Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1744 Fragaria x ananassa HOM05D005198 ORTHO05D006839 3.8e-312 1074.7 549 100.0
FAN19G2119 Fragaria x ananassa HOM05D005198 ORTHO05D006839 1.1e-288 996.1 576 89.4
FvH4_1g25500 Fragaria vesca HOM05D005198 ORTHO05D006839 3.5e-252 874.8 545 85.5
FAN28G0627 Fragaria x ananassa HOM05D005198 ORTHO05D006839 8.4e-246 853.6 519 85.7
FAN26G1320 Fragaria x ananassa HOM05D005198 ORTHO05D006839 1.8e-240 835.9 586 77.3
RcHm_v2.0_Chr2g0123631 Rosa chinensis HOM05D005198 ORTHO05D006839 2.5e-234 815.5 521 81.8
MD15G1424000 Malus domestica HOM05D005198 ORTHO05D006839 1.5e-202 709.9 515 70.9
Prupe.1G207000 Prunus persica HOM05D005198 ORTHO05D006839 5.9e-199 698.0 520 70.6
CANSAT11G2028 Cannabis sativa HOM05D005198 ORTHO05D006839 1.3e-193 680.2 531 66.7
TWI63G1273 Tripterygium wilfordii HOM05D005198 ORTHO05D006839 2.0e-191 672.9 516 67.2
Actinidia28982 Actinidia chinensis HOM05D005198 ORTHO05D006839 4.2e-189 665.2 496 66.7
Hma1.2p1_0150F.1_g066860 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 4.2e-189 665.2 519 65.3
Lj1g0021010 Lotus japonicus HOM05D005198 ORTHO05D006839 6.1e-188 661.4 520 64.6
Manes.04G036150 Manihot esculenta HOM05D005198 ORTHO05D006839 4.0e-187 658.7 497 67.8
QL10p055731 Quercus lobata HOM05D005198 ORTHO05D006839 4.0e-187 658.7 489 67.5
Thecc.01G302200 Theobroma cacao HOM05D005198 ORTHO05D006839 8.9e-187 657.5 509 66.2
PGR142G0872 Punica granatum HOM05D005198 ORTHO05D006839 2.0e-186 656.4 520 65.4
Ciclev10019752m.g Citrus clementina HOM05D005198 ORTHO05D006839 2.6e-186 656.0 499 67.9
Eucgr.H00311 Eucalyptus grandis HOM05D005198 ORTHO05D006839 3.4e-186 655.6 495 66.9
Rhsim04G0106800 Rhododendron simsii HOM05D005198 ORTHO05D006839 7.5e-186 654.4 519 64.5
Glyma.07G208200 Glycine max HOM05D005198 ORTHO05D006839 3.7e-185 652.1 517 64.4
TAR365G0102 Trochodendron aralioides HOM05D005198 ORTHO05D006839 2.4e-184 649.4 518 65.3
Haze_01365 Corylus avellana HOM05D005198 ORTHO05D006839 5.4e-184 648.3 546 63.6
ClCG07G015220 Citrullus lanatus HOM05D005198 ORTHO05D006839 2.7e-183 646.0 511 65.2
Peaxi162Scf00075g01544 Petunia axillaris HOM05D005198 ORTHO05D006839 2.7e-183 646.0 485 66.6
MELO3C017760.2 Cucumis melo HOM05D005198 ORTHO05D006839 7.8e-183 644.4 514 63.8
Sed0009334 Sechium edule HOM05D005198 ORTHO05D006839 1.0e-182 644.0 511 65.6
Potri.013G126300 Populus trichocarpa HOM05D005198 ORTHO05D006839 5.6e-181 638.3 510 63.7
PSO675G4502 Papaver somniferum HOM05D005198 ORTHO05D006839 7.3e-181 637.9 512 65.4
PSO732G0749 Papaver somniferum HOM05D005198 ORTHO05D006839 1.2e-180 637.1 512 65.4
Sabra13G0105600 Salix brachista HOM05D005198 ORTHO05D006839 6.1e-180 634.8 494 64.6
arahy.Tifrunner.gnm1.ann1.A4X0ZB Arachis hypogaea HOM05D005198 ORTHO05D006839 8.0e-180 634.4 516 64.5
VMungo0251G3269 Vigna mungo HOM05D005198 ORTHO05D006839 2.3e-179 632.9 521 62.6
Aqoxy2G02750 Aquilegia oxysepala HOM05D005198 ORTHO05D006839 5.2e-179 631.7 517 62.5
Duzib151G0783 Durio zibethinus HOM05D005198 ORTHO05D006839 5.2e-179 631.7 524 62.8
Phvul.003G296400 Phaseolus vulgaris HOM05D005198 ORTHO05D006839 8.9e-179 630.9 500 64.2
