Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2155 Fragaria x ananassa HOM05D002544 ORTHO05D007277 5.7e-71 270.8 135 100.0
FvH4_1g29991 Fragaria vesca HOM05D002544 ORTHO05D007277 2.3e-51 205.7 102 99.0
FAN19G1253 Fragaria x ananassa HOM05D002544 ORTHO05D007277 2.3e-51 205.7 102 99.0
FAN26G0021 Fragaria x ananassa HOM05D002544 ORTHO05D007277 2.3e-51 205.7 102 99.0
FAN28G1946 Fragaria x ananassa HOM05D002544 ORTHO05D007277 1.5e-50 203.0 102 98.0
RcHm_v2.0_Chr3g0492321 Rosa chinensis HOM05D002544 ORTHO05D007277 8.1e-49 197.2 102 95.1
MD09G1267400 Malus domestica HOM05D002544 ORTHO05D007277 2.0e-47 192.6 101 92.1
Prupe.3G165000 Prunus persica HOM05D002544 ORTHO05D007277 2.6e-47 192.2 101 92.1
TAR374G1472 Trochodendron aralioides HOM05D002544 ORTHO05D007277 5.8e-47 191.0 102 89.2
Haze_14287 Corylus avellana HOM05D002544 ORTHO05D007277 1.3e-46 189.9 101 89.1
QL03p020249 Quercus lobata HOM05D002544 ORTHO05D007277 1.3e-46 189.9 101 89.1
BcaB06g27087 Brassica carinata HOM05D002544 ORTHO05D007277 1.7e-46 189.5 101 87.1
A04p10670 Brassica napus HOM05D002544 ORTHO05D007277 1.7e-46 189.5 101 87.1
BraA04t16734Z Brassica rapa HOM05D002544 ORTHO05D007277 1.7e-46 189.5 101 87.1
Thhalv10027822m.g Eutrema salsugineum HOM05D002544 ORTHO05D007277 1.7e-46 189.5 101 87.1
Migut.K00934 Erythranthe guttata HOM05D002544 ORTHO05D007277 2.2e-46 189.1 102 89.2
Lalb_Chr04g0251431 Lupinus albus HOM05D002544 ORTHO05D007277 2.9e-46 188.7 102 88.2
Manes.17G002000 Manihot esculenta HOM05D002544 ORTHO05D007277 2.9e-46 188.7 101 87.1
AL7G46290 Arabidopsis lyrata HOM05D002544 ORTHO05D007277 3.7e-46 188.3 101 86.1
HanXRQChr16g0532851 Helianthus annuus HOM05D002544 ORTHO05D007277 3.7e-46 188.3 102 85.3
Lj2C517G4 Lonicera japonica HOM05D002544 ORTHO05D007277 3.7e-46 188.3 130 73.1
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 3.7e-46 188.3 102 87.3
PGR004G1667 Punica granatum HOM05D002544 ORTHO05D007277 4.9e-46 188.0 101 88.1
Aa31LG9G17540 Aethionema arabicum HOM05D002544 ORTHO05D007277 6.4e-46 187.6 101 87.1
Potri.004G083200 Populus trichocarpa HOM05D002544 ORTHO05D007277 8.3e-46 187.2 101 86.1
Sp7g04620 Schrenkiella parvula HOM05D002544 ORTHO05D007277 8.3e-46 187.2 101 86.1
Nitab4.5_0010055g0010 Nicotiana tabacum HOM05D002544 ORTHO05D007277 1.1e-45 186.8 102 88.2
QL02p059524 Quercus lobata HOM05D002544 ORTHO05D007277 1.1e-45 186.8 101 88.1
MSTRG.15655 Avicennia marina HOM05D002544 ORTHO05D007277 1.4e-45 186.4 103 85.4
ECA240G4132 Erigeron canadensis HOM05D002544 ORTHO05D004529 1.9e-45 186.0 102 84.3
Peaxi162Scf00424g00516 Petunia axillaris HOM05D002544 ORTHO05D007277 1.9e-45 186.0 102 87.3
SalBow5G3645 Salvia bowleyana HOM05D002544 ORTHO05D007277 1.9e-45 186.0 102 87.3
