Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.0e-140 502.7 300 100.0
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 3.8e-139 498.4 300 95.7
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 1.0e-136 490.3 283 99.6
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 8.1e-134 480.7 290 96.2
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 5.7e-103 378.3 282 77.7
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 9.7e-79 297.7 287 63.8
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 3.7e-70 269.2 250 66.0
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 4.0e-64 249.2 219 67.1
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 1.5e-63 247.3 218 66.5
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 1.5e-63 247.3 218 66.5
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.1e-61 241.1 206 69.9
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.6e-60 237.3 212 66.5
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 6.6e-59 231.9 293 55.3
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 6.6e-59 231.9 207 68.1
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 8.6e-59 231.5 209 67.9
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 4.3e-58 229.2 221 65.2
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 7.3e-58 228.4 288 55.9
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 7.3e-58 228.4 220 64.5
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 2.1e-57 226.9 215 64.7
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 4.7e-57 225.7 219 63.9
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 6.1e-57 225.3 219 61.6
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 6.1e-57 225.3 203 65.0
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 8.0e-57 224.9 220 63.6
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 1.0e-56 224.6 207 66.2
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 1.2e-55 221.1 278 52.5
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.0e-55 220.3 219 60.3
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 3.4e-55 219.5 218 62.8
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 7.5e-55 218.4 219 62.6
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.7e-54 217.2 220 62.7
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 2.2e-54 216.9 291 53.6
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 4.9e-54 215.7 221 60.6
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.4e-53 213.4 282 53.9
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 2.4e-53 213.4 268 53.7
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 7.0e-53 211.8 215 60.0
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 9.2e-53 211.5 226 58.0
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 9.2e-53 211.5 220 61.8
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 9.2e-53 211.5 272 53.7
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 5.9e-52 208.8 260 56.2
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 7.8e-52 208.4 219 62.1
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 1.3e-51 207.6 186 65.6
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 1.7e-51 207.2 288 51.0
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 2.3e-51 206.8 289 52.2
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 5.0e-51 205.7 207 61.4
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 8.6e-51 204.9 215 59.5
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 1.5e-50 204.1 213 60.6
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 2.5e-50 203.4 203 62.1
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 5.6e-50 202.2 256 55.1
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.2e-49 201.1 221 57.9
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 1.6e-49 200.7 218 59.2
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 2.1e-49 200.3 168 70.2
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 6.2e-49 198.7 194 62.9
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 6.2e-49 198.7 278 51.1
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 8.0e-49 198.4 165 70.3
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 8.0e-49 198.4 266 52.3
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.0e-48 198.0 216 59.3
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.8e-48 197.2 189 66.1
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 2.3e-48 196.8 214 58.4
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 5.2e-48 195.7 264 50.8
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 5.2e-48 195.7 218 57.8
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 5.2e-48 195.7 230 55.2
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 6.8e-48 195.3 228 56.1
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 1.5e-47 194.1 221 57.5
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 2.0e-47 193.7 211 56.9
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 2.0e-47 193.7 283 49.8
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 2.6e-47 193.4 233 53.6
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 3.4e-47 193.0 194 60.8
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 4.4e-47 192.6 221 57.0
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 7.5e-47 191.8 222 58.6
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.7e-46 190.7 266 51.1
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 1.7e-46 190.7 214 59.3
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.7e-46 190.7 216 54.2
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 2.2e-46 190.3 230 56.5
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 2.9e-46 189.9 242 52.1
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 2.9e-46 189.9 228 55.3
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 2.9e-46 189.9 210 55.7
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 4.9e-46 189.1 196 58.7
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 6.4e-46 188.7 209 55.0
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 8.3e-46 188.3 210 58.1
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 1.1e-45 188.0 209 54.5
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.1e-45 188.0 221 53.8
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 1.1e-45 188.0 219 56.6
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 1.4e-45 187.6 196 58.2
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 1.4e-45 187.6 222 56.3
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 2.4e-45 186.8 209 54.1
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.4e-45 186.8 273 48.4
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 3.2e-45 186.4 211 53.1
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 3.2e-45 186.4 211 53.1
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 3.2e-45 186.4 281 49.8
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 4.1e-45 186.0 215 56.3
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 5.4e-45 185.7 192 59.9
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 2.0e-44 183.7 304 43.4
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.0e-43 181.4 293 46.1
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 3.0e-43 179.9 248 50.0
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 3.9e-43 179.5 221 54.8
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 3.9e-43 179.5 152 69.1
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 3.9e-43 179.5 248 50.0
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 3.9e-43 179.5 281 43.1
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 5.0e-43 179.1 225 55.1
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 1.5e-42 177.6 225 54.7
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.5e-42 177.6 203 57.6
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 3.3e-42 176.4 222 51.8
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 7.3e-42 175.3 212 54.2
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 7.3e-42 175.3 212 54.7
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 7.3e-42 175.3 249 49.4
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 9.5e-42 174.9 221 52.0
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 9.5e-42 174.9 219 51.1
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.8e-41 173.3 222 56.3
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 8.1e-41 171.8 162 61.7
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 2.6e-39 166.8 246 48.4
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 1.3e-38 164.5 189 54.5
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 1.1e-37 161.4 283 43.1
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.4e-37 161.0 224 48.7
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 9.2e-37 158.3 214 46.7
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 2.7e-36 156.8 110 78.2
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 3.5e-36 156.4 148 64.2
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 6.0e-36 155.6 115 73.9
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 7.8e-36 155.2 254 48.0
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 7.8e-36 155.2 180 54.4
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.7e-35 154.1 135 65.9
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 6.6e-35 152.1 190 51.6
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 4.3e-34 149.4 134 65.7
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 2.8e-33 146.7 199 48.7
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 2.8e-33 146.7 182 52.2
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 4.7e-33 146.0 141 61.7
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 8.1e-33 145.2 140 64.3
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 2.3e-32 143.7 116 72.4
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.2e-31 141.4 131 66.4
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 4.9e-30 136.0 141 58.9
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 1.9e-29 134.0 178 48.9
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 4.6e-28 129.4 88 81.8
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 8.1e-25 118.6 118 59.3
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 3.1e-24 116.7 131 57.3
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 2.0e-23 114.0 136 53.7
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 6.4e-22 109.0 102 59.8
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.5e-18 97.8 101 58.4
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 1.9e-18 97.4 155 44.5
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 1.1e-16 91.7 161 39.1
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 5.3e-16 89.4 130 43.8
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 6.9e-16 89.0 88 62.5
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 4.5e-15 86.3 105 44.8
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.7e-14 84.3 61 75.4
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.9e-14 83.6 116 50.9
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 4.9e-14 82.8 150 39.3
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 6.4e-14 82.4 165 44.2
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 2.4e-13 80.5 82 54.9
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.1e-09 67.4 46 78.3
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 4.8e-09 66.2 49 75.5
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 5.3e-08 62.8 106 45.3


User provided reference genes

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