Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2272 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.6e-76 288.1 139 100.0
FAN23G0551 Fragaria x ananassa HOM05D003167 ORTHO05D003929 8.9e-35 150.6 125 60.8
FvH4_1g06450 Fragaria vesca HOM05D003167 ORTHO05D003929 1.2e-34 150.2 125 60.0
FAN26G0867 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.5e-34 149.8 125 60.0
FAN26G2184 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.5e-34 149.8 125 60.0
FAN19G3088 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.6e-34 149.1 125 60.0
SalBow8G1467 Salvia bowleyana HOM05D003167 ORTHO05D003929 1.7e-33 146.4 117 62.4
SalBow8G3947 Salvia bowleyana HOM05D003167 ORTHO05D003929 1.7e-33 146.4 117 62.4
PSO339G0841 Papaver somniferum HOM05D003167 ORTHO05D003929 2.2e-33 146.0 125 56.8
RcHm_v2.0_Chr3g0471451 Rosa chinensis HOM05D003167 ORTHO05D003929 2.2e-33 146.0 125 59.2
RcHm_v2.0_Chr2g0092191 Rosa chinensis HOM05D003167 ORTHO05D003929 2.9e-33 145.6 125 58.4
vmacro07353 Vaccinium macrocarpon HOM05D003167 ORTHO05D003929 2.9e-33 145.6 125 59.2
CSS0014862 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 3.7e-33 145.2 125 59.2
CSS0043785 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 3.7e-33 145.2 125 59.2
Eucgr.K02416 Eucalyptus grandis HOM05D003167 ORTHO05D003929 3.7e-33 145.2 125 58.4
FvH4_6g17312 Fragaria vesca HOM05D003167 ORTHO05D003929 3.7e-33 145.2 125 58.4
FAN02G2003 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.7e-33 145.2 125 58.4
FAN05G3544 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.7e-33 145.2 125 58.4
FAN05G3981 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.7e-33 145.2 125 58.4
FAN14G2907 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.7e-33 145.2 125 58.4
Sed0027110 Sechium edule HOM05D003167 ORTHO05D003929 3.7e-33 145.2 125 58.4
THA.LOC104816364 Tarenaya hassleriana HOM05D003167 ORTHO05D003929 3.7e-33 145.2 125 58.4
Dinv35839 Davidia involucrata HOM05D003167 ORTHO05D003929 4.9e-33 144.8 125 58.4
ECA238G2918 Erigeron canadensis HOM05D003167 ORTHO05D003929 6.4e-33 144.4 125 58.4
FAN28G1035 Fragaria x ananassa HOM05D003167 ORTHO05D003929 6.4e-33 144.4 125 59.2
Lj1g0005916 Lotus japonicus HOM05D003167 ORTHO05D003929 6.4e-33 144.4 125 59.2
MSTRG.21603 Avicennia marina HOM05D003167 ORTHO05D003929 1.1e-32 143.7 125 58.4
EL10Ac7g16722 Beta vulgaris HOM05D003167 ORTHO05D003929 1.1e-32 143.7 125 58.4
ECA232G4074 Erigeron canadensis HOM05D003167 ORTHO05D003929 1.1e-32 143.7 125 57.6
Migut.G00710 Erythranthe guttata HOM05D003167 ORTHO05D003929 1.1e-32 143.7 125 58.4
FAN05G5009 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.1e-32 143.7 125 57.6
HanXRQChr11g0325191 Helianthus annuus HOM05D003167 ORTHO05D003929 1.1e-32 143.7 117 61.5
Lsat_1_v5_gn_2_23140 Lactuca sativa HOM05D003167 ORTHO05D003929 1.1e-32 143.7 125 58.4
