Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2385 Fragaria x ananassa HOM05D003689 ORTHO05D003950 7.7e-81 304.7 289 100.0
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 1.7e-67 260.4 136 99.3
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.2e-67 260.0 136 99.3
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.3e-64 250.8 134 95.5
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 6.3e-59 231.9 137 87.6
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 5.9e-41 172.2 133 66.9
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 1.2e-36 157.9 137 65.7
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 2.0e-28 130.6 139 50.4
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 4.4e-28 129.4 139 50.4
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 4.1e-26 122.9 139 46.8
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 9.2e-26 121.7 139 46.0
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 3.9e-24 116.3 138 45.7
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 1.1e-23 114.8 138 44.9
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 2.0e-20 104.0 140 40.7
Nn8g39148 Nelumbo nucifera HOM05D003689 ORTHO05D003950 4.4e-20 102.8 293 65.9
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.3e-19 101.3 291 63.2
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 8.3e-19 98.6 291 63.6
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 1.4e-18 97.8 293 48.1
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 1.4e-18 97.8 145 40.7
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 9.2e-18 95.1 140 39.3
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 2.7e-17 93.6 286 57.7
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 3.5e-17 93.2 137 41.6
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 1.3e-16 91.3 136 43.4
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 2.3e-16 90.5 289 62.3
Cpa.g.sc23.95 Carica papaya HOM05D003689 ORTHO05D003950 3.0e-16 90.1 135 40.7
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 3.0e-16 90.1 141 46.1
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 5.1e-16 89.4 141 46.1
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 6.6e-16 89.0 140 39.3
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 1.1e-15 88.2 137 40.1
MBI04_g43860_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 1.5e-15 87.8 139 37.4
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 4.3e-15 86.3 141 41.1
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 5.6e-15 85.9 138 35.5
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 7.3e-15 85.5 128 41.4
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.6e-14 84.3 133 39.8
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 1.6e-14 84.3 294 56.5
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 2.8e-14 83.6 139 37.4
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 2.8e-14 83.6 138 36.2
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 6.2e-14 82.4 140 41.4
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.1e-13 81.6 140 41.4
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 1.1e-13 81.6 138 35.5
TAR624G0021 Trochodendron aralioides HOM05D003689 ORTHO05D003950 1.4e-13 81.3 289 64.0
Cpa.g.sc78.81 Carica papaya HOM05D003689 ORTHO05D003950 8.9e-13 78.6 288 61.5
ECA234G0433 Erigeron canadensis HOM05D003689 ORTHO05D003950 8.9e-13 78.6 38 92.1
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 1.2e-12 78.2 139 36.7
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 1.5e-12 77.8 139 36.0
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 2.0e-12 77.4 126 42.1
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 2.6e-12 77.0 139 35.3
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 2.6e-12 77.0 139 35.3
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 3.4e-12 76.6 39 87.2
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 4.4e-12 76.3 140 35.7
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 5.8e-12 75.9 139 35.3
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 9.9e-12 75.1 39 84.6
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.7e-11 74.3 137 32.8
EL10Ac8g18475 Beta vulgaris HOM05D003689 ORTHO05D003950 2.9e-11 73.6 39 82.1
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 2.9e-11 73.6 137 33.6
MD15G1097900 Malus domestica HOM05D003689 ORTHO05D003950 4.9e-11 72.8 38 81.6
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 8.4e-11 72.0 140 34.3
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 1.4e-10 71.2 135 37.0
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.4e-10 70.5 133 32.3
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.2e-10 70.1 137 36.5
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 7.1e-10 68.9 134 34.3
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 9.3e-10 68.6 135 40.0
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 9.3e-10 68.6 141 36.9
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.2e-09 68.2 137 32.8
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 3.5e-09 66.6 135 37.0
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 4.6e-09 66.2 139 33.8
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 4.6e-09 66.2 137 32.1
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 4.6e-09 66.2 137 32.1
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 6.0e-09 65.9 135 31.1
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 7.8e-09 65.5 141 36.2
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 7.8e-09 65.5 136 33.1
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 1.0e-08 65.1 135 31.9
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 1.0e-08 65.1 135 29.6
Lj8C603T16 Lonicera japonica HOM05D003689 ORTHO05D003950 1.0e-08 65.1 39 69.2
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 1.3e-08 64.7 138 34.1
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 1.7e-08 64.3 138 30.4
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 1.7e-08 64.3 135 39.3
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.7e-08 64.3 135 39.3
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 1.7e-08 64.3 137 32.8
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 1.7e-08 64.3 137 37.2
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 2.3e-08 63.9 130 31.5
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 5.1e-08 62.8 135 28.1
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 8.7e-08 62.0 137 31.4
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 5.6e-07 59.3 89 42.7
MD02G1045000 Malus domestica HOM05D003689 ORTHO05D003950 7.3e-07 58.9 40 65.0
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 7.3e-07 58.9 133 29.3
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 9.6e-07 58.5 122 34.4
Potri.006G242600 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.3e-06 58.2 140 32.1
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 2.8e-06 57.0 137 29.2
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.6e-06 56.6 139 30.9
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 4.8e-06 56.2 141 34.0
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 4.8e-06 56.2 133 28.6
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 8.1e-06 55.5 134 30.6


User provided reference genes

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