Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 7.9e-118 427.2 224 100.0
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 9.2e-74 280.8 213 77.5
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 6.0e-73 278.1 213 77.0
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 7.5e-68 261.2 213 71.8
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.8e-62 242.7 209 69.9
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 2.2e-59 233.0 219 64.4
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 1.4e-58 230.3 215 64.7
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 6.8e-53 211.5 153 75.8
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 8.9e-53 211.1 153 76.5
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 2.0e-52 209.9 152 76.3
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 2.4e-50 203.0 216 56.9
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 5.4e-50 201.8 185 63.2
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 9.3e-50 201.1 204 58.3
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 3.5e-49 199.1 203 56.7
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 1.3e-48 197.2 205 58.0
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 7.3e-47 191.4 199 57.8
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 9.6e-47 191.0 214 54.2
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 1.6e-46 190.3 213 58.2
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 2.8e-46 189.5 214 53.3
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 2.8e-46 189.5 194 56.2
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 4.8e-46 188.7 202 56.9
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 6.2e-46 188.3 208 52.9
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 1.1e-45 187.6 210 53.8
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 1.1e-45 187.6 198 56.1
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 2.4e-45 186.4 209 54.1
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 3.1e-45 186.0 197 55.8
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 4.0e-45 185.7 209 53.6
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 5.3e-45 185.3 202 56.4
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 5.3e-45 185.3 207 57.5
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 9.0e-45 184.5 193 58.0
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 1.5e-44 183.7 205 52.7
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.5e-44 183.7 208 53.8
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 1.5e-44 183.7 212 54.7
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.5e-44 183.7 186 55.9
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 2.0e-44 183.3 184 62.0
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 2.0e-44 183.3 206 55.3
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 2.0e-44 183.3 193 56.5
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 2.0e-44 183.3 201 55.2
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 2.6e-44 183.0 193 58.0
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 3.4e-44 182.6 186 58.6
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 3.4e-44 182.6 199 54.8
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 9.9e-44 181.0 207 56.5
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 1.3e-43 180.6 205 53.2
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 2.2e-43 179.9 210 51.9
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.2e-43 179.9 200 54.0
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 4.9e-43 178.7 208 51.4
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 4.9e-43 178.7 198 57.6
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 1.4e-42 177.2 199 54.3
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 1.9e-42 176.8 203 55.2
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 2.4e-42 176.4 190 59.5
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 3.2e-42 176.0 189 57.7
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 5.4e-42 175.3 204 52.9
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 5.4e-42 175.3 200 56.5
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 1.6e-41 173.7 189 56.1
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 2.7e-41 172.9 181 56.9
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 4.6e-41 172.2 199 53.8
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 1.0e-40 171.0 223 51.6
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 1.7e-40 170.2 192 55.2
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 5.1e-40 168.7 213 53.5
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 1.1e-39 167.5 190 56.3
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 1.5e-39 167.2 189 55.0
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 3.3e-39 166.0 187 53.5
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 7.4e-39 164.9 195 53.3
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.6e-38 163.7 204 52.5
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 1.6e-38 163.7 188 53.7
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 2.1e-38 163.3 199 51.8
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 2.8e-38 162.9 208 49.0
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 4.8e-38 162.2 189 54.0
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 6.2e-38 161.8 190 52.6
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 1.1e-37 161.0 227 48.5
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 2.4e-37 159.8 190 52.1
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.4e-37 159.8 196 49.5
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 4.0e-37 159.1 154 61.0
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 5.3e-37 158.7 184 53.8
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 1.2e-36 157.5 188 54.3
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 2.6e-36 156.4 180 55.6
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 3.8e-35 152.5 207 50.2
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 4.9e-35 152.1 188 51.6
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 4.9e-35 152.1 202 51.0
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 2.4e-34 149.8 190 54.2
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 3.2e-34 149.4 149 59.1
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 7.1e-34 148.3 212 49.5
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 9.3e-34 147.9 149 58.4
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.2e-33 147.5 241 44.4
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 1.2e-33 147.5 142 58.5
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.6e-33 147.1 242 44.2
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 1.6e-33 147.1 188 51.1
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.6e-33 147.1 144 59.7
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 2.1e-33 146.7 191 49.7
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 2.7e-33 146.4 197 49.2
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 2.7e-33 146.4 197 49.2
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 2.7e-33 146.4 197 49.2
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 6.0e-33 145.2 190 52.1
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 7.9e-33 144.8 191 51.8
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 1.0e-32 144.4 150 57.3
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 1.0e-32 144.4 168 52.4
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 2.3e-32 143.3 187 50.8
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 2.3e-32 143.3 187 50.8
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 2.3e-32 143.3 187 50.8
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.1e-31 141.0 107 77.6
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 2.5e-31 139.8 184 50.0
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 5.6e-31 138.7 181 48.1
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 1.3e-30 137.5 214 44.9
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 8.1e-30 134.8 140 57.9
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 2.4e-29 133.3 129 57.4
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 6.9e-29 131.7 137 60.6
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 9.0e-29 131.3 161 48.4
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 2.6e-28 129.8 144 52.1
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 5.8e-28 128.6 211 43.1
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 3.2e-26 122.9 185 43.2
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 4.2e-26 122.5 124 58.9
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 5.5e-26 122.1 120 57.5
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 1.6e-25 120.6 137 50.4
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 2.1e-25 120.2 109 60.6
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 4.6e-25 119.0 142 50.0
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 3.9e-24 115.9 134 53.7
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 6.9e-21 105.1 118 52.5
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 2.5e-18 96.7 169 35.5
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 7.2e-18 95.1 70 68.6
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.8e-16 90.5 85 61.2
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 8.7e-16 88.2 85 60.0
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 3.3e-15 86.3 122 44.3
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.7e-15 85.5 79 55.7
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.2e-14 83.6 85 57.6
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 6.3e-14 82.0 79 53.2
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.1e-13 81.3 148 39.2
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 2.4e-13 80.1 167 35.9
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 5.3e-13 79.0 68 64.7
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 4.5e-12 75.9 173 38.2
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 5.9e-12 75.5 110 40.0
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 1.1e-10 71.2 146 41.1
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 2.5e-10 70.1 92 47.8
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 5.5e-10 68.9 142 32.4
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 2.8e-06 56.6 88 36.4


User provided reference genes

Program Settings