Manes.08G017200 Manihot esculenta HOM05D003167 ORTHO05D003929 1.1e-32 143.7 125 57.6
A10p02430 Brassica napus HOM05D003167 ORTHO05D003929 1.4e-32 143.3 125 56.8
C05p02250 Brassica napus HOM05D003167 ORTHO05D003929 1.4e-32 143.3 125 56.8
BolC5t29003H Brassica oleracea HOM05D003167 ORTHO05D003929 1.4e-32 143.3 125 56.8
Cpa.g.sc5.120 Carica papaya HOM05D003167 ORTHO05D003929 1.4e-32 143.3 125 57.6
ClCG10G019590 Citrullus lanatus HOM05D003167 ORTHO05D003929 1.4e-32 143.3 125 57.6
Cc10_g12700 Coffea canephora HOM05D003167 ORTHO05D003929 1.4e-32 143.3 125 58.4
MELO3C009413.2 Cucumis melo HOM05D003167 ORTHO05D003929 1.4e-32 143.3 125 57.6
CsaV3_3G036590 Cucumis sativus L. HOM05D003167 ORTHO05D003929 1.4e-32 143.3 125 57.6
Hma1.2p1_0564F.1_g179130 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 1.4e-32 143.3 125 58.4
SGA_v2.0_scaffold312G48279 Striga asiatica HOM05D003167 ORTHO05D003929 1.4e-32 143.3 117 60.7
PGR142G4079 Punica granatum HOM05D003167 ORTHO05D003929 1.9e-32 142.9 125 57.6
Zm00001eb061170 Zea mays HOM05D003167 ORTHO05D003929 1.9e-32 142.9 125 58.4
arahy.Tifrunner.gnm1.ann1.P92TZX Arachis hypogaea HOM05D003167 ORTHO05D003929 2.4e-32 142.5 125 57.6
arahy.Tifrunner.gnm1.ann1.WY8M22 Arachis hypogaea HOM05D003167 ORTHO05D003929 2.4e-32 142.5 125 57.6
BcaC07g42222 Brassica carinata HOM05D003167 ORTHO05D003929 2.4e-32 142.5 125 56.8
COL.COLO4_22264 Corchorus olitorius HOM05D003167 ORTHO05D003929 2.4e-32 142.5 117 60.7
Haze_19497 Corylus avellana HOM05D003167 ORTHO05D003929 2.4e-32 142.5 125 58.4
Duzib093G1992 Durio zibethinus HOM05D003167 ORTHO05D003929 2.4e-32 142.5 117 60.7
Thhalv10006994m.g Eutrema salsugineum HOM05D003167 ORTHO05D003929 2.4e-32 142.5 125 56.8
Gohir.A04G067800 Gossypium hirsutum HOM05D003167 ORTHO05D003929 2.4e-32 142.5 117 60.7
Gohir.D04G106400 Gossypium hirsutum HOM05D003167 ORTHO05D003929 2.4e-32 142.5 117 60.7
Gorai.009G410400 Gossypium raimondii HOM05D003167 ORTHO05D003929 2.4e-32 142.5 117 60.7
Lj3C1008T14 Lonicera japonica HOM05D003167 ORTHO05D003929 2.4e-32 142.5 125 57.6
Psat6g078080 Pisum sativum HOM05D003167 ORTHO05D003929 2.4e-32 142.5 125 57.6
Potri.006G118700 Populus trichocarpa HOM05D003167 ORTHO05D003929 2.4e-32 142.5 125 57.6
Prupe.7G122300 Prunus persica HOM05D003167 ORTHO05D003929 2.4e-32 142.5 117 60.7
Sabra06G0093300 Salix brachista HOM05D003167 ORTHO05D003929 2.4e-32 142.5 125 57.6
SMO169G0108 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 2.4e-32 142.5 125 57.6
Thecc.05G076300 Theobroma cacao HOM05D003167 ORTHO05D003929 2.4e-32 142.5 117 60.7
TPR.G27088 Trifolium pratense HOM05D003167 ORTHO05D003929 2.4e-32 142.5 125 57.6
VMungo0720G2588 Vigna mungo HOM05D003167 ORTHO05D003929 2.4e-32 142.5 125 57.6