Glyma.02G137200 Glycine max HOM05D005198 ORTHO05D006839 1.2e-178 630.6 497 64.2
Medtr4g087280 Medicago truncatula HOM05D005198 ORTHO05D006839 3.4e-178 629.0 494 64.6
Solyc08g014060.4 Solanum lycopersicum HOM05D005198 ORTHO05D006839 3.4e-178 629.0 523 61.8
GSVIVG01038139001 Vitis vinifera HOM05D005198 ORTHO05D006839 4.4e-178 628.6 491 64.6
arahy.Tifrunner.gnm1.ann1.Q28JUU Arachis hypogaea HOM05D005198 ORTHO05D006839 7.5e-178 627.9 517 64.0
Cc03_g14040 Coffea canephora HOM05D005198 ORTHO05D006839 4.9e-177 625.2 519 63.0
Oeu020813.1 Olea europaea HOM05D005198 ORTHO05D006839 1.1e-176 624.0 480 65.2
SGA_v2.0_scaffold12G06184 Striga asiatica HOM05D005198 ORTHO05D006839 3.2e-176 622.5 518 61.8
Sopen08g004940 Solanum pennellii HOM05D005198 ORTHO05D006839 3.5e-175 619.0 527 60.5
Dinv07059 Davidia involucrata HOM05D005198 ORTHO05D006839 6.0e-175 618.2 505 63.6
Psat7g121400 Pisum sativum HOM05D005198 ORTHO05D006839 1.0e-174 617.5 516 62.8
TPR.G23517 Trifolium pratense HOM05D005198 ORTHO05D006839 1.0e-174 617.5 484 63.8
Nitab4.5_0011921g0010 Nicotiana tabacum HOM05D005198 ORTHO05D006839 3.0e-174 615.9 478 64.0
Lalb_Chr09g0328121 Lupinus albus HOM05D005198 ORTHO05D006839 8.6e-174 614.4 485 63.5
SalBow3G0226 Salvia bowleyana HOM05D005198 ORTHO05D006839 1.1e-173 614.0 493 64.1
CsaV3_4G002810 Cucumis sativus L. HOM05D005198 ORTHO05D006839 5.6e-173 611.7 537 60.7
Carub.0002s1997 Capsella rubella HOM05D005198 ORTHO05D006839 7.3e-173 611.3 495 61.6
CAN.G1411.3 Capsicum annuum HOM05D005198 ORTHO05D006839 3.6e-172 609.0 493 62.7
AT1G73180 Arabidopsis thaliana HOM05D005198 ORTHO05D006839 8.0e-172 607.8 495 61.8
Gohir.A02G009975 Gossypium hirsutum HOM05D005198 ORTHO05D006839 8.0e-172 607.8 496 62.9
Gohir.D02G010200 Gossypium hirsutum HOM05D005198 ORTHO05D006839 1.1e-171 607.4 496 62.9
AUR62002390 Chenopodium quinoa HOM05D005198 ORTHO05D006839 4.0e-171 605.5 514 61.1
Gorai.005G012500 Gossypium raimondii HOM05D005198 ORTHO05D006839 4.0e-171 605.5 507 61.9
Sp5g28150 Schrenkiella parvula HOM05D005198 ORTHO05D006839 6.8e-171 604.7 495 61.6
AL2G32950 Arabidopsis lyrata HOM05D005198 ORTHO05D006839 1.2e-170 604.0 495 61.6
Ah.13g073540 Amaranthus hybridus HOM05D005198 ORTHO05D006839 4.4e-170 602.1 495 62.2
CSS0046337 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 7.5e-170 601.3 511 60.7
Thhalv10018413m.g Eutrema salsugineum HOM05D005198 ORTHO05D006839 9.8e-170 600.9 495 61.8
Migut.G01222 Erythranthe guttata HOM05D005198 ORTHO05D006839 3.7e-169 599.0 502 61.0
CARHR066180 Cardamine hirsuta HOM05D005198 ORTHO05D006839 1.2e-167 594.0 496 60.7
Aa31LG4G3470 Aethionema arabicum HOM05D005198 ORTHO05D006839 5.1e-166 588.6 510 59.0
vmacro09048 Vaccinium macrocarpon HOM05D005198 ORTHO05D006839 2.5e-165 586.3 704 48.7
C06p34190 Brassica napus HOM05D005198 ORTHO05D006839 3.3e-165 585.9 496 60.5
ECA232G1195 Erigeron canadensis HOM05D005198 ORTHO05D006839 3.3e-165 585.9 513 60.0
COL.COLO4_23329 Corchorus olitorius HOM05D005198 ORTHO05D006839 1.6e-164 583.6 497 59.8
THA.LOC104813938 Tarenaya hassleriana HOM05D005198 ORTHO05D006839 4.7e-164 582.0 513 59.1
