9
Glyma.01G023100 Glycine max HOM05D003192 ORTHO05D003596 3.4e-15 85.5 126 38.9
vmacro13008 Vaccinium macrocarpon HOM05D003192 ORTHO05D003596 3.4e-15 85.5 133 41.4
TPR.G14606 Trifolium pratense HOM05D003192 ORTHO05D003596 7.6e-15 84.3 131 38.2
TWI53G1641 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 7.6e-15 84.3 131 42.7
CANSAT54G2948 Cannabis sativa HOM05D003192 ORTHO05D003596 1.3e-14 83.6 133 39.1
Lsat_1_v5_gn_2_70360 Lactuca sativa HOM05D003192 ORTHO05D003596 1.3e-14 83.6 131 37.4
arahy.Tifrunner.gnm1.ann1.T6BZ3D Arachis hypogaea HOM05D003192 ORTHO05D003596 1.4e-13 80.1 123 40.7
Lj4g0006883 Lotus japonicus HOM05D003192 ORTHO05D003596 1.9e-13 79.7 130 37.7
ECA234G2607 Erigeron canadensis HOM05D003192 ORTHO05D003596 4.1e-13 78.6 125 36.8
Phvul.002G147100 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 7.1e-13 77.8 126 39.7
Sc03g0000330 Simmondsia chinensis HOM05D003192 ORTHO05D003596 7.1e-13 77.8 133 36.1
Sc08g0003910 Simmondsia chinensis HOM05D003192 ORTHO05D003596 1.2e-12 77.0 131 35.1
Dinv36931 Davidia involucrata HOM05D003192 ORTHO05D003596 2.1e-12 76.3 64 59.4
VMungo0299G0001 Vigna mungo HOM05D003192 ORTHO05D003596 2.1e-12 76.3 129 35.7
SEGI_05807 Sequoiadendron giganteum HOM05D003192 ORTHO05D003596 6.0e-12 74.7 126 34.9
Duzib264G0817 Durio zibethinus HOM05D003192 ORTHO05D014480 1.0e-11 73.9 78 55.1
DCAR_021912 Daucus carota HOM05D003192 ORTHO05D003596 1.3e-11 73.6 128 38.3
Glyma.15G058300 Glycine max HOM05D003192 ORTHO05D003596 2.3e-11 72.8 129 35.7
QL01p016133 Quercus lobata HOM05D003192 ORTHO05D003596 3.0e-11 72.4 108 42.6
HPP92_014211 Vanilla planifolia HOM05D003192 ORTHO05D003596 3.9e-11 72.0 119 37.8
Ca_00164_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 1.5e-10 70.1 132 36.4
CDE01G0670 Ceratophyllum demersum HOM05D003192 ORTHO05D003596 1.9e-10 69.7 133 33.8
unitig_32.g10709 Utricularia gibba HOM05D003192 ORTHO05D003596 1.9e-10 69.7 131 32.8
Glyma.09G199232 Glycine max HOM05D003192 ORTHO05D003596 3.3e-10 68.9 125 34.4
Psat1g214080 Pisum sativum HOM05D003192 ORTHO05D003596 3.3e-10 68.9 132 40.2
Hma1.2p1_1093F.1_g256220 Hydrangea macrophylla HOM05D003192 ORTHO05D003596 4.3e-10 68.6 129 38.8
HPP92_026470 Vanilla planifolia HOM05D003192 ORTHO05D003596 5.6e-10 68.2 119 37.0
A09p12220 Brassica napus HOM05D003192 ORTHO05D014480 2.1e-09 66.2 92 41.3
GSVIVG01005928001 Vitis vinifera HOM05D003192 ORTHO05D003596 6.2e-09 64.7 45 68.9
Dinv20194 Davidia involucrata HOM05D003192 ORTHO05D003596 1.1e-08 63.9 133 39.1
Dinv29065 Davidia involucrata HOM05D003192 ORTHO05D003596 1.1e-08 63.9 133 39.1
Ah.01g023960 Amaranthus hybridus HOM05D003192 ORTHO05D003596 1.8e-08 63.2 105 32.4
Lalb_Chr05g0216371 Lupinus albus HOM05D003192 ORTHO05D003596 2.4e-08 62.8 133 32.3
Phvul.006G201900 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 3.1e-08 62.4 129 31.8
VMungo1215G1834 Vigna mungo HOM05D003192 ORTHO05D003596 3.1e-08 62.4 122 36.1
arahy.Tifrunner.gnm1.ann1.CWW4UK Arachis hypogaea HOM05D003192 ORTHO05D003596 1.2e-07 60.5 123 34.1
Lj2P534T21 Lonicera japonica HOM05D003192 ORTHO05D003596 4.4e-07 58.5 64 46.9
Medtr2g009620 Medicago truncatula HOM05D003192 ORTHO05D003596 4.4e-07 58.5 130 32.3
BcaB03g12313 Brassica carinata HOM05D003192 ORTHO05D014480 5.8e-07 58.2 81 48.1
Zm00001eb053540 Zea mays HOM05D003192 ORTHO05D003596 7.6e-07 57.8 133 27.8
Peaxi162Scf00003g00329 Petunia axillaris HOM05D003192 ORTHO05D003596 9.9e-07 57.4 91 39.6
arahy.Tifrunner.gnm1.ann1.88QBIW Arachis hypogaea HOM05D003192 ORTHO05D003596 8.4e-06 54.3 131 30.5


User provided reference genes

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