Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.7e-55 218.4 107 100.0
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.3e-54 216.1 107 98.1
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 3.0e-54 214.9 107 98.1
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.1e-53 213.0 107 98.1
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.8e-52 208.4 107 96.3
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 6.2e-44 180.6 116 77.6
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 1.0e-38 163.3 122 68.0
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 1.6e-36 156.0 118 67.8
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 1.2e-34 149.8 115 62.6
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 7.6e-34 147.1 121 59.5
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 2.2e-33 145.6 118 63.6
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 2.2e-33 145.6 118 59.3
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 2.2e-33 145.6 117 61.5
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 2.9e-33 145.2 115 60.0
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 4.9e-33 144.4 118 61.0
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 4.9e-33 144.4 119 59.7
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 4.9e-33 144.4 116 62.1
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 1.1e-32 143.3 120 60.8
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 1.1e-32 143.3 110 64.5
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 1.1e-32 143.3 121 62.0
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 1.9e-32 142.5 119 59.7
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 2.4e-32 142.1 118 60.2
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 3.2e-32 141.7 121 62.0
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 4.2e-32 141.4 125 58.4
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 5.4e-32 141.0 114 64.0
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 5.4e-32 141.0 118 60.2
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 5.4e-32 141.0 121 62.0
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 7.1e-32 140.6 112 62.5
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 9.3e-32 140.2 114 64.9
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 9.3e-32 140.2 120 61.7
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 9.3e-32 140.2 114 62.3
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 9.3e-32 140.2 117 59.8
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 1.2e-31 139.8 118 59.3
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 1.2e-31 139.8 115 61.7
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.6e-31 139.4 116 62.1
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 1.6e-31 139.4 118 60.2
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 2.1e-31 139.0 119 59.7
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 2.1e-31 139.0 121 56.2
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 2.7e-31 138.7 118 60.2
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 3.5e-31 138.3 124 58.9
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 3.5e-31 138.3 115 60.9
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 6.0e-31 137.5 115 60.9
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 7.8e-31 137.1 116 61.2
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 7.8e-31 137.1 120 57.5
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 1.0e-30 136.7 118 57.6
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 1.7e-30 136.0 118 57.6
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 1.7e-30 136.0 118 57.6
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 1.7e-30 136.0 118 59.3
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.7e-30 136.0 116 59.5
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 1.7e-30 136.0 119 58.8
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 2.3e-30 135.6 118 56.8
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 3.0e-30 135.2 115 56.5
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 3.9e-30 134.8 121 58.7
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 5.1e-30 134.4 115 58.3
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 5.1e-30 134.4 116 58.6
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 8.7e-30 133.7 88 69.3
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 8.7e-30 133.7 121 54.5
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 8.7e-30 133.7 120 58.3
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 8.7e-30 133.7 133 53.4
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 1.1e-29 133.3 115 57.4
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 1.5e-29 132.9 115 57.4
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 1.9e-29 132.5 115 58.3
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.9e-29 132.5 112 62.5
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 1.9e-29 132.5 115 60.0
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 5.6e-29 131.0 108 61.1
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 9.6e-29 130.2 108 60.2
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 1.3e-28 129.8 110 55.5
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 1.3e-28 129.8 132 52.3
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.3e-28 129.8 118 57.6
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 1.3e-28 129.8 108 59.3
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 1.6e-28 129.4 121 57.9
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 1.6e-28 129.4 121 56.2
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 8.1e-28 127.1 118 55.1
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.1e-27 126.7 125 54.4
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 1.4e-27 126.3 115 58.3
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 1.4e-27 126.3 120 55.8
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 1.8e-27 125.9 113 54.9
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.8e-27 125.9 120 53.3
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 2.4e-27 125.6 113 54.9
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 3.1e-27 125.2 118 55.9
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 4.0e-27 124.8 123 53.7
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 4.0e-27 124.8 114 57.0
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.0e-27 124.8 112 60.7
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 5.3e-27 124.4 131 55.0
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 1.5e-26 122.9 120 53.3
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 3.4e-26 121.7 112 50.9
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 3.4e-26 121.7 123 52.8
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 9.9e-26 120.2 121 52.9
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 2.9e-25 118.6 128 50.0
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 3.8e-25 118.2 113 52.2
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 4.9e-25 117.9 109 53.2
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 6.4e-25 117.5 108 52.8
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 1.1e-24 116.7 116 49.1
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 2.4e-24 115.5 113 48.7
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 3.2e-24 115.2 111 56.8
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 5.4e-24 114.4 120 52.5
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 5.4e-24 114.4 126 51.6
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 9.3e-24 113.6 115 56.5
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 9.3e-24 113.6 117 51.3
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 1.2e-23 113.2 114 55.3
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 2.1e-23 112.5 121 51.2
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 2.7e-23 112.1 112 53.6
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 2.7e-23 112.1 126 50.8
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 7.9e-23 110.5 118 50.0
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.8e-22 109.4 110 52.7
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 2.3e-22 109.0 114 51.8
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 2.3e-22 109.0 121 49.6
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 3.0e-22 108.6 121 50.4
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 3.0e-22 108.6 111 51.4
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 3.9e-22 108.2 107 49.5
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 8.7e-22 107.1 96 54.2
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.3e-21 105.1 105 53.3
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.3e-20 103.2 136 40.4
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 1.6e-20 102.8 127 44.1
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 2.8e-20 102.1 65 66.2
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 2.8e-20 102.1 89 55.1
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 8.1e-20 100.5 90 51.1
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 1.5e-18 96.3 114 43.9
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 2.0e-18 95.9 107 45.8
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 2.6e-18 95.5 127 40.9
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 1.1e-16 90.1 127 40.9
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 5.5e-16 87.8 102 42.2
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.6e-15 86.3 85 43.5
FAN13G2804 Fragaria x ananassa HOM05D005269 ORTHO05D006429 5.1e-14 81.3 43 97.7
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 2.5e-13 79.0 107 41.1
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 2.1e-12 75.9 102 38.2
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 4.8e-12 74.7 99 40.4
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 2.4e-11 72.4 106 40.6
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 2.4e-11 72.4 88 37.5
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 4.0e-11 71.6 82 52.4
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 4.0e-11 71.6 55 54.5
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 4.0e-11 71.6 65 52.3
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 9.0e-11 70.5 90 35.6
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 1.2e-10 70.1 93 38.7
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.5e-10 69.7 46 65.2
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 5.8e-10 67.8 76 50.0
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 1.3e-09 66.6 124 29.8
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 1.9e-08 62.8 62 43.5
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 3.2e-08 62.0 118 34.7
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 4.2e-08 61.6 94 36.2
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 2.7e-07 58.9 60 45.0


User provided reference genes

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