Hund03196 Selenicereus undatus HOM05D005198 ORTHO05D006839 2.3e-163 579.7 513 60.6
A07p29920 Brassica napus HOM05D005198 ORTHO05D006839 5.2e-163 578.6 498 60.2
AUR62023798 Chenopodium quinoa HOM05D005198 ORTHO05D006839 7.5e-162 574.7 520 59.0
Atru.BG.83.p Acer truncatum HOM05D005198 ORTHO05D006839 6.4e-161 571.6 481 62.4
Lj4A14T50 Lonicera japonica HOM05D005198 ORTHO05D006839 6.4e-161 571.6 443 63.4
Zm00001eb246620 Zea mays HOM05D005198 ORTHO05D006839 1.7e-158 563.5 514 56.8
BraA07t30630Z Brassica rapa HOM05D005198 ORTHO05D006839 8.6e-158 561.2 497 59.4
BolC6t38540H Brassica oleracea HOM05D005198 ORTHO05D006839 1.6e-156 557.0 498 59.4
ATR0733G245 Amborella trichopoda HOM05D005198 ORTHO05D006839 8.9e-155 551.2 486 58.8
Lsat_1_v5_gn_9_61481 Lactuca sativa HOM05D005198 ORTHO05D006839 5.8e-154 548.5 506 57.3
BcaC08g45664 Brassica carinata HOM05D005198 ORTHO05D006839 1.9e-152 543.5 499 57.7
Eucgr.L01724 Eucalyptus grandis HOM05D005198 ORTHO05D006839 1.9e-152 543.5 475 60.4
CDE04G2667 Ceratophyllum demersum HOM05D005198 ORTHO05D006839 1.3e-150 537.3 518 55.6
HanXRQChr15g0483441 Helianthus annuus HOM05D005198 ORTHO05D006839 3.9e-150 535.8 452 62.2
Cpa.g.sc9.361 Carica papaya HOM05D005198 ORTHO05D006839 4.3e-149 532.3 513 57.1
Nitab4.5_0000122g0140 Nicotiana tabacum HOM05D005198 ORTHO05D006839 1.1e-147 527.7 432 62.7
Dinv33201 Davidia involucrata HOM05D005198 ORTHO05D006839 5.1e-142 508.8 402 68.4
CiPaw.02G100600 Carya illinoinensis HOM05D005198 ORTHO05D006839 9.6e-141 504.6 401 66.3
Hma1.2p1_0150F.1_g066870 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 2.2e-137 493.4 390 62.8
Nn1g09646 Nelumbo nucifera HOM05D005198 ORTHO05D006839 1.8e-131 473.8 377 66.6
Sc25g0002780 Simmondsia chinensis HOM05D005198 ORTHO05D006839 3.2e-120 436.4 285 73.3
CSS0050366 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 9.3e-120 434.9 381 58.3
Mapoly0011s0080 Marchantia polymorpha HOM05D005198 ORTHO05D006839 2.3e-118 430.3 483 47.6
Lalb_Chr16g0384461 Lupinus albus HOM05D005198 ORTHO05D006839 1.9e-117 427.2 285 70.2
Pp3c6_14240 Physcomitrium patens HOM05D005198 ORTHO05D006839 3.3e-117 426.4 514 46.5
MBI11_g23940_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.7e-113 414.1 287 69.7
EL10Ac3g06083 Beta vulgaris HOM05D005198 ORTHO05D006839 4.2e-112 409.5 290 67.2
unitig_92.g28215 Utricularia gibba HOM05D005198 ORTHO05D006839 5.1e-110 402.5 276 67.4
CBR_g53754 Chara braunii HOM05D005198 ORTHO05D006839 1.2e-106 391.3 536 42.2
DCAR_027527 Daucus carota HOM05D005198 ORTHO05D006839 2.6e-106 390.2 307 59.9
Atru.chr4.1402 Acer truncatum HOM05D005198 ORTHO05D006839 3.4e-106 389.8 254 73.2
SMO145G0177 Selaginella moellendorffii HOM05D005198 ORTHO05D006839 1.2e-103 381.3 518 44.0
Eucgr.H00310 Eucalyptus grandis HOM05D005198 ORTHO05D006839 5.0e-97 359.4 470 45.3
SEGI_32957 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 7.2e-96 355.5 389 51.9
SHI30329 Sapria himalayana HOM05D005198 ORTHO05D000023 5.9e-90 335.9 307 57.3
Ca_25383_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 1.6e-87 327.8 266 65.0
