Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2108 Fragaria x ananassa HOM05D000135 ORTHO05D000816 1.3e-44 183.0 112 100.0
FAN23G0222 Fragaria x ananassa HOM05D000135 ORTHO05D000816 8.2e-39 163.7 102 100.0
FvH4_1g14170 Fragaria vesca HOM05D000135 ORTHO05D000816 4.1e-38 161.4 101 100.0
FAN19G1023 Fragaria x ananassa HOM05D000135 ORTHO05D000816 4.1e-38 161.4 101 100.0
FAN28G2716 Fragaria x ananassa HOM05D000135 ORTHO05D000816 4.1e-38 161.4 101 100.0
RcHm_v2.0_Chr2g0102831 Rosa chinensis HOM05D000135 ORTHO05D000816 7.2e-35 150.6 107 88.8
Prupe.7G147800 Prunus persica HOM05D000135 ORTHO05D000816 1.1e-24 116.7 101 78.2
MD15G1270300 Malus domestica HOM05D000135 ORTHO05D000816 9.1e-22 107.1 95 62.1
Duzib187G0154 Durio zibethinus HOM05D000135 ORTHO05D000816 2.9e-20 102.1 90 57.8
Sabra07G0027700 Salix brachista HOM05D000135 ORTHO05D000816 1.9e-19 99.4 95 57.9
Potri.007G031900 Populus trichocarpa HOM05D000135 ORTHO05D000816 5.5e-19 97.8 95 68.4
Thecc.01G042700 Theobroma cacao HOM05D000135 ORTHO05D000816 1.2e-18 96.7 90 58.9
CiPaw.01G031700 Carya illinoinensis HOM05D000135 ORTHO05D000816 3.6e-18 95.1 98 69.4
Duzib147G0465 Durio zibethinus HOM05D000135 ORTHO05D000816 3.6e-18 95.1 92 60.9
Manes.12G099300 Manihot esculenta HOM05D000135 ORTHO05D000816 3.6e-18 95.1 93 57.0
QL06p044671 Quercus lobata HOM05D000135 ORTHO05D000816 3.6e-18 95.1 94 57.4
Gohir.A11G187200 Gossypium hirsutum HOM05D000135 ORTHO05D000816 4.7e-18 94.7 97 56.7
Gohir.D12G066900 Gossypium hirsutum HOM05D000135 ORTHO05D000816 4.7e-18 94.7 92 60.9
Gorai.007G207100 Gossypium raimondii HOM05D000135 ORTHO05D000816 6.1e-18 94.4 97 56.7
Potri.005G128100 Populus trichocarpa HOM05D000135 ORTHO05D000816 8.0e-18 94.0 92 57.6
Gorai.008G070200 Gossypium raimondii HOM05D000135 ORTHO05D000816 1.0e-17 93.6 92 60.9
Cfa004256 Carpinus fangiana HOM05D000135 ORTHO05D000816 5.2e-17 91.3 95 55.8
Gohir.D11G193700 Gossypium hirsutum HOM05D000135 ORTHO05D000816 5.2e-17 91.3 97 55.7
CiPaw.02G014500 Carya illinoinensis HOM05D000135 ORTHO05D000816 8.8e-17 90.5 91 54.9
Gohir.A12G066500 Gossypium hirsutum HOM05D000135 ORTHO05D000816 1.2e-16 90.1 92 54.3
Haze_15145 Corylus avellana HOM05D000135 ORTHO05D000816 1.5e-16 89.7 95 62.1
TAR628G0482 Trochodendron aralioides HOM05D000135 ORTHO05D000816 1.5e-16 89.7 90 66.7
Atru.chr3.502 Acer truncatum HOM05D000135 ORTHO05D000816 2.6e-16 89.0 104 58.7
Rhsim08G0110900 Rhododendron simsii HOM05D000135 ORTHO05D000816 4.4e-16 88.2 89 67.4
Manes.13G135200 Manihot esculenta HOM05D000135 ORTHO05D000816 5.7e-16 87.8 105 48.6
COL.COLO4_22149 Corchorus olitorius HOM05D000135 ORTHO05D000816 7.5e-16 87.4 98 59.2
Duzib264G0836 Durio zibethinus HOM05D000135 ORTHO05D000816 1.3e-15 86.7 97 52.6
