Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 4.0e-98 362.1 284 100.0
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 1.1e-95 354.0 285 98.6
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.1e-95 354.0 285 98.6
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.2e-95 352.4 285 97.9
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 7.8e-86 321.2 288 93.8
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 3.6e-75 285.8 279 86.7
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 2.3e-74 283.1 276 85.9
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 5.8e-73 278.5 274 85.4
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 7.6e-73 278.1 265 89.8
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 4.9e-72 275.4 247 97.6
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 1.2e-70 270.8 254 90.6
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 6.6e-69 265.0 252 90.9
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 6.6e-69 265.0 252 91.3
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 1.1e-68 264.2 264 87.5
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.9e-68 263.5 252 91.7
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 4.3e-68 262.3 252 90.9
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 5.6e-68 261.9 252 90.1
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.3e-68 261.5 264 87.1
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.3e-68 261.5 252 90.9
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 7.3e-68 261.5 252 90.9
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.2e-67 260.8 266 88.0
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.2e-67 260.8 266 88.0
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 1.2e-67 260.8 263 85.9
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.6e-67 260.4 266 87.6
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 2.1e-67 260.0 252 89.3
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 2.1e-67 260.0 252 90.9
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 2.4e-66 256.5 265 77.0
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 2.4e-66 256.5 251 88.8
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 2.4e-66 256.5 252 89.7
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 3.1e-66 256.1 266 86.5
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.5e-65 253.8 251 89.6
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 2.6e-65 253.1 271 82.3
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 4.4e-65 252.3 253 87.0
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 5.8e-65 251.9 264 84.5
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 2.9e-64 249.6 264 83.7
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 2.9e-64 249.6 253 84.2
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 3.8e-64 249.2 264 84.1
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 4.9e-64 248.8 261 83.9
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 6.4e-64 248.4 264 84.5
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 6.4e-64 248.4 248 87.5
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 8.4e-64 248.1 262 84.4
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 8.4e-64 248.1 262 84.4
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 8.4e-64 248.1 265 83.4
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 3.2e-63 246.1 271 82.7
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 4.2e-63 245.7 261 83.9
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 4.2e-63 245.7 264 82.2
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 5.4e-63 245.4 262 83.6
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 7.1e-63 245.0 264 82.6
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 7.1e-63 245.0 264 83.0
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 9.3e-63 244.6 265 83.0
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 9.3e-63 244.6 265 83.0
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.2e-62 244.2 265 84.2
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.6e-62 243.8 262 83.2
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.1e-62 243.4 264 80.7
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.1e-62 243.4 264 80.7
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.5e-62 242.7 265 83.8
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 4.6e-62 242.3 250 83.6
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 7.8e-62 241.5 264 79.9
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 7.8e-62 241.5 264 79.9
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 7.8e-62 241.5 262 82.4
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 3.0e-61 239.6 263 82.1
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 1.5e-60 237.3 252 83.3
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 3.3e-60 236.1 263 76.4
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 3.3e-60 236.1 262 81.7
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 4.3e-60 235.7 266 81.6
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 7.3e-60 235.0 267 82.4
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 7.3e-60 235.0 264 81.1
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 9.6e-60 234.6 262 81.7
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 1.3e-59 234.2 263 78.3
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 2.1e-59 233.4 267 79.4
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 2.8e-59 233.0 250 79.2
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 3.6e-59 232.6 270 79.3
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 3.6e-59 232.6 250 84.8
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 3.6e-59 232.6 255 83.1
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 4.8e-59 232.3 271 78.6
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 8.1e-59 231.5 262 79.8
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 8.1e-59 231.5 281 76.9
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 1.8e-58 230.3 264 80.7
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 1.8e-58 230.3 250 84.0
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 3.1e-58 229.6 261 80.5
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 4.0e-58 229.2 264 81.1
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 6.9e-58 228.4 268 78.7
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 6.9e-58 228.4 262 78.2