CAN.G733.10 Capsicum annuum HOM05D002544 ORTHO05D007277 2.4e-45 185.7 102 87.3
CARHR215380 Cardamine hirsuta HOM05D002544 ORTHO05D007277 2.4e-45 185.7 101 85.1
Nitab4.5_0000777g0030 Nicotiana tabacum HOM05D002544 ORTHO05D007277 2.4e-45 185.7 102 87.3
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 2.4e-45 185.7 129 71.3
BcaC02g09580 Brassica carinata HOM05D002544 ORTHO05D007277 3.2e-45 185.3 101 86.1
C04p44390 Brassica napus HOM05D002544 ORTHO05D007277 3.2e-45 185.3 101 86.1
BolC4t26010H Brassica oleracea HOM05D002544 ORTHO05D007277 3.2e-45 185.3 101 86.1
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 3.2e-45 185.3 102 85.3
Carub.0007s3270 Capsella rubella HOM05D002544 ORTHO05D007277 4.1e-45 184.9 101 84.2
ClCG05G002460 Citrullus lanatus HOM05D002544 ORTHO05D007277 4.1e-45 184.9 99 89.9
MELO3C006210.2 Cucumis melo HOM05D002544 ORTHO05D007277 4.1e-45 184.9 99 89.9
DCAR_010067 Daucus carota HOM05D002544 ORTHO05D007277 4.1e-45 184.9 102 87.3
Lsat_1_v5_gn_3_64121 Lactuca sativa HOM05D002544 ORTHO05D007277 4.1e-45 184.9 102 84.3
Sed0005203 Sechium edule HOM05D002544 ORTHO05D007277 4.1e-45 184.9 100 88.0
Actinidia17195 Actinidia chinensis HOM05D002544 ORTHO05D007277 5.4e-45 184.5 102 85.3
Ciclev10003868m.g Citrus clementina HOM05D002544 ORTHO05D007277 5.4e-45 184.5 101 84.2
arahy.Tifrunner.gnm1.ann1.F4VH9C Arachis hypogaea HOM05D002544 ORTHO05D007277 7.1e-45 184.1 102 85.3
Cc07_g13180 Coffea canephora HOM05D002544 ORTHO05D007277 7.1e-45 184.1 102 86.3
Hma1.2p1_1214F.1_g267540 Hydrangea macrophylla HOM05D002544 ORTHO05D007277 7.1e-45 184.1 102 86.3
Hma1.2p1_1443F.1_g283880 Hydrangea macrophylla HOM05D002544 ORTHO05D007277 7.1e-45 184.1 102 86.3
Hma1.2p1_1443F.1_g283890 Hydrangea macrophylla HOM05D002544 ORTHO05D007277 7.1e-45 184.1 102 86.3
Thecc.04G063800 Theobroma cacao HOM05D002544 ORTHO05D007277 7.1e-45 184.1 101 86.1
THA.LOC104823837 Tarenaya hassleriana HOM05D002544 ORTHO05D007277 9.2e-45 183.7 102 84.3
vmacro20588 Vaccinium macrocarpon HOM05D002544 ORTHO05D007277 9.2e-45 183.7 102 85.3
Cpa.g.sc116.80 Carica papaya HOM05D002544 ORTHO05D007277 1.6e-44 183.0 101 85.1
Duzib138G1710 Durio zibethinus HOM05D002544 ORTHO05D007277 1.6e-44 183.0 101 86.1
Solyc05g051230.4 Solanum lycopersicum HOM05D002544 ORTHO05D007277 1.6e-44 183.0 102 86.3
Sopen05g029600 Solanum pennellii HOM05D002544 ORTHO05D007277 1.6e-44 183.0 102 86.3
HPP92_021315 Vanilla planifolia HOM05D002544 ORTHO05D007277 1.6e-44 183.0 102 85.3
Aqoxy3G04065 Aquilegia oxysepala HOM05D002544 ORTHO05D007277 2.1e-44 182.6 102 84.3
arahy.Tifrunner.gnm1.ann1.8QPJ7C Arachis hypogaea HOM05D002544 ORTHO05D007277 2.7e-44 182.2 102 84.3
arahy.Tifrunner.gnm1.ann1.N8969K Arachis hypogaea HOM05D002544 ORTHO05D007277 2.7e-44 182.2 102 84.3
