Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.9e-73 279.6 208 100.0
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.1e-65 253.8 220 85.9
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.1e-44 184.1 234 69.7
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.2e-44 182.6 224 67.0
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 2.1e-32 143.3 72 100.0
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 1.4e-31 140.6 72 97.2
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 4.6e-27 125.6 72 90.3
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 1.7e-26 123.6 72 88.9
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 3.0e-26 122.9 72 88.9
FAN26G3048 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.6e-25 118.6 154 74.0
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 8.1e-24 114.8 70 82.9
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 8.1e-24 114.8 72 79.2
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 2.4e-23 113.2 72 80.6
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 2.4e-23 113.2 71 78.9
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 6.9e-23 111.7 61 85.2
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 9.0e-23 111.3 72 79.2
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.2e-22 110.9 72 77.8
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 1.5e-22 110.5 61 88.5
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.0e-22 110.2 72 77.8
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 3.4e-22 109.4 72 76.4
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 4.4e-22 109.0 72 75.0
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 7.6e-22 108.2 72 75.0
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 9.9e-22 107.8 72 75.0
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 9.9e-22 107.8 72 79.2
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 9.9e-22 107.8 72 73.6
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 2.2e-21 106.7 65 81.5
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 2.2e-21 106.7 83 68.7
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 2.9e-21 106.3 61 82.0
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 2.9e-21 106.3 71 73.2
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 2.9e-21 106.3 72 72.2
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 2.9e-21 106.3 61 83.6
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 3.8e-21 105.9 72 75.0
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 3.8e-21 105.9 72 76.4
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 3.8e-21 105.9 72 76.4
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 6.4e-21 105.1 89 66.3
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 6.4e-21 105.1 72 73.6
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 8.4e-21 104.8 73 74.0
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 8.4e-21 104.8 73 74.0
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 8.4e-21 104.8 73 74.0
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 8.4e-21 104.8 70 75.7
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 8.4e-21 104.8 72 76.4
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.1e-20 104.4 72 73.6
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.4e-20 104.0 72 73.6
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.9e-20 103.6 72 73.6
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 3.2e-20 102.8 59 81.4
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 3.2e-20 102.8 66 74.2
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 3.2e-20 102.8 61 80.3
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 4.2e-20 102.4 61 82.0
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 4.2e-20 102.4 72 76.4
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 5.4e-20 102.1 59 81.4
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 5.4e-20 102.1 66 75.8
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 7.1e-20 101.7 61 78.7
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 7.1e-20 101.7 61 80.3
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 7.1e-20 101.7 61 78.7
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 9.3e-20 101.3 61 80.3
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 9.3e-20 101.3 61 80.3
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 1.2e-19 100.9 65 75.4
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 1.6e-19 100.5 59 78.0
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 2.1e-19 100.1 59 78.0
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 2.7e-19 99.8 59 79.7
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 2.7e-19 99.8 59 79.7
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 2.7e-19 99.8 59 79.7
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 2.7e-19 99.8 65 73.8
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.7e-19 99.8 72 75.0
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 2.7e-19 99.8 61 82.0
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.6e-19 99.0 50 98.0
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.6e-19 99.0 89 61.8
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 6.0e-19 98.6 67 73.1
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 6.0e-19 98.6 67 73.1
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 6.0e-19 98.6 72 72.2
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 6.0e-19 98.6 71 73.2
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 7.8e-19 98.2 59 83.1
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 7.8e-19 98.2 59 74.6
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.0e-18 97.8 65 75.4
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 1.0e-18 97.8 61 82.0
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.0e-18 97.8 61 78.7
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 1.3e-18 97.4 65 73.8
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.3e-18 97.4 72 73.6
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 1.7e-18 97.1 66 69.7
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 1.7e-18 97.1 66 69.7
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.7e-18 97.1 72 72.2
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.7e-18 97.1 70 74.3
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 2.3e-18 96.7 70 68.6
