Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2562 Fragaria x ananassa HOM05D000344 ORTHO05D005296 2.1e-197 692.2 355 100.0
FAN26G2818 Fragaria x ananassa HOM05D000344 ORTHO05D005296 1.9e-190 669.1 353 96.9
FAN28G1751 Fragaria x ananassa HOM05D000344 ORTHO05D005296 1.3e-186 656.4 353 94.9
FvH4_1g01010 Fragaria vesca HOM05D000344 ORTHO05D005296 8.3e-186 653.7 352 94.9
RcHm_v2.0_Chr2g0085751 Rosa chinensis HOM05D000344 ORTHO05D005296 4.1e-161 571.6 355 84.8
Prupe.7G262200 Prunus persica HOM05D000344 ORTHO05D005296 4.8e-93 345.5 365 56.7
MD15G1152500 Malus domestica HOM05D000344 ORTHO05D005296 1.0e-82 311.2 366 54.6
MD02G1008300 Malus domestica HOM05D000344 ORTHO05D005296 3.6e-80 302.8 364 52.5
QL02p093136 Quercus lobata HOM05D000344 ORTHO05D005296 1.4e-55 221.1 299 46.5
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 1.1e-52 211.5 332 44.0
Cfa021217 Carpinus fangiana HOM05D000344 ORTHO05D005296 4.1e-52 209.5 333 44.4
CANSAT11G2628 Cannabis sativa HOM05D000344 ORTHO05D005296 2.3e-50 203.8 344 42.2
Manes.06G036300 Manihot esculenta HOM05D000344 ORTHO05D005296 8.1e-48 195.3 338 39.3
CiPaw.16G113400 Carya illinoinensis HOM05D000344 ORTHO05D005296 3.5e-43 179.9 299 42.5
TAR625G0471 Trochodendron aralioides HOM05D000344 ORTHO05D005296 6.0e-43 179.1 272 45.6
Rhsim01G0034200 Rhododendron simsii HOM05D000344 ORTHO05D005296 1.7e-42 177.6 369 37.4
TWI34G1136 Tripterygium wilfordii HOM05D000344 ORTHO05D005296 1.9e-41 174.1 314 41.7
Actinidia04295 Actinidia chinensis HOM05D000344 ORTHO05D005296 3.3e-41 173.3 332 40.4
Hma1.2p1_0222F.1_g093490 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 5.6e-41 172.6 268 43.3
Eucgr.C00353 Eucalyptus grandis HOM05D000344 ORTHO05D005296 2.8e-40 170.2 331 39.0
Phvul.003G156400 Phaseolus vulgaris HOM05D000344 ORTHO05D005296 8.1e-40 168.7 280 40.7
GSVIVG01014079001 Vitis vinifera HOM05D000344 ORTHO05D005296 1.8e-39 167.5 321 38.9
ClCG02G014550 Citrullus lanatus HOM05D000344 ORTHO05D005296 3.1e-39 166.8 349 35.8
Duzib168G1790 Durio zibethinus HOM05D000344 ORTHO05D005296 7.6e-38 162.2 354 37.3
CAN.G160.72 Capsicum annuum HOM05D000344 ORTHO05D005296 1.3e-37 161.4 323 40.2
Peaxi162Scf00252g00019 Petunia axillaris HOM05D000344 ORTHO05D005296 4.9e-37 159.5 359 38.7
Atru.chr7.119 Acer truncatum HOM05D000344 ORTHO05D005296 8.3e-37 158.7 349 35.5
Sed0018237 Sechium edule HOM05D000344 ORTHO05D005296 8.3e-37 158.7 339 36.0
Glyma.17G074200 Glycine max HOM05D000344 ORTHO05D005296 1.9e-36 157.5 331 36.9
Nitab4.5_0009049g0030 Nicotiana tabacum HOM05D000344 ORTHO05D005296 4.1e-36 156.4 263 43.0
Nitab4.5_0006879g0010 Nicotiana tabacum HOM05D000344 ORTHO05D005296 9.2e-36 155.2 287 40.1
Ciclev10007375m.g Citrus clementina HOM05D000344 ORTHO05D005296 2.1e-35 154.1 330 37.9