CARHR003250 Cardamine hirsuta HOM05D003167 ORTHO05D003929 3.2e-32 142.1 125 56.8
QL07p041296 Quercus lobata HOM05D003167 ORTHO05D003929 3.2e-32 142.1 125 57.6
Aa31LG1G9100 Aethionema arabicum HOM05D003167 ORTHO05D003929 4.1e-32 141.7 125 56.8
Ah.15g091340 Amaranthus hybridus HOM05D003167 ORTHO05D003929 4.1e-32 141.7 125 57.6
AL1G13510 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 4.1e-32 141.7 125 56.8
AT1G03910 Arabidopsis thaliana HOM05D003167 ORTHO05D003929 4.1e-32 141.7 125 56.8
CANSAT80G1311 Cannabis sativa HOM05D003167 ORTHO05D003929 4.1e-32 141.7 125 56.8
Carub.0001s0306 Capsella rubella HOM05D003167 ORTHO05D003929 4.1e-32 141.7 125 56.8
Cfa016494 Carpinus fangiana HOM05D003167 ORTHO05D003929 4.1e-32 141.7 125 57.6
AUR62040188 Chenopodium quinoa HOM05D003167 ORTHO05D003929 4.1e-32 141.7 125 57.6
AUR62042696 Chenopodium quinoa HOM05D003167 ORTHO05D003929 4.1e-32 141.7 125 57.6
Mapoly0001s0156 Marchantia polymorpha HOM05D003167 ORTHO05D003929 4.1e-32 141.7 125 56.8
Sp1g02770 Schrenkiella parvula HOM05D003167 ORTHO05D003929 4.1e-32 141.7 125 56.8
Hund04098 Selenicereus undatus HOM05D003167 ORTHO05D003929 4.1e-32 141.7 125 57.6
TAR623G0013 Trochodendron aralioides HOM05D003167 ORTHO05D003929 4.1e-32 141.7 125 57.6
Ciclev10011207m.g Citrus clementina HOM05D003167 ORTHO05D003929 5.4e-32 141.4 125 56.8
TPR.G31678 Trifolium pratense HOM05D003167 ORTHO05D003929 5.4e-32 141.4 125 57.6
ATR0724G050 Amborella trichopoda HOM05D003167 ORTHO05D003929 7.1e-32 141.0 117 59.8
GSVIVG01033725001 Vitis vinifera HOM05D003167 ORTHO05D003929 7.1e-32 141.0 117 59.8
Atru.chr8.1695 Acer truncatum HOM05D003167 ORTHO05D003929 9.2e-32 140.6 125 54.4
CiPaw.10G002600 Carya illinoinensis HOM05D003167 ORTHO05D003929 9.2e-32 140.6 117 60.7
Ca_08942_v3 Cicer arietinum L. HOM05D003167 ORTHO05D003929 9.2e-32 140.6 125 56.8
Glyma.19G188800 Glycine max HOM05D003167 ORTHO05D003929 9.2e-32 140.6 125 56.8
MD14G1096200 Malus domestica HOM05D003167 ORTHO05D003929 9.2e-32 140.6 117 59.8
Medtr1g061860 Medicago truncatula HOM05D003167 ORTHO05D003929 9.2e-32 140.6 125 56.8
Medtr7g102700 Medicago truncatula HOM05D003167 ORTHO05D003929 9.2e-32 140.6 125 56.8
Phvul.001G184000 Phaseolus vulgaris HOM05D003167 ORTHO05D003929 9.2e-32 140.6 125 56.8
Pp3c27_420 Physcomitrium patens HOM05D003167 ORTHO05D003929 9.2e-32 140.6 125 56.8
Psat3g037760 Pisum sativum HOM05D003167 ORTHO05D003929 9.2e-32 140.6 125 56.8
SEGI_34935 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 9.2e-32 140.6 125 56.0
VMungo1383G0302 Vigna mungo HOM05D003167 ORTHO05D003929 9.2e-32 140.6 125 56.8
A09p68130 Brassica napus HOM05D003167 ORTHO05D003929 1.2e-31 140.2 125 56.0
C08p52570 Brassica napus HOM05D003167 ORTHO05D003929 1.2e-31 140.2 125 56.0
BolC8t52784H Brassica oleracea HOM05D003167 ORTHO05D003929 1.2e-31 140.2 125 56.0