AagrBONN_evm.TU.Sc2ySwM_228.1363 Anthoceros agrestis HOM05D005198 ORTHO05D006839 3.1e-75 287.0 291 50.5
PRCOL_00000684 Prasinoderma coloniale HOM05D005198 ORTHO05D006839 3.1e-62 243.8 483 34.8
Hma1.2p1_0554F.1_g177930 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 6.4e-60 236.1 324 47.8
Lj3g0007177 Lotus japonicus HOM05D005198 ORTHO05D006839 2.4e-59 234.2 174 69.0
Lj6g0012253 Lotus japonicus HOM05D005198 ORTHO05D006839 2.4e-59 234.2 174 69.0
Ca_18641_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 5.2e-54 216.5 492 31.7
MCO01G167 Micromonas commoda HOM05D005198 ORTHO05D006839 2.0e-53 214.5 517 30.6
Lalb_Chr16g0384471 Lupinus albus HOM05D005198 ORTHO05D006839 1.7e-49 201.4 140 69.3
MBI11_g23941_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 5.6e-48 196.4 157 65.6
unitig_92.g28214 Utricularia gibba HOM05D005198 ORTHO05D006839 7.3e-48 196.1 173 61.8
DCAR_027526 Daucus carota HOM05D005198 ORTHO05D006839 2.8e-47 194.1 170 60.0
Cre08.g375900 Chlamydomonas reinhardtii HOM05D005198 ORTHO05D006839 8.1e-47 192.6 532 29.9
CAN.G256.23 Capsicum annuum HOM05D005198 ORTHO05D006839 1.9e-43 181.4 144 56.2
Nitab4.5_0009616g0020 Nicotiana tabacum HOM05D005198 ORTHO05D006839 9.2e-43 179.1 110 79.1
SHI30330 Sapria himalayana HOM05D000105 ORTHO05D000023 4.6e-42 176.8 194 46.4
CSS0015120 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 4.6e-34 150.2 130 62.3
SEGI_27162 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 5.3e-30 136.7 125 49.6
MBI14_g40932_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 3.2e-27 127.5 85 72.9
BolC3t18675H Brassica oleracea HOM05D005198 ORTHO05D006839 1.7e-25 121.7 96 57.3
Medtr5g091610 Medicago truncatula HOM05D001363 ORTHO05D006839 1.3e-20 105.5 66 72.7
MBI11_g30564_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 2.1e-18 98.2 59 79.7
Os02g0606100 Oryza sativa ssp. japonica HOM05D005198 ORTHO05D006839 1.8e-17 95.1 113 54.9
MBI03_g14783_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 8.7e-17 92.8 75 66.7
Psat1g217120 Pisum sativum HOM05D005198 ORTHO05D006839 4.3e-16 90.5 66 63.6
MBI07_g28641_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 1.2e-13 82.4 73 60.3
Lsat_1_v5_gn_5_150841 Lactuca sativa HOM05D005198 ORTHO05D004031 2.0e-13 81.6 68 63.2
Glyma.03G132500 Glycine max HOM05D005198 ORTHO05D006839 4.5e-13 80.5 74 51.4
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 8.4e-12 76.3 380 23.4
BolC2t09126H Brassica oleracea HOM05D005198 ORTHO05D042013 1.1e-11 75.9 130 41.5
C02p30710 Brassica napus HOM05D005198 ORTHO05D042013 2.5e-11 74.7 130 40.8
Dinv33202 Davidia involucrata HOM05D005198 ORTHO05D006839 4.2e-11 73.9 48 66.7
COL.COLO4_29149 Corchorus olitorius HOM05D005198 ORTHO05D006839 2.1e-10 71.6 73 54.8
CARHR294550 Cardamine hirsuta HOM05D002708 ORTHO05D003516 1.3e-09 68.9 440 22.0
SGA_v2.0_scaffold649G53360 Striga asiatica HOM05D005198 ORTHO05D006839 8.7e-09 66.2 48 64.6
Medtr2g088350 Medicago truncatula HOM05D000088 ORTHO05D000830 1.6e-07 62.0 38 65.8


User provided reference genes

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