Sabra18G0091500 Salix brachista HOM05D000344 ORTHO05D005296 2.7e-35 153.7 317 37.5
CsaV3_2G007460 Cucumis sativus L. HOM05D000344 ORTHO05D005296 1.7e-34 151.0 326 33.4
Gorai.009G055700 Gossypium raimondii HOM05D000344 ORTHO05D005296 1.7e-34 151.0 318 38.7
Lalb_Chr13g0300881 Lupinus albus HOM05D000344 ORTHO05D005296 2.3e-34 150.6 346 37.3
Gohir.A05G052400 Gossypium hirsutum HOM05D000344 ORTHO05D005296 3.0e-34 150.2 308 38.6
MELO3C004139.2 Cucumis melo HOM05D000344 ORTHO05D005296 3.9e-34 149.8 326 32.8
Duzib150G1122 Durio zibethinus HOM05D000344 ORTHO05D005296 5.1e-34 149.4 281 40.9
Hma1.2p1_0028F.1_g017540 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 6.6e-34 149.1 240 41.7
Oeu052192.1 Olea europaea HOM05D000344 ORTHO05D005296 5.6e-33 146.0 340 35.0
Lalb_Chr12g0198671 Lupinus albus HOM05D000344 ORTHO05D005296 1.2e-32 144.8 347 34.9
Thecc.09G031500 Theobroma cacao HOM05D000344 ORTHO05D005296 1.2e-32 144.8 345 37.7
VMungo1215G2428 Vigna mungo HOM05D000344 ORTHO05D005296 1.2e-32 144.8 280 38.6
Potri.006G185200 Populus trichocarpa HOM05D000344 ORTHO05D005296 3.6e-32 143.3 363 35.5
Duzib187G1763 Durio zibethinus HOM05D000344 ORTHO05D005296 8.1e-32 142.1 362 34.8
PGSC0003DMG400011136 Solanum tuberosum HOM05D000344 ORTHO05D005296 1.1e-31 141.7 304 36.2
GSVIVG01001910001 Vitis vinifera HOM05D000344 ORTHO05D005296 3.4e-30 136.7 140 52.9
Solyc07g005530.4 Solanum lycopersicum HOM05D000344 ORTHO05D005296 4.4e-30 136.3 304 37.5
Gohir.D05G053900 Gossypium hirsutum HOM05D000344 ORTHO05D005296 9.9e-30 135.2 308 36.7
PGR142G4209 Punica granatum HOM05D000344 ORTHO05D005296 1.3e-29 134.8 375 33.3
Ca_21122_v3 Cicer arietinum L. HOM05D000344 ORTHO05D005296 2.9e-29 133.7 324 33.0
Gohir.A08G251700 Gossypium hirsutum HOM05D000344 ORTHO05D005296 2.9e-29 133.7 334 36.5
Nn2g12347 Nelumbo nucifera HOM05D000344 ORTHO05D005296 3.8e-29 133.3 236 41.9
Potri.018G107500 Populus trichocarpa HOM05D000344 ORTHO05D005296 3.8e-29 133.3 358 34.9
COL.COLO4_18799 Corchorus olitorius HOM05D000344 ORTHO05D005296 4.9e-29 132.9 355 34.4
arahy.Tifrunner.gnm1.ann1.704TPP Arachis hypogaea HOM05D000344 ORTHO05D005296 1.4e-28 131.3 328 33.8
THA.LOC104811836 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 1.9e-28 131.0 312 34.3
Sopen07g001630 Solanum pennellii HOM05D000344 ORTHO05D005296 2.4e-28 130.6 304 36.8
Gorai.004G291700 Gossypium raimondii HOM05D000344 ORTHO05D005296 7.1e-28 129.0 335 35.5
Sabra06G0140700 Salix brachista HOM05D000344 ORTHO05D005296 7.1e-28 129.0 351 34.8
Oeu027650.1 Olea europaea HOM05D000344 ORTHO05D005296 9.3e-28 128.6 342 33.0
Gohir.D08G273300 Gossypium hirsutum HOM05D000344 ORTHO05D005296 1.2e-27 128.3 335 35.5
arahy.Tifrunner.gnm1.ann1.ALG29P Arachis hypogaea HOM05D000344 ORTHO05D005296 3.5e-27 126.7 328 33.2
MSTRG.10689 Avicennia marina HOM05D000344 ORTHO05D005296 7.8e-27 125.6 293 33.4
