Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 0.0e+00 1119.8 779 100.0
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.1e-294 1016.5 779 92.7
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 1.4e-286 989.6 782 88.9
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 2.6e-285 985.3 783 89.0
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 3.1e-254 882.1 781 78.7
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 1.4e-238 830.1 775 71.7
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 7.0e-238 827.8 775 76.4
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 8.4e-215 751.1 789 71.2
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 7.3e-211 738.0 803 67.2
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 1.6e-210 736.9 800 63.9
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 1.7e-204 716.8 769 67.5
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 1.1e-201 707.6 789 64.4
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 9.3e-198 694.5 767 71.4
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 1.3e-194 684.1 738 66.5
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 2.8e-194 682.9 738 66.5
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 6.2e-194 681.8 787 63.9
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 2.2e-191 673.3 792 64.9
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 1.1e-190 671.0 792 59.8
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 1.6e-189 667.2 789 61.7
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 1.8e-188 663.7 765 63.5
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 4.3e-187 659.1 789 65.5
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 6.9e-185 651.7 771 59.4
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.4e-184 649.4 783 58.7
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 3.8e-183 646.0 781 63.0
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 4.9e-183 645.6 792 64.5
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 6.5e-183 645.2 792 64.5
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 8.4e-183 644.8 774 63.4
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 6.7e-180 635.2 739 60.8
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 3.7e-178 629.4 512 70.3
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 8.2e-178 628.2 768 61.6
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 1.4e-177 627.5 793 58.1
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 3.8e-175 619.4 793 57.9
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 3.2e-174 616.3 790 61.5
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 3.5e-173 612.8 768 63.4
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 3.5e-173 612.8 782 61.5
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 7.9e-173 611.7 790 61.6
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 2.3e-172 610.1 770 56.5
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 8.7e-172 608.2 785 57.8
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 1.8e-169 600.5 780 61.5
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 2.4e-169 600.1 757 63.3
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 7.7e-168 595.1 740 66.1
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 7.7e-168 595.1 722 66.6
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 7.7e-168 595.1 740 66.1
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 1.7e-167 594.0 792 57.8
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 5.0e-167 592.4 783 58.5
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 4.2e-166 589.3 763 60.3
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 5.5e-166 589.0 790 57.0
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 9.4e-166 588.2 745 64.6
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 2.7e-165 586.6 747 64.5
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 6.1e-165 585.5 790 62.2
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 1.4e-164 584.3 787 58.7
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 2.3e-164 583.6 764 58.1
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 2.0e-163 580.5 794 61.8
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 9.7e-163 578.2 797 58.7
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 4.8e-162 575.9 754 55.0
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 4.1e-161 572.8 790 62.3
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 1.5e-160 570.9 763 63.8
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 2.9e-159 566.6 759 59.2
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 1.9e-158 563.9 833 57.4
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 2.5e-158 563.5 771 62.0
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 5.5e-158 562.4 791 58.8
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 5.5e-158 562.4 791 58.8
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 2.1e-157 560.5 770 59.5
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 2.3e-156 557.0 786 56.0
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 2.0e-155 553.9 794 55.3
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 4.8e-154 549.3 748 58.3
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 1.4e-153 547.7 785 53.9
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 1.6e-152 544.3 781 57.6
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 4.2e-150 536.2 790 59.1
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 4.0e-148 529.6 789 54.2
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 5.2e-148 529.3 769 60.6
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 6.7e-148 528.9 812 59.0
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.3e-147 526.6 781 57.4
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 4.8e-146 522.7 769 58.8
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 4.8e-146 522.7 559 80.9
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 1.1e-145 521.5 769 52.5
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 2.0e-144 517.3 788 48.5
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 2.2e-143 513.8 782 53.5
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 8.5e-143 511.9 762 58.5
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 8.5e-143 511.9 742 54.9
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 7.2e-142 508.8 797 47.3
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 9.4e-142 508.4 559 80.3
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 1.2e-141 508.1 745 51.1
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 2.1e-141 507.3 744 54.8
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 2.7e-141 506.9 783 53.9
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 3.6e-141 506.5 782 54.7
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 1.0e-140 505.0 782 54.9
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 4.4e-139 499.6 774 51.7
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 1.2e-136 491.5 793 58.1
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 5.9e-136 489.2 790 53.8
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 2.5e-134 483.8 586 64.0
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 3.0e-132 476.9 749 56.2
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.7e-130 471.1 764 53.8
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 1.7e-127 461.1 740 50.9
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.2e-125 454.9 798 48.6
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.0e-124 451.8 746 52.3
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 7.0e-121 439.1 418 70.1
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 7.0e-113 412.5 812 47.0
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 5.4e-105 386.3 766 51.3
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 2.7e-104 384.0 786 43.9
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 1.1e-92 345.5 765 46.5
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 6.0e-88 329.7 769 34.3
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 5.6e-86 323.2 759 42.8
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 3.4e-83 313.9 190 93.2
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 5.3e-76 290.0 518 40.5
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.0e-75 288.1 269 61.0
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 7.6e-75 286.2 257 63.4
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 2.0e-67 261.5 801 30.5
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 6.5e-66 256.5 193 72.5
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 2.0e-59 235.0 509 58.3
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 4.5e-59 233.8 593 39.6
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 1.3e-50 205.7 213 83.1
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 5.0e-50 203.8 123 91.9
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.1e-49 202.6 132 84.1
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.0e-47 196.1 192 62.0
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 3.9e-47 194.1 137 83.9
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 5.7e-46 190.3 155 73.5
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 1.5e-38 165.6 179 56.4
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-38 164.1 338 37.0
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 4.8e-37 160.6 166 61.4
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.1e-36 159.5 328 59.1
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 5.5e-33 147.1 151 57.6
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 1.7e-21 109.0 95 71.6
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 1.6e-19 102.4 132 53.8
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 2.0e-19 102.1 83 62.7
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 2.3e-18 98.6 79 72.2
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.6e-16 92.4 56 89.3
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 1.4e-15 89.4 55 83.6
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 3.4e-14 84.7 148 39.9
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 1.1e-12 79.7 47 93.6
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 5.4e-12 77.4 146 37.7
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 1.6e-11 75.9 155 41.3
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 5.0e-10 70.9 56 69.6
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 5.0e-10 70.9 56 69.6
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 2.1e-08 65.5 51 62.7
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 2.8e-08 65.1 66 57.6
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 8.0e-08 63.5 52 73.1
Cre09.g398808 Chlamydomonas reinhardtii HOM05D001343 ORTHO05D007223 8.9e-07 60.1 93 39.8
CDE06G1033 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 5.7e-06 57.4 41 63.4
arahy.Tifrunner.gnm1.ann1.55UCKQ Arachis hypogaea HOM05D050568 ORTHO05D007223 7.5e-06 57.0 81 38.3


User provided reference genes

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