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 3.9e-18 95.9 53 83.0
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 3.9e-18 95.9 53 83.0
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 3.9e-18 95.9 54 81.5
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 3.9e-18 95.9 53 84.9
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.5e-17 94.0 71 70.4
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 1.5e-17 94.0 61 78.7
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.9e-17 93.6 69 69.6
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 2.5e-17 93.2 58 79.3
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 3.3e-17 92.8 66 74.2
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 3.3e-17 92.8 56 82.1
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 3.3e-17 92.8 57 75.4
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 5.6e-17 92.0 78 65.4
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 7.3e-17 91.7 66 68.2
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 9.6e-17 91.3 55 76.4
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 9.6e-17 91.3 68 69.1
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 9.6e-17 91.3 68 69.1
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 9.6e-17 91.3 73 65.8
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 1.6e-16 90.5 55 76.4
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 1.6e-16 90.5 72 62.5
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 4.8e-16 89.0 59 74.6
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 4.8e-16 89.0 62 75.8
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 6.2e-16 88.6 49 83.7
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.8e-15 87.0 65 69.2
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 4.0e-15 85.9 65 69.2
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 5.3e-15 85.5 52 84.6
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 6.9e-15 85.1 51 74.5
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 9.0e-15 84.7 131 45.0
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 9.0e-15 84.7 131 45.0
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 1.5e-14 84.0 64 62.5
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 2.0e-14 83.6 61 72.1
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 2.6e-14 83.2 73 61.6
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 4.5e-14 82.4 87 57.5
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 5.8e-14 82.0 68 69.1
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 9.9e-14 81.3 70 57.1
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 9.9e-14 81.3 55 69.1
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 2.2e-13 80.1 55 67.3
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.2e-13 80.1 78 55.1
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 2.9e-13 79.7 55 72.7
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 4.9e-13 79.0 47 80.9
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 8.4e-13 78.2 57 68.4
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 1.4e-12 77.4 58 69.0
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.4e-12 77.4 55 65.5
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 2.4e-12 76.6 89 53.9
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.2e-12 76.3 72 62.5
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 5.4e-12 75.5 55 58.2
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 7.1e-12 75.1 44 84.1
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 1.2e-11 74.3 46 73.9
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.2e-11 74.3 48 77.1
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.6e-11 73.9 67 58.2
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 2.7e-11 73.2 40 85.0
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 3.5e-11 72.8 68 60.3
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 4.6e-11 72.4 58 67.2
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 6.0e-11 72.0 43 83.7
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.0e-10 71.2 50 72.0
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.0e-10 71.2 51 68.6
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 1.8e-10 70.5 59 62.7
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 2.3e-10 70.1 98 43.9
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 2.3e-10 70.1 59 66.1
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 3.0e-10 69.7 38 84.2
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 3.0e-10 69.7 38 84.2
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 3.9e-10 69.3 58 56.9
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 6.7e-10 68.6 57 59.6
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 8.7e-10 68.2 50 74.0
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 8.7e-10 68.2 62 56.5
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 1.1e-09 67.8 86 46.5
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.5e-09 67.4 58 53.4
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 1.9e-09 67.0 58 55.2
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 5.6e-09 65.5 55 56.4
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 7.4e-09 65.1 54 59.3
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 9.6e-09 64.7 61 59.0
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 1.3e-08 64.3 59 52.5
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 2.8e-08 63.2 55 60.0
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 4.8e-08 62.4 59 52.5
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 4.8e-08 62.4 54 57.4
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 8.1e-08 61.6 63 52.4
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 1.1e-07 61.2 73 46.6
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 1.4e-07 60.8 38 73.7
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 2.4e-07 60.1 57 52.6
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.4e-07 60.1 57 56.1
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 4.0e-07 59.3 55 52.7
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 9.0e-07 58.2 55 50.9
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 2.0e-06 57.0 37 73.0
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 2.6e-06 56.6 68 51.5


User provided reference genes

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