TAR636G1075 Trochodendron aralioides HOM05D000344 ORTHO05D005296 2.3e-26 124.0 144 48.6
Actinidia38328 Actinidia chinensis HOM05D000344 ORTHO05D005296 3.9e-26 123.2 326 35.6
Cc11_g03310 Coffea canephora HOM05D000344 ORTHO05D005296 1.3e-24 118.2 269 35.7
Lj4g0019888 Lotus japonicus HOM05D000344 ORTHO05D005296 3.6e-24 116.7 355 31.0
Medtr4g130940 Medicago truncatula HOM05D000344 ORTHO05D005296 2.4e-23 114.0 284 36.6
TPR.G24857 Trifolium pratense HOM05D000344 ORTHO05D005296 2.4e-23 114.0 299 35.5
Sc17g0006710 Simmondsia chinensis HOM05D000344 ORTHO05D005296 4.0e-23 113.2 290 34.5
Aqoxy7G03425 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 5.3e-23 112.8 321 35.5
SalBow5G5380 Salvia bowleyana HOM05D000344 ORTHO05D005296 5.3e-23 112.8 345 30.1
Lj4g0022650 Lotus japonicus HOM05D000344 ORTHO05D005296 9.0e-23 112.1 347 32.9
Aqoxy1G03315 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 3.4e-22 110.2 258 34.5
Cfa020829 Carpinus fangiana HOM05D000344 ORTHO05D014129 5.8e-22 109.4 84 64.3
Cc06_g15070 Coffea canephora HOM05D000344 ORTHO05D005296 7.6e-22 109.0 264 33.7
Lj9A682G44 Lonicera japonica HOM05D000344 ORTHO05D005296 4.9e-21 106.3 309 33.3
SalBow1G0321 Salvia bowleyana HOM05D000344 ORTHO05D005296 8.4e-21 105.5 347 29.4
Psat4g109520 Pisum sativum HOM05D000344 ORTHO05D005296 1.1e-20 105.1 314 29.9
DCAR_019390 Daucus carota HOM05D000344 ORTHO05D005296 5.4e-20 102.8 326 29.1
Migut.K00330 Erythranthe guttata HOM05D000344 ORTHO05D005296 1.7e-18 97.8 322 29.2
CSS0027545 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D043344 3.0e-18 97.1 278 33.1
DCAR_014812 Daucus carota HOM05D000344 ORTHO05D004969 3.0e-18 97.1 309 31.1
SGA_v2.0_scaffold12G05989 Striga asiatica HOM05D000344 ORTHO05D005296 6.6e-18 95.9 134 44.8
CARHR271780 Cardamine hirsuta HOM05D000344 ORTHO05D005296 1.1e-17 95.1 186 33.9
Sp6g19650 Schrenkiella parvula HOM05D000344 ORTHO05D005296 1.1e-17 95.1 222 33.3
Os02g0795000 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 9.6e-17 92.0 268 32.1
THA.LOC104817823 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 9.6e-17 92.0 305 31.5
AL8G34070 Arabidopsis lyrata HOM05D000344 ORTHO05D005296 1.3e-16 91.7 199 32.7
BcaB01g04469 Brassica carinata HOM05D000344 ORTHO05D005296 1.6e-16 91.3 340 30.6
C02p13720 Brassica napus HOM05D000344 ORTHO05D005296 2.8e-16 90.5 210 34.3
BolC2t07490H Brassica oleracea HOM05D000344 ORTHO05D005296 2.8e-16 90.5 210 34.3
Ah.08g212460 Amaranthus hybridus HOM05D000344 ORTHO05D005296 4.8e-16 89.7 206 33.5
CSS0016122 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 6.2e-16 89.4 61 67.2
Aa31LG3G13780 Aethionema arabicum HOM05D000344 ORTHO05D005296 1.1e-15 88.6 313 29.7
BraA02t05880Z Brassica rapa HOM05D000344 ORTHO05D005296 1.1e-15 88.6 248 32.7