Lj4g0009732 Lotus japonicus HOM05D000135 ORTHO05D000816 2.8e-15 85.5 94 50.0
Medtr8g078270 Medicago truncatula HOM05D000135 ORTHO05D000816 2.8e-15 85.5 93 54.8
Manes.13G135300 Manihot esculenta HOM05D000135 ORTHO05D000816 3.7e-15 85.1 94 66.0
Aqoxy5G01722 Aquilegia oxysepala HOM05D000135 ORTHO05D000816 6.3e-15 84.3 87 50.6
Solyc03g044900.3 Solanum lycopersicum HOM05D000135 ORTHO05D000816 6.3e-15 84.3 93 50.5
Thecc.08G021300 Theobroma cacao HOM05D000135 ORTHO05D000816 1.4e-14 83.2 96 49.0
Glyma.02G059600 Glycine max HOM05D000135 ORTHO05D000816 3.1e-14 82.0 94 61.7
Nn1g05120 Nelumbo nucifera HOM05D000135 ORTHO05D000816 4.1e-14 81.6 96 51.0
Ca_22249_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000816 5.3e-14 81.3 91 51.6
Rhsim08G0111000 Rhododendron simsii HOM05D000135 ORTHO05D000816 5.3e-14 81.3 85 57.6
Eucgr.H01924 Eucalyptus grandis HOM05D000135 ORTHO05D000816 7.0e-14 80.9 99 50.5
Nitab4.5_0000382g0130 Nicotiana tabacum HOM05D000135 ORTHO05D000816 9.1e-14 80.5 95 57.9
Sp5g11460 Schrenkiella parvula HOM05D000135 ORTHO05D000816 9.1e-14 80.5 97 50.5
Ciclev10026510m.g Citrus clementina HOM05D000135 ORTHO05D000816 1.2e-13 80.1 45 82.2
Psat4g090880 Pisum sativum HOM05D000135 ORTHO05D000816 1.2e-13 80.1 95 52.6
PGSC0003DMG401022924 Solanum tuberosum HOM05D000135 ORTHO05D000816 1.2e-13 80.1 94 52.1
Dinv39940 Davidia involucrata HOM05D000225 ORTHO05D001817 2.7e-13 79.0 92 63.0
Duzib093G1327 Durio zibethinus HOM05D000135 ORTHO05D000816 3.5e-13 78.6 90 47.8
Nitab4.5_0004052g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000816 3.5e-13 78.6 81 58.0
TPR.G34035 Trifolium pratense HOM05D000135 ORTHO05D000816 3.5e-13 78.6 92 52.2
AT3G50770 Arabidopsis thaliana HOM05D000135 ORTHO05D000816 4.5e-13 78.2 97 48.5
CARHR160280 Cardamine hirsuta HOM05D000135 ORTHO05D000816 4.5e-13 78.2 95 49.5
Glyma.16G142500 Glycine max HOM05D000135 ORTHO05D000816 4.5e-13 78.2 93 48.4
GSVIVG01019035001 Vitis vinifera HOM05D000135 ORTHO05D000816 4.5e-13 78.2 84 52.4
Thhalv10010726m.g Eutrema salsugineum HOM05D000135 ORTHO05D000816 7.7e-13 77.4 97 50.5
Aqoxy5G01719 Aquilegia oxysepala HOM05D000135 ORTHO05D000816 1.0e-12 77.0 87 48.3
Cc07_g05200 Coffea canephora HOM05D000135 ORTHO05D000816 1.3e-12 76.6 49 69.4
TAR381G0170 Trochodendron aralioides HOM05D000135 ORTHO05D000816 1.3e-12 76.6 93 58.1
MBI16_g10980_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 2.2e-12 75.9 87 47.1
Rhsim01G0026900 Rhododendron simsii HOM05D000135 ORTHO05D000816 2.2e-12 75.9 97 47.4
PSO513G0146 Papaver somniferum HOM05D000135 ORTHO05D000816 3.8e-12 75.1 49 67.3
Lalb_Chr05g0227451 Lupinus albus HOM05D000135 ORTHO05D000816 6.5e-12 74.3 98 42.9
