Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 6262.6 3188 100.0
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 6062.6 3218 96.6
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 5996.0 3236 95.5
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 5858.9 3245 93.4
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 5493.7 3242 86.9
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 4385.1 3258 70.5
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 4141.7 3246 67.1
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 3339.7 3250 56.6
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 3291.1 3269 55.7
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 3258.0 3257 54.9
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 3172.5 3261 53.8
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 3133.6 3266 52.6
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 3119.3 3263 52.8
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 3118.2 3919 47.6
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 3046.9 3255 52.1
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 2997.2 3307 51.1
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 2977.2 3265 51.0
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 2976.8 3254 51.9
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 2967.2 3354 50.3
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 2898.2 3255 50.0
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 2867.0 3249 48.7
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 2840.1 3259 48.5
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 2830.8 3251 48.9
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 2814.6 3022 52.1
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 2798.8 3250 48.2
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2771.1 3260 48.6
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 2766.5 2894 52.7
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 2765.7 3250 47.8
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 2742.2 3528 46.0
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 2719.9 3287 47.6
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2672.1 2976 50.5
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 2649.0 3259 46.8
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 2601.6 3123 47.5
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2595.8 3236 46.6
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 2586.2 3260 45.6
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 2543.5 3274 46.1
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 2541.1 3285 45.5
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2507.6 3281 44.2
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2495.3 3279 45.2
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 2481.1 3273 44.3
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2476.4 3238 44.1
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 2472.2 3064 45.4
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 2457.6 3264 44.5
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 2429.1 3261 44.2
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 2419.8 3263 43.7
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2415.6 3251 43.9
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 2415.6 3251 43.9
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 2415.2 3275 44.8
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2396.7 3249 43.5
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 2379.0 3239 43.4
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 2376.3 3322 41.8
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 2369.0 3290 43.4
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 2369.0 3302 43.1
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 2367.4 3317 42.7
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 2364.0 3305 42.7
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2363.2 3251 43.2
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 2358.9 3264 43.9
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 2357.4 3297 42.5
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 2353.6 2271 56.7
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 2343.2 3256 43.7
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 2339.7 3252 43.3
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 2328.9 3287 43.0
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 2287.3 3199 43.7
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 2273.0 3298 42.2
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 2216.8 3339 41.0
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2205.3 2953 44.1
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 2202.2 2334 51.8
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 2186.0 3216 41.3
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2169.4 2381 51.4
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2139.4 1191 92.0
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 2110.9 2555 47.0
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 0.0e+00 1999.9 2949 41.3
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1999.6 3336 39.0
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 1898.2 2888 39.6
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1770.7 1749 54.7
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1742.6 3304 35.4
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1724.5 1286 68.5
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 0.0e+00 1707.6 2623 41.3
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1682.9 1806 51.4
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1632.5 1448 58.1
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1593.2 1333 61.2
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1582.8 1699 50.6
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1531.5 1375 59.1
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1472.6 1348 57.9
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1466.4 1573 52.4
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 0.0e+00 1441.8 3226 32.3
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1408.7 1780 45.2
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1399.8 1340 54.9
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1293.5 1215 55.4
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 0.0e+00 1190.3 2584 33.2
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 0.0e+00 1150.6 2064 36.9
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 2.0e-310 1070.8 1868 36.2
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 5.9e-307 1059.3 1440 44.6
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 5.3e-300 1036.2 2054 33.6
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 1.0e-287 995.3 1315 43.3
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 1.3e-277 961.8 1914 35.0
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 7.7e-275 952.6 1943 33.8
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 9.5e-273 945.7 1091 48.9
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 1.9e-257 894.8 1613 37.8
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 1.5e-249 868.6 1909 32.3
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 2.4e-231 808.1 1766 33.1
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 1.9e-228 798.5 596 68.8
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 6.5e-189 667.2 655 56.3
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 2.6e-182 645.2 2180 27.1
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 7.2e-180 637.1 1016 38.8
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 1.7e-165 589.3 888 39.9
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 1.0e-162 580.1 1326 30.5
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 3.4e-161 575.1 1326 31.8
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 8.6e-157 560.5 1315 31.0
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 4.2e-156 558.1 979 35.6
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 7.2e-156 557.4 881 39.2
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 5.0e-149 534.6 459 62.3
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 1.6e-147 529.6 948 35.8
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 1.3e-144 520.0 944 38.1
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 4.4e-137 495.0 875 35.2
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 6.0e-134 484.6 864 36.3
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 7.8e-134 484.2 1219 30.3
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 7.1e-111 407.9 446 47.1
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 3.5e-110 405.6 1242 27.8
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 5.5e-95 355.1 330 59.1
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 1.3e-88 334.0 219 76.3
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 2.5e-87 329.7 184 89.1
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 1.2e-86 327.4 1223 26.5
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 2.8e-83 316.2 226 69.9
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 5.0e-80 305.4 678 30.7
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 9.4e-71 274.6 153 89.5
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 4.8e-67 262.3 475 36.8
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 2.0e-65 256.9 386 43.8
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 3.2e-63 249.6 170 76.5
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 5.7e-60 238.8 212 59.9
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 6.8e-53 215.3 571 30.6
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 8.8e-53 214.9 1111 23.5
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 4.0e-45 189.5 146 64.4
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 5.2e-45 189.1 147 63.9
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 6.8e-45 188.7 146 64.4
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.2e-44 188.0 104 87.5
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 1.7e-40 174.1 183 51.9
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-33 150.6 466 28.5
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 2.5e-31 143.7 204 35.8
Glyma.02G062000 Glycine max HOM05D004524 ORTHO05D005477 2.1e-30 140.6 243 37.4
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 6.1e-30 139.0 123 61.8
SEGI_31558 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 1.2e-28 134.8 702 22.9
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 2.0e-28 134.0 172 44.8
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 3.4e-28 133.3 208 34.1
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 6.4e-27 129.0 112 58.0
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 1.0e-24 121.7 326 30.7
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 4.3e-23 116.3 331 29.0
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.4e-21 111.3 61 88.5
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 3.1e-21 110.2 165 35.8
Thhalv10006113m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 6.4e-19 102.4 326 27.3
CBR_g36536 Chara braunii HOM05D000019 ORTHO05D000048 7.8e-17 95.5 331 26.0
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 5.1e-16 92.8 111 46.8
SEGI_30472 Sequoiadendron giganteum HOM05D004524 ORTHO05D037600 7.3e-15 89.0 180 32.2
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 9.5e-15 88.6 90 43.3
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 2.1e-14 87.4 70 55.7
Actinidia04030 Actinidia chinensis HOM05D004524 ORTHO05D005477 4.7e-14 86.3 96 47.9
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 1.8e-13 84.3 128 42.2
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 1.7e-11 77.8 105 41.0
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 1.2e-09 71.6 42 81.0
VMungo0720G0368 Vigna mungo HOM05D004524 ORTHO05D051592 1.2e-09 71.6 139 31.7
Lj4C825G3 Lonicera japonica HOM05D002653 ORTHO05D002623 1.6e-09 71.2 484 20.9
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 5.6e-07 62.8 226 23.9
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 9.6e-07 62.0 566 20.0
FvH4_5g34340 Fragaria vesca HOM05D004524 ORTHO05D005477 3.6e-06 60.1 30 90.0


User provided reference genes

Program Settings