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 1.2e-57 227.6 265 79.2
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 1.2e-57 227.6 265 78.9
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 1.5e-57 227.3 264 79.9
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 2.0e-57 226.9 265 78.1
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 2.6e-57 226.5 264 79.2
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 4.4e-57 225.7 268 78.4
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 5.8e-57 225.3 271 77.5
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 9.9e-57 224.6 271 77.9
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 9.9e-57 224.6 264 79.5
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.3e-56 224.2 269 79.6
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 1.3e-56 224.2 264 79.5
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 1.3e-56 224.2 264 79.5
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 1.7e-56 223.8 243 85.6
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 2.2e-56 223.4 256 82.0
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 2.2e-56 223.4 264 79.2
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 2.9e-56 223.0 276 76.4
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 3.8e-56 222.6 276 76.4
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 6.4e-56 221.9 256 81.6
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 6.4e-56 221.9 256 81.6
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 6.4e-56 221.9 256 81.6
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 6.4e-56 221.9 256 81.6
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 8.4e-56 221.5 275 53.1
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 1.1e-55 221.1 256 81.6
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 1.9e-55 220.3 255 80.4
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 7.1e-55 218.4 254 81.1
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 7.1e-55 218.4 230 90.9
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 9.3e-55 218.0 250 81.2
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 9.3e-55 218.0 252 81.0
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.2e-54 217.6 250 82.4
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 1.2e-54 217.6 266 76.3
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 6.0e-54 215.3 264 77.3
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 1.0e-53 214.5 263 78.7
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 1.7e-53 213.8 226 88.9
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 3.0e-53 213.0 255 79.6
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 5.1e-53 212.2 266 76.3
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 5.1e-53 212.2 287 72.1
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.1e-52 211.1 244 82.4
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 2.5e-52 209.9 278 74.5
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.3e-52 209.5 256 80.5
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 5.6e-52 208.8 242 83.1
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 1.6e-51 207.2 269 75.5
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 3.1e-50 203.0 286 72.0
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 9.0e-50 201.4 220 90.0
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 1.5e-49 200.7 215 90.7
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 5.8e-49 198.7 275 45.1
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 9.9e-49 198.0 269 71.0
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 1.3e-48 197.6 229 85.6
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.3e-48 197.6 266 74.8
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.9e-48 196.4 226 85.8
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 6.4e-48 195.3 259 71.4
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 5.5e-47 192.2 252 76.6
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 2.1e-46 190.3 261 72.8
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 6.0e-46 188.7 249 69.9
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 1.0e-45 188.0 264 75.4
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 2.3e-45 186.8 262 72.5
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 7.6e-41 171.8 264 58.0
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.2e-40 170.2 261 69.7
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 6.5e-40 168.7 213 84.5
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 7.9e-38 161.8 244 74.6
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 5.3e-34 149.1 94 76.6
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 6.9e-34 148.7 83 86.7
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 9.0e-34 148.3 193 86.5
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 4.6e-30 136.0 212 79.2
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 3.0e-29 133.3 85 77.6
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 6.7e-29 132.1 81 75.3
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 8.7e-29 131.7 266 56.8
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.4e-26 124.4 269 63.2
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 3.4e-25 119.8 256 64.5
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 9.4e-23 111.7 80 63.8
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.2e-22 111.3 86 69.8
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 5.1e-21 105.9 253 57.7
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.5e-20 104.4 74 67.6
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 2.7e-14 83.6 53 79.2
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 7.7e-09 65.5 249 56.6
AUR62008062 Chenopodium quinoa HOM05D000094 ORTHO05D001056 1.5e-07 61.2 115 36.5
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 1.2e-06 58.2 50 54.0
TPR.G15150 Trifolium pratense HOM05D000094 ORTHO05D001056 2.1e-06 57.4 80 40.0
arahy.Tifrunner.gnm1.ann1.VYJ8LR Arachis hypogaea HOM05D000094 ORTHO05D001056 3.6e-06 56.6 111 29.7
Medtr4g092530 Medicago truncatula HOM05D000094 ORTHO05D001056 3.6e-06 56.6 85 38.8
AUR62028640 Chenopodium quinoa HOM05D000094 ORTHO05D001056 4.7e-06 56.2 115 33.9
HanXRQChr05g0162291 Helianthus annuus HOM05D004527 ORTHO05D005335 4.7e-06 56.2 63 54.0


User provided reference genes

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