PSO339G1803 Papaver somniferum HOM05D000135 ORTHO05D000816 8.5e-12 73.9 101 41.6
Oeu032892.1 Olea europaea HOM05D000135 ORTHO05D000816 1.9e-11 72.8 50 66.0
Cc10_g03450 Coffea canephora HOM05D000135 ORTHO05D000816 2.5e-11 72.4 91 62.6
Nn5g29482 Nelumbo nucifera HOM05D000135 ORTHO05D000816 3.2e-11 72.0 107 48.6
Peaxi162Scf00589g00519 Petunia axillaris HOM05D000135 ORTHO05D000816 3.2e-11 72.0 94 58.5
Phvul.003G251000 Phaseolus vulgaris HOM05D000135 ORTHO05D000816 3.2e-11 72.0 95 60.0
ECA232G4401 Erigeron canadensis HOM05D000135 ORTHO05D000816 4.2e-11 71.6 47 72.3
AL5G30990 Arabidopsis lyrata HOM05D000135 ORTHO05D000816 5.5e-11 71.2 98 49.0
Gohir.A06G012500 Gossypium hirsutum HOM05D000135 ORTHO05D000816 5.5e-11 71.2 91 44.0
Gohir.D06G009900 Gossypium hirsutum HOM05D000135 ORTHO05D000816 5.5e-11 71.2 91 44.0
Gorai.010G012800 Gossypium raimondii HOM05D000135 ORTHO05D000816 5.5e-11 71.2 91 44.0
C07p45920 Brassica napus HOM05D000135 ORTHO05D000816 7.2e-11 70.9 97 44.3
BolC7t45112H Brassica oleracea HOM05D000135 ORTHO05D000816 7.2e-11 70.9 97 44.3
HanXRQChr09g0265091 Helianthus annuus HOM05D000135 ORTHO05D000816 7.2e-11 70.9 46 73.9
Carub.0005s1711 Capsella rubella HOM05D000135 ORTHO05D000816 1.2e-10 70.1 98 49.0
Lsat_1_v5_gn_4_175540 Lactuca sativa HOM05D000135 ORTHO05D000816 1.2e-10 70.1 90 47.8
THA.LOC104819214 Tarenaya hassleriana HOM05D000135 ORTHO05D000816 1.2e-10 70.1 103 44.7
MSTRG.3396 Avicennia marina HOM05D000135 ORTHO05D000816 2.1e-10 69.3 49 65.3
BcaC06g33081 Brassica carinata HOM05D000135 ORTHO05D000816 2.1e-10 69.3 97 44.3
MBI16_g13152_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 2.1e-10 69.3 92 59.8
VMungo0251G2530 Vigna mungo HOM05D000135 ORTHO05D000816 2.1e-10 69.3 93 52.7
Aqoxy5G01725 Aquilegia oxysepala HOM05D000135 ORTHO05D000816 2.7e-10 68.9 43 72.1
Dinv36036 Davidia involucrata HOM05D000135 ORTHO05D000816 2.7e-10 68.9 88 46.6
Migut.N00521 Erythranthe guttata HOM05D000135 ORTHO05D000816 2.7e-10 68.9 85 45.9
Hma1.2p1_0652F.1_g195960 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 2.7e-10 68.9 90 47.8
Lj4P133T6 Lonicera japonica HOM05D000135 ORTHO05D000816 2.7e-10 68.9 44 72.7
arahy.Tifrunner.gnm1.ann1.Q9X278 Arachis hypogaea HOM05D000135 ORTHO05D000816 3.6e-10 68.6 100 44.0
A03p47910 Brassica napus HOM05D000135 ORTHO05D000816 3.6e-10 68.6 97 56.7
BraA03t13900Z Brassica rapa HOM05D000135 ORTHO05D000816 3.6e-10 68.6 97 56.7
MSTRG.25138 Avicennia marina HOM05D000135 ORTHO05D000816 6.1e-10 67.8 88 45.5
arahy.Tifrunner.gnm1.ann1.Q75YW2 Arachis hypogaea HOM05D000135 ORTHO05D000816 1.0e-09 67.0 100 43.0
Rhsim06G0037200 Rhododendron simsii HOM05D000135 ORTHO05D000816 3.0e-09 65.5 90 42.2