BraA09t42148Z Brassica rapa HOM05D003167 ORTHO05D003929 1.2e-31 140.2 125 56.0
CDE04G1328 Ceratophyllum demersum HOM05D003167 ORTHO05D003929 1.6e-31 139.8 117 59.0
Lj8P306T56 Lonicera japonica HOM05D003167 ORTHO05D003929 2.7e-31 139.0 117 59.8
Lalb_Chr25g0288761 Lupinus albus HOM05D003167 ORTHO05D003929 2.7e-31 139.0 125 56.0
Aqoxy1G01021 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 3.5e-31 138.7 115 59.1
Glyma.03G188600 Glycine max HOM05D003167 ORTHO05D003929 3.5e-31 138.7 125 56.0
TAR636G1269 Trochodendron aralioides HOM05D003167 ORTHO05D003929 3.5e-31 138.7 116 59.5
DCAR_020795 Daucus carota HOM05D003167 ORTHO05D003929 7.8e-31 137.5 117 58.1
Oeu027192.1 Olea europaea HOM05D003167 ORTHO05D003929 7.8e-31 137.5 117 59.0
Peaxi162Scf00732g00028 Petunia axillaris HOM05D003167 ORTHO05D003929 7.8e-31 137.5 125 56.0
CAN.G738.3 Capsicum annuum HOM05D003167 ORTHO05D003929 1.3e-30 136.7 125 55.2
Lalb_Chr21g0315291 Lupinus albus HOM05D003167 ORTHO05D003929 1.7e-30 136.3 125 55.2
SHI27742 Sapria himalayana HOM05D003167 ORTHO05D003929 3.0e-30 135.6 125 55.2
Nitab4.5_0002027g0020 Nicotiana tabacum HOM05D003167 ORTHO05D003929 5.1e-30 134.8 125 54.4
PSO210G0575 Papaver somniferum HOM05D003167 ORTHO05D003929 5.1e-30 134.8 125 53.6
Peaxi162Scf01089g10011 Petunia axillaris HOM05D003167 ORTHO05D003929 5.1e-30 134.8 125 54.4
Solyc10g085410.3 Solanum lycopersicum HOM05D003167 ORTHO05D003929 5.1e-30 134.8 125 54.4
Sopen10g034860 Solanum pennellii HOM05D003167 ORTHO05D003929 5.1e-30 134.8 125 54.4
PGSC0003DMG400040194 Solanum tuberosum HOM05D003167 ORTHO05D003929 5.1e-30 134.8 125 54.4
Aqoxy1G01022 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 8.6e-30 134.0 117 58.1
FAN19G0600 Fragaria x ananassa HOM05D003167 ORTHO05D003929 8.6e-30 134.0 115 60.0
Hma1.2p1_2996F.1_g331470 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 2.5e-29 132.5 125 54.4
Cc07_g17880 Coffea canephora HOM05D003167 ORTHO05D003929 1.6e-28 129.8 127 51.2
Thecc.06G013600 Theobroma cacao HOM05D003167 ORTHO05D003929 1.6e-28 129.8 125 52.8
SMO364G0524 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 2.1e-28 129.4 126 54.0
Thecc.08G192100 Theobroma cacao HOM05D003167 ORTHO05D003929 2.8e-28 129.0 130 53.1
Carub.0004s1866 Capsella rubella HOM05D003167 ORTHO05D003929 3.6e-28 128.6 137 51.1
Cre09.g398650 Chlamydomonas reinhardtii HOM05D003167 ORTHO05D003929 3.6e-28 128.6 119 54.6
Hma1.2p1_0033F.1_g020920 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 6.2e-28 127.9 125 53.6
BcaNung06144 Brassica carinata HOM05D003167 ORTHO05D003929 1.4e-27 126.7 125 51.2
COL.COLO4_36480 Corchorus olitorius HOM05D003167 ORTHO05D003929 1.4e-27 126.7 122 51.6
SEGI_27063 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 1.4e-27 126.7 117 53.8
AL4G33010 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 2.6e-26 122.5 137 51.1