BolC9t57831H Brassica oleracea HOM05D000344 ORTHO05D005296 1.8e-15 87.8 194 37.6
TPR.G8014 Trifolium pratense HOM05D000344 ORTHO05D005296 2.4e-15 87.4 85 50.6
SHI02820 Sapria himalayana HOM05D000344 ORTHO05D005296 4.0e-15 86.7 178 34.8
CDE02G1206 Ceratophyllum demersum HOM05D000344 ORTHO05D005296 5.3e-15 86.3 281 30.2
A10p16190 Brassica napus HOM05D000344 ORTHO05D005296 9.0e-15 85.5 148 39.2
Thhalv10012558m.g Eutrema salsugineum HOM05D000344 ORTHO05D005296 9.0e-15 85.5 267 32.2
HanXRQChr10g0313751 Helianthus annuus HOM05D000344 ORTHO05D005296 9.0e-15 85.5 259 27.8
BolC3t13908H Brassica oleracea HOM05D000344 ORTHO05D005296 1.2e-14 85.1 346 30.3
C03p14670 Brassica napus HOM05D000344 ORTHO05D005296 2.0e-14 84.3 346 30.1
BraA10t43610Z Brassica rapa HOM05D000344 ORTHO05D005296 2.0e-14 84.3 250 34.0
AT5G57990 Arabidopsis thaliana HOM05D000344 ORTHO05D005296 2.6e-14 84.0 137 38.7
AUR62034662 Chenopodium quinoa HOM05D000344 ORTHO05D005296 2.6e-14 84.0 248 32.3
A03p12460 Brassica napus HOM05D000344 ORTHO05D005296 4.5e-14 83.2 334 29.3
BraA03t10561Z Brassica rapa HOM05D000344 ORTHO05D005296 4.5e-14 83.2 334 29.3
Sed0023248 Sechium edule HOM05D000344 ORTHO05D005296 4.5e-14 83.2 280 27.5
PSO675G3655 Papaver somniferum HOM05D000344 ORTHO05D005296 9.9e-14 82.0 206 34.5
CSS0010351 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 1.7e-13 81.3 63 58.7
Lsat_1_v5_gn_5_91020 Lactuca sativa HOM05D000344 ORTHO05D005296 6.4e-13 79.3 185 33.5
C09p49800 Brassica napus HOM05D000344 ORTHO05D005296 2.4e-12 77.4 316 30.7
AUR62008577 Chenopodium quinoa HOM05D000344 ORTHO05D005296 7.1e-12 75.9 314 26.4
A02p08070 Brassica napus HOM05D000344 ORTHO05D005296 1.2e-11 75.1 171 34.5
ATR0739G085 Amborella trichopoda HOM05D000344 ORTHO05D005296 1.6e-11 74.7 275 29.8
Zm00001eb374670 Zea mays HOM05D000344 ORTHO05D005296 2.7e-11 73.9 83 47.0
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 2.3e-10 70.9 90 42.2
CSS0015759 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 2.3e-10 70.9 57 59.6
CSS0038447 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 3.9e-10 70.1 53 62.3
HPP92_010393 Vanilla planifolia HOM05D000344 ORTHO05D014129 8.7e-10 68.9 296 31.1
ECA234G2365 Erigeron canadensis HOM05D000344 ORTHO05D004969 1.1e-09 68.6 294 25.5
Carub.0008s1852 Capsella rubella HOM05D000344 ORTHO05D005296 2.5e-09 67.4 154 33.1
Os06g0184300 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 2.5e-09 67.4 248 28.2
PSO732G0388 Papaver somniferum HOM05D000344 ORTHO05D005296 2.1e-08 64.3 202 32.2
unitig_8.g3634 Utricularia gibba HOM05D000344 ORTHO05D005296 2.1e-08 64.3 299 26.1
SEGI_32126 Sequoiadendron giganteum HOM05D000344 ORTHO05D005296 7.6e-06 55.8 334 24.3


User provided reference genes

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