arahy.Tifrunner.gnm1.ann1.Y37JRT Arachis hypogaea HOM05D002544 ORTHO05D007277 2.7e-44 182.2 102 84.3
CSS0009784 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007277 2.7e-44 182.2 102 85.3
CSS0024967 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007277 2.7e-44 182.2 102 85.3
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 2.7e-44 182.2 99 89.9
Eucgr.F02880 Eucalyptus grandis HOM05D002544 ORTHO05D007277 2.7e-44 182.2 101 83.2
Gohir.A11G168900 Gossypium hirsutum HOM05D002544 ORTHO05D007277 3.5e-44 181.8 101 86.1
GSVIVG01015995001 Vitis vinifera HOM05D002544 ORTHO05D007277 6.0e-44 181.0 102 84.3
Gohir.D11G175100 Gossypium hirsutum HOM05D002544 ORTHO05D007277 7.8e-44 180.6 101 85.1
Gorai.007G187700 Gossypium raimondii HOM05D002544 ORTHO05D007277 7.8e-44 180.6 101 85.1
Glyma.14G212800 Glycine max HOM05D002544 ORTHO05D007277 1.0e-43 180.3 101 84.2
PGSC0003DMG401014608 Solanum tuberosum HOM05D002544 ORTHO05D007277 1.0e-43 180.3 102 85.3
AT5G37530 Arabidopsis thaliana HOM05D002544 ORTHO05D007277 1.3e-43 179.9 101 82.2
Ca_26386_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007277 1.3e-43 179.9 101 85.1
LjContig00141g0018139 Lotus japonicus HOM05D002544 ORTHO05D007277 1.3e-43 179.9 101 84.2
Atru.chr1.2027 Acer truncatum HOM05D002544 ORTHO05D007277 1.7e-43 179.5 101 84.2
TWI74G0587 Tripterygium wilfordii HOM05D002544 ORTHO05D007277 2.3e-43 179.1 102 84.3
ATR0021G008 Amborella trichopoda HOM05D002544 ORTHO05D007277 3.0e-43 178.7 101 84.2
Hund02530 Selenicereus undatus HOM05D002544 ORTHO05D007277 3.0e-43 178.7 103 81.6
Medtr5g077840 Medicago truncatula HOM05D002544 ORTHO05D007277 5.1e-43 177.9 101 84.2
EL10Ac5g11231 Beta vulgaris HOM05D002544 ORTHO05D007277 6.6e-43 177.6 103 78.6
Sc04g0005090 Simmondsia chinensis HOM05D002544 ORTHO05D007277 6.6e-43 177.6 103 80.6
Glyma.02G243700 Glycine max HOM05D002544 ORTHO05D007277 1.1e-42 176.8 101 83.2
Phvul.008G237900 Phaseolus vulgaris HOM05D002544 ORTHO05D007277 1.1e-42 176.8 102 82.4
CDE05G0883 Ceratophyllum demersum HOM05D002544 ORTHO05D007277 2.5e-42 175.6 102 80.4
COL.COLO4_11381 Corchorus olitorius HOM05D002544 ORTHO05D007277 2.5e-42 175.6 103 82.5
AUR62032172 Chenopodium quinoa HOM05D002544 ORTHO05D007277 3.3e-42 175.3 103 76.7
Zm00001eb280220 Zea mays HOM05D002544 ORTHO05D007277 1.2e-41 173.3 117 76.1
AUR62036929 Chenopodium quinoa HOM05D002544 ORTHO05D007277 2.1e-41 172.6 103 74.8
VMungo0647G0515 Vigna mungo HOM05D002544 ORTHO05D007277 2.8e-41 172.2 101 82.2
SEGI_40484 Sequoiadendron giganteum HOM05D002544 ORTHO05D007277 8.1e-41 170.6 102 79.4
SHI30127 Sapria himalayana HOM05D002544 ORTHO05D007277 8.9e-40 167.2 102 77.5
unitig_32.g10720 Utricularia gibba HOM05D002544 ORTHO05D007277 9.9e-39 163.7 111 71.2