AUR62018820 Chenopodium quinoa HOM05D003167 ORTHO05D003929 5.8e-26 121.3 115 51.3
Cc04_g07780 Coffea canephora HOM05D003167 ORTHO05D003929 7.6e-26 120.9 123 49.6
QL10p005646 Quercus lobata HOM05D003167 ORTHO05D003929 9.9e-26 120.6 121 50.4
Lj1P1240T21 Lonicera japonica HOM05D003167 ORTHO05D003929 2.2e-25 119.4 118 50.0
Aqoxy3G01485 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 6.4e-25 117.9 122 50.0
CARHR131270 Cardamine hirsuta HOM05D003167 ORTHO05D003929 1.1e-24 117.1 125 48.0
AUR62007182 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.1e-24 117.1 117 49.6
Aqoxy3G01613 Aquilegia oxysepala HOM05D003167 ORTHO05D000007 1.4e-24 116.7 116 50.0
AUR62007183 Chenopodium quinoa HOM05D003167 ORTHO05D003929 3.2e-24 115.5 115 48.7
Potri.001G242900 Populus trichocarpa HOM05D003167 ORTHO05D003929 4.1e-24 115.2 117 48.7
Atru.chr10.2404 Acer truncatum HOM05D003167 ORTHO05D003929 5.4e-24 114.8 126 48.4
Cfa022090 Carpinus fangiana HOM05D003167 ORTHO05D003929 1.2e-23 113.6 148 43.9
HPP92_017793 Vanilla planifolia HOM05D003167 ORTHO05D003929 1.0e-22 110.5 100 55.0
AUR62022073 Chenopodium quinoa HOM05D003167 ORTHO05D003929 3.9e-22 108.6 119 44.5
AUR62022074 Chenopodium quinoa HOM05D003167 ORTHO05D003929 3.9e-22 108.6 119 44.5
EL10Ac3g06890 Beta vulgaris HOM05D003167 ORTHO05D003929 4.0e-19 98.6 102 50.0
Eucgr.D02277 Eucalyptus grandis HOM05D003167 ORTHO05D003929 7.6e-18 94.4 52 82.7
BcaNung00709 Brassica carinata HOM05D003167 ORTHO05D003929 1.4e-16 90.1 52 73.1
QL10p008780 Quercus lobata HOM05D003167 ORTHO05D033269 1.9e-16 89.7 52 75.0
MD12G1102100 Malus domestica HOM05D003167 ORTHO05D003929 3.2e-16 89.0 96 45.8
PRCOL_00002534 Prasinoderma coloniale HOM05D003167 ORTHO05D003929 7.1e-16 87.8 126 38.9
AagrBONN_evm.TU.Sc2ySwM_344.2239 Anthoceros agrestis HOM05D003167 ORTHO05D003929 9.3e-16 87.4 95 48.4
Nitab4.5_0007768g0040 Nicotiana tabacum HOM05D003167 ORTHO05D003929 6.0e-15 84.7 72 56.9
Rhsim03G0085500 Rhododendron simsii HOM05D003167 ORTHO05D003929 5.1e-14 81.6 91 48.4
Glyma.13G148300 Glycine max HOM05D003167 ORTHO05D003929 5.6e-13 78.2 93 44.1
unitig_578.g16659 Utricularia gibba HOM05D003167 ORTHO05D003929 5.6e-13 78.2 104 38.5
Os04g0558200 Oryza sativa ssp. japonica HOM05D003167 ORTHO05D003929 9.6e-13 77.4 100 41.0
C07p61860 Brassica napus HOM05D003167 ORTHO05D033269 1.3e-12 77.0 45 71.1
CBR_g4119 Chara braunii HOM05D003167 ORTHO05D003929 2.8e-12 75.9 86 45.3
Actinidia26630 Actinidia chinensis HOM05D003167 ORTHO05D003929 6.4e-09 64.7 55 52.7
CAN.G1459.3 Capsicum annuum HOM05D003167 ORTHO05D003929 7.1e-08 61.2 29 79.3
Hma1.2p1_2596F.1_g325110 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 3.9e-06 55.5 74 43.2


User provided reference genes

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