CANSAT01G0812 Cannabis sativa HOM05D000135 ORTHO05D000816 4.0e-09 65.1 114 41.2
EL10Ac6g14878 Beta vulgaris HOM05D000135 ORTHO05D000816 5.2e-09 64.7 45 68.9
MSTRG.1304 Avicennia marina HOM05D000135 ORTHO05D000816 8.8e-09 63.9 47 61.7
SalBow8G4731 Salvia bowleyana HOM05D000135 ORTHO05D000816 1.5e-08 63.2 84 42.9
Aa31LG4G18910 Aethionema arabicum HOM05D000135 ORTHO05D000816 2.0e-08 62.8 93 46.2
MBI16_g10982_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 2.0e-08 62.8 87 41.4
SalBow1G0017 Salvia bowleyana HOM05D000135 ORTHO05D000816 3.4e-08 62.0 40 72.5
Prupe.1G384400 Prunus persica HOM05D000135 ORTHO05D000816 7.5e-08 60.8 95 43.2
Actinidia15295 Actinidia chinensis HOM05D000135 ORTHO05D000816 9.8e-08 60.5 90 41.1
Cpa.g.sc64.41 Carica papaya HOM05D000135 ORTHO05D000816 1.3e-07 60.1 92 42.4
unitig_744.g24643 Utricularia gibba HOM05D000135 ORTHO05D000816 1.3e-07 60.1 45 62.2
BcaC06g33321 Brassica carinata HOM05D000135 ORTHO05D000816 2.2e-07 59.3 85 44.7
Gohir.D02G093500 Gossypium hirsutum HOM05D000135 ORTHO05D000816 2.2e-07 59.3 80 41.2
CDE02G4745 Ceratophyllum demersum HOM05D000135 ORTHO05D000816 2.8e-07 58.9 93 43.0
DCAR_010967 Daucus carota HOM05D000135 ORTHO05D000816 3.7e-07 58.5 91 42.9
Duzib116G0161 Durio zibethinus HOM05D000135 ORTHO05D000816 3.7e-07 58.5 100 42.0
Ah.03g139740 Amaranthus hybridus HOM05D000135 ORTHO05D000816 4.8e-07 58.2 65 47.7
Oeu019090.1 Olea europaea HOM05D000135 ORTHO05D000816 4.8e-07 58.2 46 54.3
Oeu019091.1 Olea europaea HOM05D000135 ORTHO05D000816 4.8e-07 58.2 46 54.3
Gorai.005G106000 Gossypium raimondii HOM05D000135 ORTHO05D000816 6.3e-07 57.8 82 40.2
Manes.18G030600 Manihot esculenta HOM05D000135 ORTHO05D000816 6.3e-07 57.8 95 43.2
unitig_37.g12968 Utricularia gibba HOM05D000135 ORTHO05D000816 6.3e-07 57.8 48 56.2
MSTRG.22288 Avicennia marina HOM05D000135 ORTHO05D000816 8.3e-07 57.4 47 55.3
Migut.C00678 Erythranthe guttata HOM05D000135 ORTHO05D000816 1.1e-06 57.0 83 41.0
CsaV3_3G044850 Cucumis sativus L. HOM05D000135 ORTHO05D000816 1.4e-06 56.6 86 38.4
MBI03_g33916_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 1.4e-06 56.6 43 62.8
COL.COLO4_26383 Corchorus olitorius HOM05D000135 ORTHO05D000816 2.4e-06 55.8 84 61.9
Sed0027148 Sechium edule HOM05D000135 ORTHO05D000816 3.1e-06 55.5 86 37.2
AUR62008025 Chenopodium quinoa HOM05D000135 ORTHO05D000816 4.1e-06 55.1 89 49.4
MELO3C003889.2 Cucumis melo HOM05D000135 ORTHO05D000816 4.1e-06 55.1 86 38.4
MBI01_g09380_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 4.1e-06 55.1 44 59.1
PGR102G2969 Punica granatum HOM05D000135 ORTHO05D000816 7.0e-06 54.3 79 59.5


User provided reference genes

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