PSO421G0270 Papaver somniferum HOM05D002544 ORTHO05D007277 2.2e-38 162.5 103 72.8
PSO063G7385 Papaver somniferum HOM05D002544 ORTHO05D007277 2.9e-38 162.2 103 71.8
AagrBONN_evm.TU.Sc2ySwM_228.346 Anthoceros agrestis HOM05D002544 ORTHO05D007277 1.1e-37 160.2 101 75.2
Pp3c14_20390 Physcomitrium patens HOM05D002544 ORTHO05D007277 1.1e-37 160.2 102 72.5
SMO367G0951 Selaginella moellendorffii HOM05D002544 ORTHO05D007277 2.4e-37 159.1 102 73.5
Mapoly0047s0092 Marchantia polymorpha HOM05D002544 ORTHO05D007277 9.2e-37 157.1 102 72.5
Ah.11g047270 Amaranthus hybridus HOM05D002544 ORTHO05D007277 1.0e-27 127.1 103 60.2
CANSAT54G1265 Cannabis sativa HOM05D002544 ORTHO05D007277 1.3e-22 110.2 65 80.0
TPR.G13780 Trifolium pratense HOM05D002544 ORTHO05D007277 1.3e-22 110.2 63 85.7
CiPaw.03G074400 Carya illinoinensis HOM05D002544 ORTHO05D007277 6.4e-22 107.8 53 92.5
Cre03.g159400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007277 2.4e-16 89.4 102 49.0
CBR_g12327 Chara braunii HOM05D002544 ORTHO05D007277 2.0e-15 86.3 106 42.5
MCO01G178 Micromonas commoda HOM05D002544 ORTHO05D007277 6.4e-14 81.3 102 43.1
Gohir.D01G148000 Gossypium hirsutum HOM05D002544 ORTHO05D009109 1.4e-13 80.1 40 85.0
Gohir.D11G247700 Gossypium hirsutum HOM05D002544 ORTHO05D047097 2.4e-13 79.3 40 85.0
Gorai.012G096900 Gossypium raimondii HOM05D002544 ORTHO05D047097 3.2e-13 79.0 39 87.2
Gohir.D04G086901 Gossypium hirsutum HOM05D002544 ORTHO05D007277 4.2e-13 78.6 39 84.6
Gohir.D05G353450 Gossypium hirsutum HOM05D002544 ORTHO05D007277 4.2e-13 78.6 40 82.5
Gohir.D13G118500 Gossypium hirsutum HOM05D002544 ORTHO05D007277 4.2e-13 78.6 40 82.5
Gorai.001G106400 Gossypium raimondii HOM05D001410 ORTHO05D011023 4.2e-13 78.6 40 82.5
Gorai.009G385900 Gossypium raimondii HOM05D002544 ORTHO05D007277 9.3e-13 77.4 39 84.6
PRCOL_00003184 Prasinoderma coloniale HOM05D002544 ORTHO05D007277 9.3e-13 77.4 101 41.6
Gohir.D12G140050 Gossypium hirsutum HOM05D001410 ORTHO05D011023 2.1e-12 76.3 40 77.5
Gorai.008G151500 Gossypium raimondii HOM05D001410 ORTHO05D011023 2.1e-12 76.3 40 80.0
Gorai.013G132900 Gossypium raimondii HOM05D002544 ORTHO05D007277 2.1e-12 76.3 40 80.0
MBI13_g24910_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007277 3.5e-12 75.5 45 75.6
Gohir.D05G146400 Gossypium hirsutum HOM05D000431 ORTHO05D010836 1.0e-11 73.9 40 80.0
Gorai.001G109600 Gossypium raimondii HOM05D000431 ORTHO05D010836 1.0e-11 73.9 40 80.0
COL.COLO4_33783 Corchorus olitorius HOM05D002544 ORTHO05D007277 2.2e-06 56.2 53 54.7
Gohir.D13G173600 Gossypium hirsutum HOM05D001410 ORTHO05D011023 2.2e-06 56.2 29 82.8
Gorai.N018200 Gossypium raimondii HOM05D002544 ORTHO05D007277 2.2e-06 56.2 29 82.8


User provided reference genes

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